Dr Simon Tuke
Senior Lecturer
School of Mathematical Sciences
College of Sciences
Eligible to supervise Masters and PhD - email supervisor to discuss availability.
Applied statistician with expertise in biostatistics, bioinformatics, and network analysis.
| Date | Position | Institution name |
|---|---|---|
| 2007 - ongoing | Lecturer | University of Adelaide |
| Date | Institution name | Country | Title |
|---|---|---|---|
| 2005 - 2013 | University of Adelaide | Australia | PhD |
| 2001 - 2004 | University of Adelaide | Australia | BSc (Maths & Comp Sci) |
| 1987 - 1992 | Edinburgh University | Scotland | BVM&S |
| Year | Citation |
|---|---|
| 2025 | Rohrlach, A. B., Tuke, J., Popli, D. R., & Haak, W. (2025). BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data. Journal of Open Source Software, 10(108), 7916. |
| 2025 | Wang, K., Tobias, B., Pany-Kucera, D., Berner, M., Eggers, S., Gnecchi-Ruscone, G. A., . . . Hofmanová, Z. (2025). Ancient DNA reveals reproductive barrier despite shared Avar-period culture.. Nature, 638(8052), 1007-1014. Scopus11 WoS14 Europe PMC6 |
| 2025 | Brereton, J. E., Tuke, J., & Fernandez, E. J. (2025). Incorporating the Enclosure MonitoR Use (EMU) App to ZooMonitor Observations Technical Report.. Zoo biology, 44(4), 383-390. Scopus2 WoS2 Europe PMC1 |
| 2025 | Cornish, P., Cornish, A., & Tuke, J. (2025). The complete relief of chronic pain utilizing electromagnetic theory: A retrospective observational cohort study.. iScience, 28(7), 112916. |
| 2025 | Fernandez, E. J., Brereton, J. E., & Tuke, J. (2025). Learning your individual inferences: A guide for overcoming statistical challenges in small-N studies. Applied Animal Behaviour Science, 292, 106804. |
| 2025 | Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2025). Probabilistic emotion and sentiment modelling of patient-reported experiences. Artificial Intelligence in Medicine, 167, 103178-1-103178-18. |
| 2024 | Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2024). Revealing patient-reported experiences in healthcare from social media using thedesign-acquire-process-model-analyse-visualise framework. Digit Health, 10, 1-20. WoS1 |
| 2024 | du Preez, M., Taggart, R., Nakahara, N., Tuke, J., & Siow, J. W. (2024). Evaluation of measurements for tracheal hypoplasia in French bulldogs. Veterinary Radiology and Ultrasound, 65(6), 865-874. |
| 2024 | Goncalves Costa, A., Nielsen, T., Christley, R., Tuke, J., & Hazel, S. J. (2024). Investigating Factors Associated With Stress in Guardians of Dogs Under 12 Months of Age. ANTHROZOOS, 37(6), 1195-1215. |
| 2024 | Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2024). Revealing patient-reported experiences in healthcare from social media using the design-acquire-process-model-analyse-visualise framework (vol 10, 10.1177/20552076241251715, 2024). DIGITAL HEALTH, 10, 1 page. |
| 2024 | Rivollat, M., Rohrlach, A. B., Ringbauer, H., Childebayeva, A., Mendisco, F., Barquera, R., . . . Haak, W. (2024). Inferences on regional networks from local genetic trees, the example of the Neolithic site of Gurgy 'les Noisats'. Bulletins Et Memoires De La Societe D Anthropologie De Paris, 36. |
| 2023 | Ryan, M., Tuke, J., Hutchinson, M. R., & Spencer, S. J. (2023). Gender-specific effects of COVID-19 lockdowns on scientific publishing productivity: Impact and resilience. Social Science and Medicine, 320, 115761-1-115761-9. Scopus8 WoS9 Europe PMC4 |
| 2023 | Zoanetti, J., Nielsen, T. D., Tuke, S., Young, J., & Hazel, S. (2023). Australian veterans' experience of pet ownership: Benefits, costs, and moderating factors. Human-Animal Interactions, 11(1), 1-1-1-8. Scopus2 WoS2 |
| 2023 | Rohrlach, A., Tuke, J., Popli, D., & Haak, W. (2023). BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data. Europe PMC5 |
| 2023 | Korver, S. K., Bowen, J. M., Gibson, R. J., Ball, I. A., Secombe, K. R., Wain, T. J., . . . Coller, J. K. (2023). Advanced statistics identifcation of participant and treatment predictors associated with severe adverse efects induced by fuoropyrimidine‑based chemotherapy. Cancer Chemother Pharmacol, 91(6), 507-521. Scopus4 WoS3 Europe PMC3 |
| 2023 | Hyndman, T. H., Fretwell, S., Bowden, R. S., Coaicetto, F., Irons, P. C., Aleri, J. W., . . . Metcalfe, S. S. (2023). The effect of doxapram on survival and APGAR score in newborn puppies delivered by elective caesarean: A randomized controlled trial. Journal of Veterinary Pharmacology and Therapeutics, 46(6), 353-364. Scopus8 WoS8 Europe PMC5 |
| 2023 | Ankeny, R. A., Whittaker, A. L., Ryan, M., Boer, J., Plebanski, M., Tuke, J., & Spencer, S. J. (2023). The power of effective study design in animal Experimentation: Exploring the statistical and ethical implications of asking multiple questions of a data set. Brain, Behavior, and Immunity, 112, 163-172. Scopus6 WoS6 Europe PMC4 |
| 2023 | Ryan, M., Glonek, G., Tuke, J., & Humphries, M. (2023). Capturing functional connectomics using Riemannian partial least squares.. Scientific Reports, 13(1), 15 pages. Scopus1 WoS1 |
| 2023 | Rivollat, M., Rohrlach, A. B., Ringbauer, H., Childebayeva, A., Mendisco, F., Barquera, R., . . . Haak, W. (2023). Extensive pedigrees reveal the social organization of a Neolithic community.. Nature, 620(7974), 600-606. Scopus57 WoS50 Europe PMC45 |
| 2022 | Lountain, O., Tuke, J., Brown, H., Redman, K., Wilczek, S., & Humphries, M. A. (2022). A multivariate extension to the standard 4σ criterion for comparison of forensic glass evidence.. Forensic Sci Int, 338, 1-7. Scopus2 WoS1 Europe PMC1 |
| 2022 | Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2022). Revealing Patient-Reported Experiences in Healthcare from Social Media using the DAPMAV Framework.. CoRR, abs/2210.04232. |
| 2022 | Nasim, M., Weber, D., South, T., Tuke, J., Bean, N. G., Falzon, L., & Mitchell, L. (2022). Are we always in strife? A longitudinal study of the echo chamber effect in the Australian Twittersphere.. CoRR, abs/2201.09161. |
| 2022 | Sui, Y., Wollan, D., McRae, J., Muhlack, R., Tuke, J., & Wilkinson, K. (2022). Impact of commercial scale ultrafiltration on the composition of white and rosé wine. Separation and Purification Technology, 284, 8 pages. Scopus11 WoS9 |
| 2022 | Nasim, M., Weber, D., South, T., Tuke, J., Bean, N., Falzon, L., & Mitchell, L. (2022). Are we always in strife? A longitudinal study of the echo chamber effect in the Australian Twittersphere. |
| 2022 | Ryan, M., Glonek, G., Humphries, M., & Tuke, J. (2022). Multivariate distance matrix regression for a manifold-valued response variable. |
| 2022 | Brereton, J. E., Tuke, J., & Fernandez, E. J. (2022). A simulated comparison of behavioural observation sampling methods.. Scientific Reports, 12(1), 3096-1-3096-10. Scopus21 WoS21 Europe PMC13 |
| 2022 | Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2022). Revealing Patient-Reported Experiences in Healthcare from Social Media using the DAPMAV Framework. |
| 2022 | Souilmi, Y., Tobler, R., Johar, A., Williams, M., Grey, S. T., Schmidt, J., . . . Huber, C. D. (2022). Admixture has obscured signals of historical hard sweeps in humans. Nature Ecology & Evolution, 6(12), 2003-2015. Scopus18 WoS18 Europe PMC29 |
| 2021 | Coller, J. K., Tuke, J., Wain, T. J., Quinn, E., Steele, L., Abreu, M., . . . Sullivan, K. (2021). Associations of immune genetic variability with gulf war illness in 1990–1991 gulf war veterans from the gulf war illness consortium (Gwic) multisite case-control study. Brain Sciences, 11(11), 1410-1-1410-7. Scopus6 WoS5 Europe PMC4 |
| 2021 | Moloney, G. K., Tuke, J., Dal Grande, E., Nielsen, T., & Chaber, A. -L. (2021). Is YouTube promoting the exotic pet trade? Analysis of the global public perception of popular YouTube videos featuring threatened exotic animals.. PloS one, 16(4), e0235451. Scopus32 WoS25 Europe PMC6 |
| 2021 | Sallustio, B. C., Noll, B. D., Hu, R., Barratt, D. T., Tuke, S. J., Coller, J. K., . . . Somogyi, A. A. (2021). Tacrolimus dose, blood concentrations and acute nephrotoxicity, but not CYP3A5/ABCB1 genetics, are associated with allograft tacrolimus concentrations in renal transplant recipients. British Journal of Clinical Pharmacology, 87(10), 3901-3909. Scopus21 WoS21 Europe PMC14 |
| 2021 | Aguiar Macedo Teixeira, J. C., Jacobs, G. S., Stringer, C., Tuke, S., Hudjashov, G., Purnomo, G. A., . . . Helgen, K. M. (2021). Widespread Denisovan ancestry in Island Southeast Asia but no evidence of substantial super-archaic hominin admixture. Nature Ecology & Evolution, 5(5), 616-624. Scopus39 WoS31 Europe PMC18 |
| 2020 | He, B., Ng, Z. Q., Mou, L., Delriviere, L., Jaques, B., Tuke, S. J., . . . Lim, W. (2020). Long Term Outcome of Kidney Transplant by Using Restored Kidney Grafts after Tumour ex vivo Excision - A prospective study. Transplant international : official journal of the European Society for Organ Transplantation, 33(10), 1253-1261. Scopus4 WoS4 Europe PMC4 |
| 2020 | Teixeira, J., Jacobs, G., Stringer, C., Tuke, J., Hudjashov, G., Purnomo, G., . . . Helgen, K. (2020). Introgression, hominin dispersal and megafaunal survival in Late Pleistocene Island Southeast Asia. |
| 2020 | Souilmi, Y., Tobler, R., Johar, A., Williams, M., Grey, S., Schmidt, J., . . . Cooper, A. (2020). Ancient human genomes reveal a hidden history of strong selection in Eurasia. Europe PMC1 |
| 2020 | Hunter, T., van Rooy, D., McArthur, M., Bennett, S., Tuke, J., & Hazel, S. (2020). Mental Health Disease or Preventable Problem? Australian Dog Trainers' Opinions about Canine Separation Anxiety Differ with Training Style.. Animals (Basel), 10(8), 15 pages. Scopus5 WoS4 Europe PMC1 |
| 2020 | Szeto, C., Ristic, R., Capone, D., Puglisi, C., Pagay, V., Culbert, J., . . . Wilkinson, K. (2020). Uptake and glycosylation of smoke-derived volatile phenols by Cabernet Sauvignon grapes and their subsequent fate during winemaking. Molecules, 25(16), 1-17. Scopus45 WoS43 Europe PMC31 |
| 2020 | Tuke, J., Nguyen, A., Nasim, M., Mellor, D., Wickramasinghe, A., Bean, N. G., & Mitchell, L. (2020). Pachinko Prediction: A Bayesian method for event prediction from social media data.. Inf. Process. Manag., 57, 102147. |
| 2020 | Tuke, J., Nguyen, A., Nasim, M., Mellor, D., Wickramasinghe, A., Bean, N. G., & Mitchell, L. (2020). Pachinko Prediction: A Bayesian method for event prediction from social media data. Information Processing and Management, 57(2), 102147-1-102147-13. Scopus23 WoS16 |
| 2020 | Crotty, S. M., Minh, B. Q., Bean, N. G., Holland, B. R., Tuke, J., Jermiin, L. S., & von Haeseler, A. (2020). GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments.. Systematic biology, 69(2), 249-264. Scopus148 WoS146 Europe PMC127 |
| 2020 | Goncalves Costa, A., Nielsen, T., Dal Grande, E., Tuke, J., & Hazel, S. (2020). Regulatory Compliance in Online Dog Advertisements in Australia.. Animals : an open access journal from MDPI, 10(3), 20 pages. Scopus3 WoS3 Europe PMC3 |
| 2020 | Breed, W. G., Ding, X., Tuke, J., & Leigh, C. M. (2020). Morphological diversity of the spermatozoon and male reproductive tract in Australian Hopping mice, genus Notomys – is it determined by sexual selection?. Journal of Zoology, 311(3), 194-203. Scopus3 WoS3 |
| 2020 | Fitzgerald, S. P., Bean, N. G., Falhammar, H., & Tuke, S. J. (2020). CLINICAL PARAMETERS ARE MORE LIKELY TO BE ASSOCIATED WITH THYROID HORMONE LEVELS THAN WITH TSH LEVELS: A SYSTEMATIC REVIEW AND META-ANALYSIS.. Thyroid, 30(12), 1695-1709. Scopus84 WoS71 Europe PMC58 |
| 2020 | Pham, D., Ristic, R., Stockdale, V. J., Jeffery, D. W., Tuke, S., & Wilkinson, K. (2020). Influence of partial dealcoholization on the composition and sensory properties of Cabernet Sauvignon wines. Food Chemistry, 325, 126869-1-126869-8. Scopus31 WoS30 Europe PMC14 |
| 2019 | Pham, D. -T., Stockdale, V. J., Jeffery, D. W., Tuke, J., & Wilkinson, K. L. (2019). Investigating alcohol sweetspot phenomena in reduced alcohol red wines. Foods (Basel, Switzerland), 8(10), 1-12. Scopus7 WoS6 Europe PMC2 |
| 2019 | Glonek, M., Tuke, J., Mitchell, L., & Bean, N. G. (2019). Semi-supervised graph labelling reveals increasing partisanship in the United States Congress.. CoRR, abs/1904.01153. |
| 2019 | Coller, J. K., Ramachandran, J., John, L., Tuke, J., Wigg, A., & Doogue, M. (2019). The impact of liver transplant recipient and donor genetic variability on tacrolimus exposure and transplant outcome. British Journal of Clinical Pharmacology, 85(9), 2170-2175. Scopus15 WoS15 Europe PMC13 |
| 2019 | Sallustio, B. C., Noll, B. D., Coller, J. K., Tuke, J., Russ, G., & Somogyi, A. A. (2019). Relationship between allograft cyclosporin concentrations and P-glycoprotein expression in the 1st month following renal transplantation. British Journal of Clinical Pharmacology, 85(5), 1015-1020. Scopus5 WoS3 Europe PMC4 |
| 2019 | Glonek, M., Tuke, J., Mitchell, L., & Bean, N. (2019). Semi-supervised graph labelling reveals increasing partisanship in the United States Congress. Applied Network Science, 4(1), 62-1-62-18. Scopus1 WoS1 |
| 2018 | Hazel, S., Jenvey, C., & Tuke, J. (2018). Online relinquishments of dogs and cats in Australia. Animals, 8(2), 19 pages. Scopus12 WoS12 Europe PMC9 |
| 2018 | Peirce, E., McLennan, H., Tuke, J., Leigh, C., & Breed, W. (2018). Evolution of the testis and spermatozoon in mice and rats (Subfamily Murinae) in the absence of sperm competition. Journal of Zoology, 306(1), 58-68. Scopus5 WoS5 |
| 2018 | Price, D. J., Bean, N. G., Ross, J. V., & Tuke, J. (2018). Designing group dose-response studies in the presence of transmission. Mathematical Biosciences, 304, 62-78. Scopus3 WoS3 Europe PMC5 |
| 2018 | Md Dom, Z., Coller, J., Carroll, R., Tuke, J., McWhinney, B., Somogyi, A., & Sallustio, B. (2018). Mycophenolic acid concentrations in peripheral blood mononuclear cells are associated with the incidence of rejection in renal transplant recipients. British Journal of Clinical Pharmacology, 84(10), 2433-2442. Scopus19 WoS17 Europe PMC18 |
| 2018 | Price, D., Bean, N., Ross, J., & Tuke, J. (2018). An induced natural selection heuristic for finding optimal Bayesian experimental designs. Computational Statistics and Data Analysis, 126(C), 112-124. Scopus14 WoS11 |
| 2018 | Edwards, M., Mitchell, L., Tuke, J., & Roughan, M. (2018). The one comparing narrative social network extraction techniques.. CoRR, abs/1811.01467. |
| 2017 | Lehmann, H., Musk, G., Laurence, M., Bech-Gleerup, K., Collins, T., Hyndman, T., . . . Johnson, C. (2017). Lidocaine or meloxicam analgesia decrease nociception as indicated by cardiovascular responses of halothane-anaesthetized Bos indicus bull calves during surgical castration. Veterinary Anaesthesia and Analgesia, 44(1), 195.e7. |
| 2017 | Marum, J., Yeung, D., Purins, L., Reynolds, J., Parker, W., Stangl, D., . . . Branford, S. (2017). ASXL1 and BIM germ line variants predict response and identify CML patients with the greatest risk of imatinib failure. Blood Advances, 1(18), 1369-1381. Scopus21 WoS17 Europe PMC20 |
| 2017 | Musk, G., Jacobsen, S., Hyndman, T., Lehmann, H., Tuke, S., Collins, T., . . . Laurence, M. (2017). Objective measures for the assessment of post-operative pain in bos indicus bull calves following castration. Animals, 7(10), 76-1-76-15. Scopus13 WoS12 Europe PMC11 |
| 2017 | Chen, K., Glonek, G., Hansen, A., Williams, S., Tuke, J., Salter, A., & Bi, P. (2017). Reply to 'Comments on the effects of air pollution on asthma hospital admissions in Adelaide, South Australia, 2003-2013: time series and case-crossover analyses'.. Clin Exp Allergy, 47(1), 141. |
| 2017 | Weaver, T., Valcanis, M., Mercoulia, K., Sait, M., Tuke, J., Kiermeier, A., . . . Billman-Jacobe, H. (2017). Longitudinal study of Salmonella 1,4,[5],12:i:- shedding in five Australian pig herds. Preventive Veterinary Medicine, 136, 19-28. Scopus17 WoS17 Europe PMC15 |
| 2017 | Tan, T., Tuke, J., & Musk, G. (2017). Nasopharyngeal temperature measurement in sheep during general anesthesia. Canadian Journal of Veterinary Research, 81(1), 64-68. Scopus2 WoS1 Europe PMC1 |
| 2017 | Tobler, R., Rohrlach, A., Soubrier, J., Bover Arbos, P., Llamas, B., Tuke, J., . . . Cooper, A. (2017). Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia. Nature, 544(7649), 180-184. Scopus167 WoS153 Europe PMC67 |
| 2017 | Lehmann, H., Musk, G., Laurence, M., Hyndman, T., Tuke, J., Collins, T., . . . Johnson, C. (2017). Mitigation of electroencephalographic and cardiovascular responses to castration in Bos indicus bulls following the administration of either lidocaine or meloxicam. Veterinary Anaesthesia and Analgesia, 44(6), 1341-1352. Scopus15 WoS13 Europe PMC9 |
| 2017 | Crotty, S., Minh, B. Q., Bean, N., Holland, B., Tuke, J., Jermiin, L., & Haeseler, A. V. (2017). GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments. Biorxiv. |
| 2017 | Musk, G., Laurence, M., Collins, T., Tuke, J., & Hyndman, T. (2017). Mechanical nociceptive threshold testing in Bos indicus bull calves. Animal Production Science, 57(3), 576-582. Scopus8 WoS7 |
| 2016 | Delacroix, S., Chokka, R., Nelson, A., Sidharta, S., Teo, K., Tuke, J., . . . Worthley, S. (2016). SAFETY AND EFFICACY OF PRO ANP 31-67 IN CARDIORENAL SYNDROME: A FIRST-IN-HUMAN TRIAL. JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY, 67(13), 1351. WoS2 |
| 2016 | Chen, K., Glonek, G., Hansen, A., Williams, S., Tuke, J., Salter, A., & Bi, P. (2016). The effects of air pollution on asthma hospital admissions in Adelaide, South Australia, 2003–2013: time-series and case–crossover analyses. Clinical and Experimental Allergy, 46(11), 1416-1430. Scopus82 WoS79 Europe PMC54 |
| 2016 | Price, D. J., Bean, N. G., Ross, J. V., & Tuke, J. (2016). On the efficient determination of optimal Bayesian experimental designs using ABC: a case study in optimal observation of epidemics. Journal of Statistical Planning and Inference, 172, 1-15. Scopus13 WoS11 |
| 2016 | Musk, G., Costa, R., & Tuke, J. (2016). Body temperature measurements in pigs during general anaesthesia. Laboratory Animals, 50(2), 119-124. Scopus11 WoS10 Europe PMC9 |
| 2016 | McLennan, H., Tuke, J., & Breed, W. (2016). The Gerbil Spermatozoon - interspecific variation in morphology does not invariably follow murine rodent evolutionary trends in response to predicted intermale sperm competition. Acta Zoologica, 97(3), 361-369. Scopus1 WoS1 |
| 2016 | Rasi Ghaemi, S., Delalat, B., Cetó, X., Harding, F., Tuke, J., & Voelcker, N. (2016). Synergistic influence of collagen I and BMP 2 drives osteogenic differentiation of mesenchymal stem cells: a cell microarray analysis. Acta Biomaterialia, 34, 41-52. Scopus45 WoS40 Europe PMC28 |
| 2016 | Erbas, B., Shrestha, S. K., Dharmage, S. C., Katelaris, C., Davies, J., & Abramson, M. J. (2016). The effects of Air Pollution on asthma Hospital admissions in Adelaide, South Australia, 2003-2013: time series and case-crossover analysis. CLINICAL AND EXPERIMENTAL ALLERGY, 46(12), 1623-1624. WoS5 Europe PMC3 |
| 2015 | Johnson, J. L., Kwok, Y. H., Sumracki, N. M., Swift, J. E., Hutchinson, M. R., Johnson, K., . . . Rolan, P. E. (2015). Glial attenuation with ibudilast in the treatment of medication overuse headache: a double-blind, randomized, placebo-controlled pilot trial of efficacy and safety. Headache, 55(9), 1192-1208. Scopus21 WoS19 Europe PMC14 |
| 2015 | Tuke, J., & Roughan, M. (2015). All networks look the same to me: Testing for homogeneity in networks.. CoRR, abs/1512.00877. |
| 2015 | Coller, J., White, I., Logan, R., Tuke, J., Richards, A., Mead, K., . . . Bowen, J. (2015). Predictive model for risk of severe gastrointestinal toxicity following chemotherapy using patient immune genetics and type of cancer: a pilot study. Supportive Care in Cancer, 23(5), 1233-1236. Scopus19 WoS18 Europe PMC12 |
| 2015 | Corrigan, F., Wu, Y., Tuke, J., Coller, J., Rice, K., Diener, K., . . . Hutchinson, M. (2015). Alcohol-induced sedation and synergistic interactions between alcohol and morphine: a key mechanistic role for Toll-like receptors and MyD88-dependent signaling. Brain, Behavior, and Immunity, 45, 245-252. Scopus22 WoS22 Europe PMC21 |
| 2015 | Roughan, M., & Tuke, S. (2015). Unravelling Graph-Exchange File Formats.. CoRR, abs/1503.02781. |
| 2014 | Johnson, J., Rolan, P., Johnson, M., Bobrovskaya, L., Williams, D., Johnson, K., . . . Hutchinson, M. (2014). Codeine-induced hyperalgesia and allodynia: investigating the role of glial activation. Translational Psychiatry, 4(e482), e482-1-e482-9. Scopus34 WoS32 Europe PMC32 |
| 2014 | Barratt, D., Bandak, B., Klepstad, P., Dale, O., Kaasa, S., Christrup, L., . . . Somogyi, A. (2014). Genetic, pathological and physiological determinants of transdermal fentanyl pharmacokinetics in 620 cancer patients of the EPOS study. Pharmacogenetics and Genomics, 24(4), 185-194. Scopus54 WoS44 Europe PMC38 |
| 2014 | Musk, G., Costa, R., & Tuke, J. (2014). Doppler blood pressure measurement in pigs during anaesthesia. Research in Veterinary Science, 97(1), 129-131. Scopus10 WoS7 Europe PMC1 |
| 2014 | Sheng, G., Soubrier, J., Liu, J., Werdelin, L., Llamas, B., Thomson, V., . . . Cooper, A. (2014). Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta. Molecular Ecology, 23(3), 522-533. Scopus37 WoS31 Europe PMC12 |
| 2014 | Musk, G., Murdoch, F., Tuke, J., Kemp, M., Dixon, M., & Taylor, P. (2014). Thermal and mechanical nociceptive threshold testing in pregnant sheep. Veterinary Anaesthesia and Analgesia, 41(3), 305-311. Scopus24 WoS22 Europe PMC14 |
| 2014 | Nicotra, L., Tuke, S., Grace, P., Rolan, P., & Hutchinson, M. (2014). Sex differences in mechanical allodynia: how can it be preclinically quantified and analyzed?. Frontiers in Behavioral Neuroscience, 8(February), 1-16. Scopus47 WoS45 Europe PMC42 |
| 2013 | Kwok, Y., Tuke, S., Nicotra, L., Grace, P., Rolan, P., & Hutchinson, M. (2013). TLR 2 and 4 responsiveness from isolated peripheral blood mononuclear cells from rats and humans as potential chronic pain biomarkers. PLoS One, 8(10), 1-16. Scopus21 WoS18 Europe PMC21 |
| 2013 | Kutyla, M., Boehm, M., Stokes, J., Shaw, P., Davies, N., McGeary, R., . . . Ross, B. (2013). Cyclodextrin-crosslinked poly(acrylic acid): Adhesion and controlled release of diflunisal and fluconazole from solid dosage forms. AAPS PharmSciTech, 14(1), 301-311. Scopus15 WoS14 Europe PMC10 |
| 2013 | Hutchinson, M., Bujis, M., Tuke, S., Kwok, Y., Gentgall, M., Williams, D., & Rolan, P. (2013). Low-dose endotoxin potentiates capsaicin-induced pain in man: evidence for a pain neuroimmune connection. Brain Behavior and Immunity, 30, 3-11. Scopus61 WoS58 Europe PMC53 |
| 2012 | Binder, B., HackettJones, E., Tuke, S., & Landman, K. (2012). A modified Pólya urn process and an index for spatial distributions with volume exclusion. The ANZIAM Journal, 53(2), 122-133. Scopus3 WoS3 |
| 2012 | Tuke, J., Glonek, G. F. V., & Solomon, P. J. (2012). P-values, q-values and posterior probabilities for equivalence in genomics studies. |
| 2009 | Tuke, S., Glonek, G., & Solomon, P. (2009). Gene profiling for determining pluripotent genes in a time course microarray experiment. Biostatistics, 10(1), 80-93. Scopus10 WoS10 Europe PMC7 |
| 2007 | Bruce, W., Rose, A., Tuke, S., & Robins, G. (2007). Evaluation of the triple tibial osteotomy. A new technique for the management of the canine cruciate-deficient stifle. Veterinary and Comparative Orthopaedics and Traumatology, 20(3), 159-168. Scopus58 WoS51 Europe PMC30 |
| Year | Citation |
|---|---|
| 2019 | Metcalfe, A., Green, D., Greenfield, T., Mansor, M., Smith, A., & Tuke, J. (2019). Statistics in Engineering: With Examples in MATLAB® and R, Second Edition. Chapman and Hall/CRC. DOI Scopus14 |
| Year | Citation |
|---|---|
| 2024 | Watt, J., Mitchell, L., & Tuke, J. (2024). Personality Profiling: How informative are social media profiles in predicting personal information?. In ALTA 2024 - Proceedings of the 22nd Annual Workshop of the Australasian Language Technology Association (pp. 153-163). Canberra, Australia: Association for Computational Linguistics (ACL). |
| 2024 | Watt, J., Mitchell, L., & Tuke, J. (2024). Personality Profiling: How informative are social media profiles in predicting personal information?. In Proceedings of the Australasian Language Technology Workshop Vol. 22 (pp. 153-163). Canberra, Australia: Australasian Language Technology Association. |
| 2023 | Watt, J., Tuke, J., & Mitchell, L. (2023). Personality Profiling: How informative are social media profiles in predicting personal information?. In CoRR Vol. abs/2309.13065. |
| 2021 | Murray, C., Mitchell, L., Tuke, S. J., & Mackay, M. (2021). Symptom Extraction from the Narratives of Personal Experiences with COVID-19 on Reddit.. In O. Balalau, K. Ognyanova, & D. M. Romero (Eds.), ICWSM Workshops. |
| 2021 | Murray, C., Mitchell, L., Tuke, S. J., & Mackay, M. (2021). Symptom extraction from the narratives of personal experiences with COVID-19 on Reddit. In Workshop Proceedings of the 15th International AAAI Conference on Web and Social Media (ICWSM 2021) Vol. abs/2005.10454 (pp. 1-10). California, USA: Association for the Advancement of Artificial Intelligence Press. DOI |
| 2020 | Edwards, M., Tuke, S., Roughan, M., & Mitchell, L. (2020). The one comparing narrative social network extraction techniques. In M. Atzmüller, M. Coscia, & R. Missaoui (Eds.), Proceedings of the IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM2020) (pp. 905-913). online: IEEE. DOI Scopus9 WoS5 |
| 2020 | Dennis-Henderson, A., Roughan, M., Mitchell, L., & Tuke, S. (2020). Life still goes on: Analysing Australian WW1 Diaries through Distant Reading. In Proceedings of the 4th Joint SIGHUM Workshop on Computational Linguistics for Cultural Heritage, Social Sciences, Humanities and Literature. Barcelona, Spain (Online). |
| 2019 | Roughan, M., Tuke, J., & Parsonage, E. (2019). Estimating the parameters of the Waxman random graph. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 11631 LNCS (pp. 71-86). Switzerland: Springer. DOI Scopus1 WoS1 |
| 2019 | Nguyen, A., South, T., Bean, N., Tuke, S. J., & Mitchell, L. (2019). Podlab at SemEval-2019 Task 3: The Importance of Being Shallow. In Proceedings of the 13th International Workshop on Semantic Evaluation (pp. 292-296). online: The Association for Computational Linguistics. DOI |
| 2019 | Glonek, M., Tuke, S., Mitchell, L., & Bean, N. (2019). GLaSS: Semi-supervised graph labelling with Markov random walks to absorption. In Proceedings of the 7th International Conference on Complex Networks and Their Applications (COMPLEX NETWORKS 2018), as published in Complex Networks and Their Applications VII: Volume 1 Vol. 812 (pp. 304-315). Cham, Switzerland: Springer. DOI Scopus1 |
| 2019 | Glenny, V., Tuke, J., Bean, N., & Mitchell, L. (2019). A framework for streamlined statistical prediction using topic models. In Proceedings of the 3rd Joint SIGHUM Workshop on Computational Linguistics for Cultural Heritage, Social Sciences, Humanities and Literature Vol. abs/1904.06941 (pp. 61-70). Minneapolis, MN: Association for Computational Linguistics. DOI Scopus1 |
| 2019 | Michaelson, G., Roughan, M., Tuke, J., Wand, M. P., & Bush, R. (2019). Rasch analysis of HTTPS reachability. In Proceedings of the IFIP Networking Conference 2018 (pp. 1-9). New York: IEEE. DOI |
| 2018 | Korver, S. K., Bowen, J. M., Ball, I. A., Gibson, R. J., Tuke, J., Logan, R., . . . Coller, J. K. (2018). Personalised supportive care for patients receiving 5-fluorouracil (5-FU): analysis of multivariate SNP risk prediction for GI toxicity. In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY Vol. 14 (pp. 58-59). WILEY. |
| 2018 | Michaelson, G., Roughan, M., Tuke, J., Wand, M. P., & Bush, R. (2018). Rasch analysis of HTTPS reachability. In C. Casetti, F. Kuipers, J. P. G. Sterbenz, & B. Stiller (Eds.), 17th International IFIP TC6 Networking Conference, Networking 2018 (pp. 1-9). Switzerland: IFIP Open Digital Library. |
| 2015 | Roughan, M., & Tuke, J. (2015). The hitchhikers guide to sharing graph data. In Proceedings of the 3rd International Conference on Future Internet of Things and Cloud, FiCloud and 2015 International Conference on Open and Big Data, OBD 2015 (pp. 435-442). Rome, italy: IEEE. DOI Scopus3 WoS1 |
| 2015 | Marum, J. E., Purins, L., Yeung, D. T., Parker, W. T., Price, D. J., Wang, P. P. S., . . . Branford, S. (2015). Germline Genetic Variation of ASXL1 and BIM Predicts Response to Imatinib and Identifies a Subset of High Sokal Risk Patients with the Greatest Risk of Treatment Failure and Disease Progression. In BLOOD Vol. 126 (pp. 4 pages). Orlando, FL: AMER SOC HEMATOLOGY. DOI |
| 2013 | Marshall, V., Ostendorf, B., Reynolds, T., Michaela, H., Tuke, J., & Lewis, M. (2013). Habitat suitability and susceptibility modeling for strategic control of invasive Buffel grass, South Australia. In Proceedings of the 20th International Congress on Modelling and Simulation, MODSIM 2013 (pp. 1917-1923). Australia: The Modelling and Simulation Society of Aust & NZ. Scopus1 WoS1 |
| 2010 | Pearce, C., Cohen, S., & Tuke, S. (2010). New Zealand palaeodemography: pitfalls & possibilities. In BIOMAT 2009 (pp. 194-212). PO Box 128 Farrer Rd, Singapore 9128: World Scientific Publ Co Pte Ltd. DOI |
| 2008 | Roughan, M., Tuke, S., & Maennel, O. (2008). Bigfoot, Sasquatch, the Yeti and other missing links: what we don't know about the AS graph. In Proceedings of the Internet Measurement Conference (pp. 1-8). USA: IEEE. DOI Scopus41 WoS17 |
| Year | Citation |
|---|---|
| 2019 | Coller, J. K., Korver, S. K., Ball, I. A., Gibson, R. J., Tuke, J., Logan, R. M., . . . Bowen, J. M. (2019). Predictors of severe gastrointestinal toxicity risk in patients treated with 5-fluorouracil-based chemotherapy: A validation study. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY. |
| 2019 | Glenny, V. G., Tuke, J., Bean, N. G., & Mitchell, L. (2019). A framework for streamlined statistical prediction using topic models.. Poster session presented at the meeting of LaTeCH@NAACL-HLT. Association for Computational Linguistics. |
| 2017 | Bowen, J., Ball, I., Thompson, S., Irvine, T., Chiam, K., Hussey, D., . . . Keefe, D. (2017). Identification of Inflammatory Markers of Chemoradiotherapy-Induced Gastrointestinal Toxicity in Oesophageal Cancer. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY. |
| 2017 | Korver, S. K., Ball, I. A., Gibson, R. J., Tuke, J., Logan, R. M., Richards, A., . . . Coller, J. K. (2017). Interleukin-1 Beta (<i>IL1B</i>) Genetic Variability is Predictive of Chemotherapy-Induced Gastrointestinal Toxicity (CIGT) Risk in Patients Receiving 5-Fluorouracil. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY. |
| 2013 | Rolan, P. E., Hutchinson, M. R., Buijs, M., Tuke, J., Kwok, Y. H., Gentgall, M., . . . Nillsen, N. (2013). First demonstration of the neuroimmune link in humans using IV Endotoxin and Intradermal Capsaicin in the face and arm. Poster session presented at the meeting of JOURNAL OF HEADACHE AND PAIN. SPRINGER-VERLAG ITALIA SRL. DOI |
| 2013 | Bowen, J., White, I., Tuke, J., Logan, R., Richards, A., Mead, K., . . . Coller, J. (2013). IMMUNE GENETIC VARIABILITY IS ASSOCIATED WITH RISK OF SEVERE GASTROINTESTINAL TOXICITY IN PATIENTS TREATED WITH FLUOROURACIL. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY-BLACKWELL. |
| 2013 | Coller, J., Tuke, J., Ramachandran, J., Wigg, A. J., & Doogue, M. (2013). Relationship between CYP3A5, ABCB1 and immune genetics and tacrolimus concentrations, and the occurrence of nephrotoxicity and rejection following liver transplantation. Poster session presented at the meeting of HEPATOLOGY. Washington, DC: WILEY-BLACKWELL. |
| 2012 | Coller, J., Hutchinson, M., Tuke, J., White, J., & Somogyi, A. (2012). 65. Association between immune genetic markers and opioid dependence. Poster session presented at the meeting of Brain, Behavior, and Immunity. DOI |
| Year | Citation |
|---|---|
| - | Vozzo, R., Tuke, S., Johnson, S., & Evans, T. (n.d.). Active Learning at Scale: Investigating the Benefits of Peer Instruction in Undergraduate Mathematics. DOI |
| Year | Citation |
|---|---|
| - | Tuke, S. (n.d.). Classification of topic videos. DOI |
| Year | Citation |
|---|---|
| 2025 | Rohrlach, A., Gnecchi-Ruscone, G. A., Hofmanová, Z., Roughan, M., Haak, W., & Tuke, J. (2025). Detecting and Quantifying Networks of Biological Kinship via Exponential Family Random Graph Models. DOI |
| 2024 | Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2024). Probabilistic emotion and sentiment modelling of patient-reported experiences.. |
| 2024 | Vozzo, R., Johnson, S., Tuke, J., & Evans, T. (2024). Active Learning at Scale: Investigating the Benefits of Peer Instruction in Undergraduate Mathematics. |
| 2017 | Michaelson, G., Roughan, M., Tuke, J., Wand, M. P., & Bush, R. (2017). Rigorous statistical analysis of HTTPS reachability.. |
| Date | Role | Research Topic | Program | Degree Type | Student Load | Student Name |
|---|---|---|---|---|---|---|
| 2024 | Co-Supervisor | Monitoring chronic pain using smart devices | Master of Philosophy | Master | Full Time | Miss Joan Shu Ting Lim |
| 2024 | Co-Supervisor | Teaching old dogs new tricks to fight the signs of canine cognitive dysfunction | Doctor of Philosophy | Doctorate | Full Time | Ms Tracey Louise Taylor |
| 2024 | Co-Supervisor | Teaching old dogs new tricks to fight the signs of canine cognitive dysfunction | Doctor of Philosophy | Doctorate | Full Time | Ms Tracey Louise Taylor |
| 2024 | Co-Supervisor | Monitoring chronic pain using smart devices | Master of Philosophy | Master | Full Time | Miss Joan Shu Ting Lim |
| 2023 | Principal Supervisor | Predicting Clinical Need During Dispatch to Guide Ambulance Response | Doctor of Philosophy | Doctorate | Part Time | Mr Trevor Paul Matthews |
| 2023 | Principal Supervisor | Predicting Clinical Need During Dispatch to Guide Ambulance Response | Doctor of Philosophy | Doctorate | Part Time | Mr Trevor Paul Matthews |
| 2022 | Co-Supervisor | Large-scale social media sentiment analysis as a predictor of public behaviour in Australia. | Doctor of Philosophy | Doctorate | Part Time | Miss Saranzaya Magsarjav |
| 2022 | Co-Supervisor | Large-scale social media sentiment analysis as a predictor of public behaviour in Australia. | Doctor of Philosophy | Doctorate | Part Time | Miss Saranzaya Magsarjav |
| 2021 | Co-Supervisor | Analysis of Historical Texts using Natural Language Processing | Doctor of Philosophy | Doctorate | Full Time | Miss Ashley Grace Dennis-Henderson |
| 2021 | Co-Supervisor | Analysis of Historical Texts using Natural Language Processing | Doctor of Philosophy | Doctorate | Full Time | Miss Ashley Grace Dennis-Henderson |
| Date | Role | Research Topic | Program | Degree Type | Student Load | Student Name |
|---|---|---|---|---|---|---|
| 2023 - 2025 | Principal Supervisor | Domain-Specific Sentiment Analysis of Historical Australian Parliamentary Speeches | Master of Philosophy | Master | Full Time | Mr William Pincombe |
| 2021 - 2023 | Co-Supervisor | The Application of Social Media in Modern-Day Influence Campaigns: Personality Profiling and Information Warfare | Master of Philosophy | Master | Full Time | Mr Joshua Watt |
| 2020 - 2025 | Co-Supervisor | Natural Language Processing Reveals Patient Reported Experiences | Doctor of Philosophy | Doctorate | Full Time | Mr Curtis William Murray |
| 2019 - 2021 | Principal Supervisor | A Machine Learning Approach for Detecting Selective Sweeps using Ancient DNA | Master of Philosophy | Master | Full Time | Mr Shing Yan Kwong |
| 2019 - 2023 | Co-Supervisor | Riemannian statistical techniques with applications in fMRI | Doctor of Philosophy | Doctorate | Full Time | Mr Matthew James Ryan |
| 2019 - 2021 | Co-Supervisor | Statistical Methods for Comparison of Forensic Glass Samples in Australia | Master of Philosophy | Master | Full Time | Mr Oliver James Lountain |
| 2018 - 2022 | Principal Supervisor | Statistical modelling of queueing systems | Doctor of Philosophy | Doctorate | Full Time | Miss Sarah Ellen James |
| 2018 - 2020 | Co-Supervisor | Analysis of Historical Texts using Natural Language Processing | Doctor of Philosophy | Master | Full Time | Miss Ashley Grace Dennis-Henderson |
| 2017 - 2019 | Principal Supervisor | Explanatory statistical modelling of influences of demographic experience on political identity | Master of Philosophy | Master | Full Time | Mr Lachlann Bradley McArthur |
| 2017 - 2019 | Principal Supervisor | Longitudinal Data Analysis for Improving Patient Outcomes Following Hip Replacement Surgery | Master of Philosophy | Master | Full Time | Miss Bethany Pamela Phipps |
| 2017 - 2019 | Co-Supervisor | The One with the Social Network Analysis: The Extraction, Analysis and Modelling of Temporal Social Networks from Narratives | Master of Philosophy | Master | Full Time | Miss Michelle Claire Edwards |
| 2016 - 2018 | Co-Supervisor | A methodology for predictive topic modelling; or, any excuse to watch Love Actually | Master of Philosophy | Master | Full Time | Miss Vanessa Grace Glenny |
| 2015 - 2017 | Co-Supervisor | Consensus Sequence Estimation Methods for DNA Sequence Data Sets | Master of Philosophy | Master | Full Time | Miss Sarah Ellen James |
| 2014 - 2016 | Principal Supervisor | Inference for Epidemics on Networks | Master of Philosophy | Master | Full Time | Mr Brock Anthony Hermans |
| 2014 - 2019 | Co-Supervisor | Statistical Methods for Identifying Demographic Structure in DNA Sequence Alignments | Doctor of Philosophy | Doctorate | Part Time | Dr Adam Rohrlach |
| 2013 - 2015 | Co-Supervisor | On the Advancement of Optimal Experimental Design with Applications to Infectious Diseases | Doctor of Philosophy | Doctorate | Full Time | David James Price |
| 2013 - 2016 | Co-Supervisor | A Simulation Study to Compare Gene Set Analysis Methods | Master of Philosophy | Master | Full Time | Mr Andrew James Pfeiffer |
| 2012 - 2014 | Co-Supervisor | Data Driven Model Selection and Parameter Estimation Using Semi-Automatic Approximate Bayesian Computation to Reconstruct Population Dynamics from Ancient DNA | Master of Philosophy | Master | Full Time | Dr Adam Rohrlach |
| 2012 - 2015 | Co-Supervisor | Using Aggregated Demographic Data to Inform Electoral Boundary Redistributions: 2010 South Australian Election | Master of Philosophy | Master | Part Time | Mr Casey Simon Briggs |
| 2012 - 2017 | Co-Supervisor | GHOST: A Time-reversible Mixture Model for Recovering Phylogenetic Signal from Heterotachously-evolved Sequence Alignments | Doctor of Philosophy | Doctorate | Full Time | Mr Stephen Crotty |
| 2011 - 2013 | Co-Supervisor | Mathematical Modelling and Statistical Analysis of School-Based Student Performance Data | Master of Philosophy | Master | Full Time | Mrs Jessica Jolley |
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