Mark Jenkinson

Professor Mark Jenkinson

Professor of Neuro-Imaging

School of Computer Science

Faculty of Sciences, Engineering and Technology

Eligible to supervise Masters and PhD - email supervisor to discuss availability.


Medical image analysis methodology - particularly applied to MRI brain imaging data. Specialist in: Segmentation of Anatomy and Pathology; Big Data Analysis; Normative Modelling; Registration and Motion Correction of MRI/FMRI Brain Images; Modelling and Reduction of MR Artefacts.

  • Appointments

    Date Position Institution name
    2019 - ongoing Professor of Neuroimaging University of Adelaide
    2014 - ongoing Professor of Neuroimaging University of Oxford
  • Education

    Date Institution name Country Title
    1995 - 1999 University of Oxford United Kingdom DPhil
    1989 - 1994 University of Adelaide Australia BSc (Hons)
    1989 - 1993 University of Adelaide Australia BE (Hons)
  • Journals

    Year Citation
    2022 Milton, A. G., Lau, S., Kremer, K. L., Rao, S. R., Mas, E., Snel, M. F., . . . Koblar, S. A. (2022). FAST-IT: F ind A S imple T est- I n T IA (transient ischaemic attack): a prospective cohort study to develop a multivariable prediction model for diagnosis of TIA through proteomic discovery and candidate lipid mass spectrometry, neuroimaging and machine learning - study protocol. BMJ Open, 12(4), 9 pages.
    DOI
    2022 Sundaresan, V., Arthofer, C., Zamboni, G., Dineen, R. A., Rothwell, P. M., Sotiropoulos, S. N., . . . Griffanti, L. (2022). Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning. Frontiers in Neuroinformatics, 15, 18 pages.
    DOI
    2022 Whitbread, L., & Jenkinson, M. (2022). Uncertainty Categories in Medical Image Segmentation: A Study of Source-Related Diversity. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 13563 LNCS, 26-35.
    DOI
    2022 Dinsdale, N. K., Bluemke, E., Sundaresan, V., Jenkinson, M., Smith, S. M., & Namburete, A. I. L. (2022). Challenges for machine learning in clinical translation of big data imaging studies. Neuron, S0896-6273(22)00817-0.
    DOI
    2022 Hesse, L. S., Aliasi, M., Moser, F., Haak, M. C., Xie, W., Jenkinson, M., & Namburete, A. I. L. (2022). Subcortical segmentation of the fetal brain in 3D ultrasound using deep learning. NeuroImage, 254, 19 pages.
    DOI Scopus5 WoS3
    2022 Balboni, E., Nocetti, L., Carbone, C., Dinsdale, N., Genovese, M., Guidi, G., . . . Zamboni, G. (2022). The impact of transfer learning on 3D deep learning convolutional neural network segmentation of the hippocampus in mild cognitive impairment and Alzheimer disease subjects. Human Brain Mapping, 43(11), 3427-3438.
    DOI Europe PMC1
    2022 Messina, S., Mariano, R., Roca-Fernandez, A., Cavey, A., Jurynczyk, M., Leite, M. I., . . . Palace, J. (2022). Contrasting the brain imaging features of MOG-antibody disease, with AQP4-antibody NMOSD and multiple sclerosis. Multiple Sclerosis Journal, 28(2), 217-227.
    DOI Scopus9 WoS8 Europe PMC3
    2022 Edwards, A. D., Rueckert, D., Smith, S. M., Abo Seada, S., Alansary, A., Almalbis, J., . . . Hajnal, J. V. (2022). The Developing Human Connectome Project Neonatal Data Release. Frontiers in Neuroscience, 16, 886772.
    DOI Scopus2
    2022 Dinsdale, N. K., Jenkinson, M., & Namburete, A. I. L. (2022). STAMP: Simultaneous Training and Model Pruning for low data regimes in medical image segmentation. Medical Image Analysis, 81, 15 pages.
    DOI Scopus1
    2022 Zeng, M., Oakden-Rayner, L., Bird, A., Smith, L., Wu, Z., Scroop, R., . . . Palmer, L. J. (2022). Pre-thrombectomy prognostic prediction of large-vessel ischemic stroke using machine learning: A systematic review and meta-analysis. Frontiers in Neurology, 13, 14 pages.
    DOI
    2022 Bozek, J., Griffanti, L., Lau, S., & Jenkinson, M. (2022). Normative models for neuroimaging markers: Impact of model selection, sample size and evaluation criteria.
    DOI
    2021 Vrenken, H., Jenkinson, M., Pham, D. L., Guttmann, C. R. G., Pareto, D., Paardekooper, M., . . . Barkhof, F. (2021). Opportunities for Understanding MS Mechanisms and Progression With MRI Using Large-Scale Data Sharing and Artificial Intelligence. Neurology, 97(21), 989-999.
    DOI Scopus4 WoS4
    2021 Torso, M., Bozzali, M., Zamboni, G., Jenkinson, M., & Chance, S. A. (2021). Detection of Alzheimer's Disease using cortical diffusion tensor imaging. Human Brain Mapping, 42(4), 967-977.
    DOI Scopus9 WoS10 Europe PMC8
    2021 Juryńczyk, M., Klimiec-Moskal, E., Kong, Y., Hurley, S., Messina, S., Yeo, T., . . . Palace, J. (2021). Elucidating distinct clinico-radiologic signatures in the borderland between neuromyelitis optica and multiple sclerosis. Journal of Neurology, 269(1), 269-279.
    DOI Scopus3 WoS3 Europe PMC1
    2021 Bordin, V., Bertani, I., Mattioli, I., Sundaresan, V., McCarthy, P., Suri, S., . . . Griffanti, L. (2021). Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets. NeuroImage, 237, 118189.
    DOI Scopus3 WoS2 Europe PMC4
    2021 Sundaresan, V., Zamboni, G., Rothwell, P. M., Jenkinson, M., & Griffanti, L. (2021). Triplanar ensemble U-Net model for white matter hyperintensities segmentation on MR images.. Med Image Anal, 73, 1-17.
    DOI Scopus12 WoS8 Europe PMC5
    2021 Sundaresan, V., Zamboni, G., Dinsdale, N. K., Rothwell, P. M., Griffanti, L., & Jenkinson, M. (2021). Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images.. Med Image Anal, 74, 12 pages.
    DOI Scopus5 WoS2 Europe PMC2
    2021 Vass, L., Moore, M. J., Hanayik, T., Mair, G., Pendlebury, S. T., Demeyere, N., & Jenkinson, M. (2021). A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients. Neuroinformatics, 20(3), 12 pages.
    DOI
    2021 Torso, M., Ridgway, G. R., Jenkinson, M., & Chance, S. (2021). Intracortical diffusion tensor imaging signature of microstructural changes in frontotemporal lobar degeneration. Alzheimer's Research and Therapy, 13(1), 15 pages.
    DOI Scopus4 WoS5 Europe PMC1
    2021 Sundaresan, V., Zamboni, G., Dinsdale, N., Rothwell, P., Griffanti, L., & Jenkinson, M. (2021). Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images.
    DOI
    2021 Melazzini, L., Mackay, C. E., Bordin, V., Suri, S., Zsoldos, E., Filippini, N., . . . Griffanti, L. (2021). White matter hyperintensities classified according to intensity and spatial location reveal specific associations with cognitive performance. NeuroImage: Clinical, 30, 1-8.
    DOI Scopus4 WoS3 Europe PMC1
    2021 Dinsdale, N. K., Bluemke, E., Smith, S. M., Arya, Z., Vidaurre, D., Jenkinson, M., & Namburete, A. I. L. (2021). Learning patterns of the ageing brain in MRI using deep convolutional networks. NeuroImage, 224, 1-16.
    DOI Scopus33 WoS29 Europe PMC7
    2021 Dinsdale, N. K., Jenkinson, M., & Namburete, A. I. L. (2021). Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal. NeuroImage, 228, 1-16.
    DOI Scopus22 WoS21 Europe PMC12
    2021 Raman, B., Cassar, M. P., Tunnicliffe, E. M., Filippini, N., Griffanti, L., Alfaro-Almagro, F., . . . Neubauer, S. (2021). Medium-term effects of SARS-CoV-2 infection on multiple vital organs, exercise capacity, cognition, quality of life and mental health, post-hospital discharge. EClinicalMedicine, 31, 1-13.
    DOI Scopus204 WoS207 Europe PMC187
    2021 Hordacre, B., Lotze, M., Jenkinson, M., Lazari, A., Barras, C. D., Boyd, L., & Hillier, S. (2021). Fronto-parietal involvement in chronic stroke motor performance when corticospinal tract integrity is compromised. NeuroImage: Clinical, 29, 1-11.
    DOI Scopus5 WoS5 Europe PMC3
    2021 Boyd, C., Brown, G., Kleinig, T., Dawson, J., McDonnell, M. D., Jenkinson, M., & Bezak, E. (2021). Machine Learning Quantitation of Cardiovascular and Cerebrovascular Disease: A Systematic Review of Clinical Applications. Diagnostics, 11(3), 1-23.
    DOI Scopus7 WoS5 Europe PMC1
    2021 Torso, M., Ahmed, S., Butler, C., Zamboni, G., Jenkinson, M., & Chance, S. (2021). Cortical diffusivity investigation in posterior cortical atrophy and typical Alzheimer’s disease. Journal of Neurology, 268(1), 227-239.
    DOI Scopus5 WoS5 Europe PMC3
    2020 Fitzgibbon, S. P., Harrison, S. J., Jenkinson, M., Baxter, L., Robinson, E. C., Bastiani, M., . . . Andersson, J. (2020). The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants. NeuroImage, 223, 117303.
    DOI Scopus23 WoS26 Europe PMC19
    2020 Messina, S., Mariano, R., Roca-Fernandez, A., Cavey, A., Jurynczyk, M., Leite, M. I., . . . Palace, J. (2020). Contrasting the brain imaging features of MOG-Antibody disease, with AQP4- Antibody NMOSD and Multiple Sclerosis.
    DOI
    2020 Sundaresan, V., Zamboni, G., Rothwell, P., Jenkinson, M., & Griffanti, L. (2020). Triplanar ensemble U-Net model for white matter hyperintensities segmentation on MR images.
    DOI
    2020 Pflanz, C. P., Charquero-Ballester, M., Majid, D. S. A., Winkler, A. M., Vallée, E., Aron, A. R., . . . Douaud, G. (2020). One-year changes in brain microstructure differentiate preclinical Huntington's disease stages. NeuroImage: Clinical, 25, 1-11.
    DOI Scopus4 WoS4 Europe PMC2
    2020 Wang, C., Zhang, Y., Du, J., Huszár, I. N., Liu, S., Chen, Y., . . . Yang, Q. (2020). Quantitative Susceptibility Mapping for Characterization of Intraplaque Hemorrhage and Calcification in Carotid Atherosclerotic Disease. Journal of Magnetic Resonance Imaging, 52(2), 534-541.
    DOI Scopus7 WoS6 Europe PMC5
    2020 Eichert, N., Robinson, E. C., Bryant, K. L., Jbabdi, S., Jenkinson, M., Li, L., . . . Mars, R. B. (2020). Cross-species cortical alignment identifies different types of anatomical reorganization in the primate temporal lobe.. Elife, 9, 1-30.
    DOI Scopus29 WoS30 Europe PMC11
    2020 Keltner, J. R., Tong, A., Visser, E., Jenkinson, M., Connolly, C. G., Dasca, A., . . . Ellis, R. J. (2020). Evidence for a novel subcortical mechanism for posterior cingulate cortex atrophy in HIV peripheral neuropathy. Journal of NeuroVirology, 26(4), 530-543.
    DOI Scopus4 WoS4 Europe PMC3
    2020 Armstrong, N. J., Mather, K. A., Sargurupremraj, M., Knol, M. J., Malik, R., Satizabal, C. L., . . . Wright, C. B. (2020). Common genetic variation indicates separate causes for periventricular and deep white matter hyperintensities. Stroke, 51(7), 2111-2121.
    DOI Scopus32 WoS35 Europe PMC17
    2020 Torso, M., Bozzali, M., Cercignani, M., Jenkinson, M., & Chance, S. A. (2020). Using diffusion tensor imaging to detect cortical changes in fronto-temporal dementia subtypes. Scientific Reports, 10(1), 11 pages.
    DOI Scopus7 WoS5 Europe PMC5
    2020 Pedersen, M., Verspoor, K., Jenkinson, M., Law, M., Abbott, D. F., & Jackson, G. D. (2020). Artificial intelligence for clinical decision support in neurology.. Brain Commun, 2(2), fcaa096.
    DOI Scopus18 Europe PMC10
    2019 Walton, E., Hibar, D., Yilmaz, Z., Jahanshad, N., Cheung, J., Batury, V. -L., . . . Bulik, C. M. (2019). Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. MOLECULAR NEUROBIOLOGY, 56(7), 5146-5156.
    DOI WoS8 Europe PMC5
    2019 Sundaresan, V., Zamboni, G., Le Heron, C., Rothwell, P. M., Husain, M., Battaglini, M., . . . Griffanti, L. (2019). Automated lesion segmentation with BIANCA: Impact of population-level features, classification algorithm and locally adaptive thresholding. NeuroImage, 202, 18 pages.
    DOI Scopus20 WoS17
    2019 McKavanagh, R., Torso, M., Jenkinson, M., Kolasinski, J., Stagg, C. J., Esiri, M. M., . . . Chance, S. A. (2019). Relating diffusion tensor imaging measurements to microstructural quantities in the cerebral cortex in multiple sclerosis. Human Brain Mapping, 40(15), 4417-4431.
    DOI Scopus14 WoS12 Europe PMC9
    2019 Sundaresan, V., Griffanti, L., Kindalova, P., Alfaro-Almagro, F., Zamboni, G., Rothwell, P., . . . Jenkinson, M. (2019). Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference. NeuroImage, 185, 434-445.
    DOI Scopus6 WoS5 Europe PMC4
    2019 Nobis, L., Manohar, S. G., Smith, S. M., Alfaro-Almagro, F., Jenkinson, M., Mackay, C. E., & Husain, M. (2019). Hippocampal volume across age: Nomograms derived from over 19,700 people in UK Biobank. NeuroImage: Clinical, 23, 101904.
    DOI Scopus70 WoS65 Europe PMC34
    2019 Mollink, J., Hiemstra, M., Miller, K. L., Huszar, I. N., Jenkinson, M., Raaphorst, J., . . . van Cappellen van Walsum, A. M. (2019). White matter changes in the perforant path area in patients with amyotrophic lateral sclerosis. Neuropathology and Applied Neurobiology, 45(6), 570-585.
    DOI Scopus12 WoS12 Europe PMC7
    2019 Saillant, A., Armstrong, I., Shah, V., Zuehlsdorff, S., Hayden, C., Declerck, J., . . . Chappell, M. (2019). Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework. IEEE Transactions on Medical Imaging, 38(5), 1216-1226.
    DOI Scopus2 WoS2
    2019 Baxter, L., Fitzgibbon, S., Moultrie, F., Goksan, S., Jenkinson, M., Smith, S., . . . Slater, R. (2019). Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. NeuroImage, 186, 286-300.
    DOI Scopus14 WoS14 Europe PMC10
    2019 Chye, Y., Lorenzetti, V., Suo, C., Batalla, A., Cousijn, J., Goudriaan, A., . . . Solowij, N. (2019). Alteration to hippocampal volume and shape confined to cannabis dependence: a multi-site study. Addiction Biology, 24(4), 822-834.
    DOI Scopus22 WoS23 Europe PMC11
    2018 Schmid, A., Campbell, J., Hurley, S., Jbabdi, S., Andersson, J., Jenkinson, M., . . . Clare, S. (2018). Feasibility of diffusion tensor and morphologic imaging of peripheral nerves at ultra-high field strength. Investigative Radiology, 53(12), 705-713.
    DOI Scopus7 WoS4 Europe PMC3
    2018 Sundaresan, V., Zamboni, G., Le Heron, C., Rothwell, P., Husain, M., Battaglini, M., . . . Griffanti, L. (2018). Automated lesion segmentation with BIANCA: impact of population-level features, classification algorithm and locally adaptive thresholding.
    DOI
    2018 Sundaresan, V., Griffanti, L., Kindalova, P., Alfaro-Almagro, F., Zamboni, G., Rothwell, P., . . . Jenkinson, M. (2018). Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference.
    DOI
    2018 Harston, G., Carone, D., Sheerin, F., Jenkinson, M., & Kennedy, J. (2018). Quantifying Infarct Growth and Secondary Injury Volumes: Comparing Multimodal Image Registration Measures. Stroke, 49(7), 1647-1655.
    DOI Scopus10 WoS10 Europe PMC8
    2018 Bozek, J., Makropoulos, A., Schuh, A., Fitzgibbon, S., Wright, R., Glasser, M., . . . Robinson, E. (2018). Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project. NeuroImage, 179, 11-29.
    DOI Scopus37 WoS32 Europe PMC29
    2018 Zsoldos, E., Filippini, N., Mahmood, A., Mackay, C. E., Singh-Manoux, A., Kivimäki, M., . . . Ebmeier, K. P. (2018). Allostatic load as a predictor of grey matter volume and white matter integrity in old age: the Whitehall II MRI study. Scientific Reports, 8(1), 6411.
    DOI Scopus21 WoS20 Europe PMC12
    2018 Connally, E., Ward, D., Pliatsikas, C., Finnegan, S., Jenkinson, M., Boyles, R., & Watkins, K. (2018). Separation of trait and state in stuttering. Human Brain Mapping, 39(8), 3109-3126.
    DOI Scopus15 WoS13 Europe PMC6
    2018 Williamson, W., Lewandowski, A., Forkert, N., Griffanti, L., Okell, T., Betts, J., . . . Leeson, P. (2018). Association of cardiovascular risk factors with MRI indices of cerebrovascular structure and function and white matter hyperintensities in young adults. JAMA - Journal of the American Medical Association, 320(7), 665-673.
    DOI Scopus66 WoS72 Europe PMC38
    2018 Pallebage-Gamarallage, M., Foxley, S., Menke, R. A. L., Huszar, I. N., Jenkinson, M., Tendler, B. C., . . . Ansorge, O. (2018). Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology. BMC Neuroscience, 19(1), 11.
    DOI Scopus28 WoS27 Europe PMC15
    2018 Makropoulos, A., Robinson, E. C., Schuh, A., Wright, R., Fitzgibbon, S., Bozek, J., . . . Rueckert, D. (2018). The developing human connectome project: a minimal processing pipeline for neonatal cortical surface reconstruction. NeuroImage, 173, 88-112.
    DOI Scopus148 WoS134 Europe PMC99
    2018 Battaglini, M., Jenkinson, M., & De Stefano, N. (2018). SIENA-XL for improving the assessment of gray and white matter volume changes on brain MRI. Human Brain Mapping, 39(3), 1063-1077.
    DOI Scopus14 WoS14 Europe PMC6
    2018 Robinson, E., Garcia, K., Glasser, M., Chen, Z., Coalson, T., Makropoulos, A., . . . Rueckert, D. (2018). Multimodal surface matching with higher-order smoothness constraints. NeuroImage, 167, 453-465.
    DOI Scopus108 WoS103 Europe PMC79
    2018 Alfaro-Almagro, F., Jenkinson, M., Bangerter, N., Andersson, J., Griffanti, L., Douaud, G., . . . Smith, S. (2018). Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank. NeuroImage, 166, 400-424.
    DOI Scopus406 WoS389 Europe PMC210
    2018 Griffanti, L., Jenkinson, M., Suri, S., Zsoldos, E., Mahmood, A., Filippini, N., . . . Zamboni, G. (2018). Classification and characterization of periventricular and deep white matter hyperintensities on MRI: A study in older adults. NeuroImage, 170, 174-181.
    DOI Scopus121 WoS120 Europe PMC64
    2017 Rocca, M., Battaglini, M., Benedict, R., De Stefano, N., Geurts, J., Henry, R., . . . Filippi, M. (2017). Brain MRI atrophy quantification in MS. Neurology, 88(4), 403-413.
    DOI Scopus139 WoS135 Europe PMC66
    2017 Hibar, D. P., Adams, H. H. H., Jahanshad, N., Chauhan, G., Stein, J. L., Hofer, E., . . . Jenkinson, M. (2017). Novel genetic loci associated with hippocampal volume. Nature Communications, 8(1), 13624.
    DOI Scopus163 WoS156 Europe PMC117
    2017 Mollink, J., Kleinnijenhuis, M., Cappellen van Walsum, A., Sotiropoulos, S., Cottaar, M., Mirfin, C., . . . Miller, K. (2017). Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging. NeuroImage, 157, 561-574.
    DOI Scopus91 WoS87 Europe PMC58
    2017 Eippert, F., Kong, Y., Jenkinson, M., Tracey, I., & Brooks, J. C. W. (2017). Denoising spinal cord fMRI data: approaches to acquisition and analysis. NeuroImage, 154, 255-266.
    DOI Scopus33 WoS29 Europe PMC19
    2017 Fabes, J., Matthews, L., Filippini, N., Talbot, K., Jenkinson, M., & Turner, M. R. (2017). Quantitative FLAIR MRI in amyotrophic lateral sclerosis. Academic Radiology, 24(10), 1187-1194.
    DOI Scopus22 WoS20 Europe PMC9
    2017 Keltner, J., Connolly, C., Vaida, F., Jenkinson, M., Fennema-Notestine, C., Archibald, S., . . . Ellis, R. (2017). HIV distal neuropathic pain is associated with smaller ventral posterior cingulate cortex. Pain Medicine (United States), 18(3), 428-440.
    DOI Scopus15 WoS15 Europe PMC10
    2017 Zamboni, G., Griffanti, L., Jenkinson, M., Mazzucco, S., Li, L., Küker, W., . . . Rothwell, P. M. (2017). White Matter Imaging Correlates of Early Cognitive Impairment Detected by the Montreal Cognitive Assessment after Transient Ischemic Attack and Minor Stroke. Stroke, 48(6), 1539-1547.
    DOI Scopus31 WoS30 Europe PMC17
    2017 Graham, M., Drobnjak, I., Jenkinson, M., & Zhang, H. (2017). Quantitative assessment of the susceptibility artefact and its interaction with motion in diffusion MRI. PLoS ONE, 12(10), e0185647.
    DOI Scopus35 WoS35 Europe PMC22
    2017 Wartolowska, K., Bulte, D., Chappell, M., Jenkinson, M., Okell, T., Webster, M., & Carr, A. (2017). Using arterial spin labelling to investigate spontaneous and evoked ongoing musculoskeletal pain. BioRxiv, 11 pages.
    DOI
    2017 Alfaro-Almagro, F., Jenkinson, M., Bangerter, N., Andersson, J., Griffanti, L., Douaud, G., . . . Smith, S. (2017). Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank.
    DOI Europe PMC1
    2017 Gorgolewski, K. J., Alfaro-Almagro, F., Auer, T., Bellec, P., Capotă, M., Chakravarty, M. M., . . . Poldrack, R. A. (2017). BIDS apps: improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Computational Biology, 13(3), e1005209.
    DOI Scopus125 WoS118 Europe PMC68
    2017 Goksan, S., Hartley, C., Hurley, S., Winkler, A., Duff, E., Jenkinson, M., . . . Slater, R. (2017). Optimal echo time for functional MRI of the infant brain identified in response to noxious stimulation. Magnetic Resonance in Medicine, 78(2), 625-631.
    DOI Scopus11 WoS10 Europe PMC6
    2017 Harston, G. W. J., Minks, D., Sheerin, F., Payne, S. J., Chappell, M., Jezzard, P., . . . Kennedy, J. (2017). Optimizing image registration and infarct definition in stroke research. ANNALS OF CLINICAL AND TRANSLATIONAL NEUROLOGY, 4(3), 166-174.
    DOI WoS14 Europe PMC8
    2016 Adams, H. H. H., Hibar, D. P., Chouraki, V., Stein, J. L., Nyquist, P. A., Rentería, M. E., . . . Satizabal, C. L. (2016). Novel genetic loci underlying human intracranial volume identified through genome-wide association. Nature Neuroscience, 19(12), 1569-1582.
    DOI Scopus134 Europe PMC108
    2016 Miller, K., Alfaro-Almagro, F., Bangerter, N., Thomas, D., Yacoub, E., Xu, J., . . . Smith, S. (2016). Multimodal population brain imaging in the UK Biobank prospective epidemiological study. Nature Neuroscience, 19(11), 1523-1536.
    DOI Scopus676 WoS639 Europe PMC407
    2016 Glasser, M. F., Smith, S. M., Marcus, D. S., Andersson, J. L. R., Auerbach, E. J., Behrens, T. E. J., . . . Van Essen, D. C. (2016). The Human Connectome Project's neuroimaging approach. Nature Neuroscience, 19(9), 1175-1187.
    DOI Scopus460 WoS438 Europe PMC316
    2016 Glasser, M., Coalson, T., Robinson, E., Hacker, C., Harwell, J., Yacoub, E., . . . Van Essen, D. (2016). A multi-modal parcellation of human cerebral cortex. Nature, 536(7615), 171-178.
    DOI Scopus1884 WoS1832 Europe PMC1101
    2016 Griffanti, L., Zamboni, G., Khan, A., Li, L., Bonifacio, G., Sundaresan, V., . . . Jenkinson, M. (2016). BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities. NeuroImage, 141, 191-205.
    DOI Scopus179 WoS172 Europe PMC123
    2016 Franke, B., van Hulzen, K. J. E., Arias-Vasquez, A., Bralten, J., Hoogman, M., Klein, M., . . . Jenkinson, M. (2016). Genetic influences on schizophrenia and subcortical brain volumes: Large-scale proof of concept. Nature Neuroscience, 19(3), 420-431.
    DOI Scopus150 Europe PMC107
    2016 Visser, E., Keuken, M., Forstmann, B., & Jenkinson, M. (2016). Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7 T data at young and old age. NeuroImage, 139, 324-336.
    DOI Scopus42 WoS38 Europe PMC26
    2016 Griffanti, L., Wilcock, G. K., Voets, N., Bonifacio, G., MacKay, C. E., Jenkinson, M., & Zamboni, G. (2016). Donepezil Enhances Frontal Functional Connectivity in Alzheimer's Disease: A Pilot Study. Dementia and Geriatric Cognitive Disorders Extra, 6(3), 518-528.
    DOI Scopus14 Europe PMC8
    2016 Thomas, A., Dennis, A., Rawlings, N., Stagg, C., Matthews, L., Morris, M., . . . Johansen-Berg, H. (2016). Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. NeuroImage, 131, 162-170.
    DOI Scopus85 WoS78 Europe PMC55
    2016 Visser, E., Keuken, M., Douaud, G., Gaura, V., Bachoud-Levi, A., Remy, P., . . . Jenkinson, M. (2016). Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool. NeuroImage, 125, 479-497.
    DOI Scopus46 WoS42 Europe PMC30
    2016 Griffanti, L., Rolinski, M., Szewczyk-Krolikowski, K., Menke, R., Filippini, N., Zamboni, G., . . . Mackay, C. (2016). Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease. NeuroImage, 124(Pt A), 704-713.
    DOI Scopus54 WoS51 Europe PMC34
    2016 Faull, O., Jenkinson, M., Ezra, M., & Pattinson, K. (2016). Conditioned respiratory threat in the subdivisions of the human periaqueductal gray. eLife, 5, 19 pages.
    DOI Scopus49 WoS45 Europe PMC24
    2016 Maumet, C., Auer, T., Bowring, A., Chen, G., Das, S., Flandin, G., . . . Nichols, T. E. (2016). Sharing brain mapping statistical results with the neuroimaging data model. Scientific Data, 3(1), 1-15.
    DOI Scopus26 WoS22 Europe PMC12
    2015 Faull, O. K., Jenkinson, M., Clare, S., & Pattinson, K. T. S. (2015). Functional subdivision of the human periaqueductal grey in respiratory control using 7tesla fMRI. NeuroImage, 113, 356-364.
    DOI Scopus51 WoS49 Europe PMC34
    2015 Goksan, S., Hartley, C., Emery, F., Cockrill, N., Poorun, R., Moultrie, F., . . . Slater, R. (2015). fMRI reveals neural activity overlap between adult and infant pain. eLife, 4(4), 1-13.
    DOI Scopus65 WoS91 Europe PMC34
    2015 Hibar, D., Stein, J., Renteria, M., Arias-Vasquez, A., Desrivières, S., Jahanshad, N., . . . Czisch, M. (2015). Common genetic variants influence human subcortical brain structures. Nature, 520(7546), 224-229.
    DOI Scopus533 WoS514 Europe PMC399
    2015 Harrison, S. J., Woolrich, M. W., Robinson, E. C., Glasser, M. F., Beckmann, C. F., Jenkinson, M., & Smith, S. M. (2015). Large-scale probabilistic functional modes from resting state fMRI. NeuroImage, 109, 217-231.
    DOI Scopus56 WoS58 Europe PMC41
    2015 Poynton, C., Jenkinson, M., Adalsteinsson, E., Sullivan, E., Pfefferbaum, A., & Wells, W. (2015). Quantitative susceptibility mapping by inversion of a perturbation field model: Correlation with brain iron in normal aging. IEEE Transactions on Medical Imaging, 34(1), 339-353.
    DOI Scopus22 WoS19 Europe PMC13
    2015 Matthews, L., Kolind, S., Brazier, A., Leite, M., Brooks, J., Traboulsee, A., . . . Palace, J. (2015). Imaging surrogates of disease activity in neuromyelitis optica allow distinction from multiple sclerosis. PLoS ONE, 10(9), e0137715.
    DOI Scopus36 WoS35 Europe PMC20
    2014 Dargan, D., Jenkinson, M. J., & Acton, J. D. (2014). A retrospective review of the Dall-Miles plate for periprosthetic femoral fractures: Twenty-seven cases and a review of the literature. INJURY-INTERNATIONAL JOURNAL OF THE CARE OF THE INJURED, 45(12), 1958-1963.
    DOI WoS13 Europe PMC9
    2014 Levy, A. A. L., Jenkinson, M., Ingram, W., & Allen, M. (2014). Correcting precipitation feature location in general circulation models. Journal of Geophysical Research, 119(23), 13-369.
    DOI Scopus4 WoS4
    2014 Abdollahi, R. O., Kolster, H., Glasser, M. F., Robinson, E. C., Coalson, T. S., Dierker, D., . . . Orban, G. A. (2014). Correspondences between retinotopic areas and myelin maps in human visual cortex. NeuroImage, 99, 509-524.
    DOI Scopus87 WoS79 Europe PMC62
    2014 Sampaio-Baptista, C., Scholz, J., Jenkinson, M., Thomas, A. G., Filippini, N., Smit, G., . . . Johansen-Berg, H. (2014). Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention. NeuroImage, 96, 158-166.
    DOI Scopus54 WoS50 Europe PMC42
    2014 Tziortzi, A., Haber, S., Searle, G., Tsoumpas, C., Long, C., Shotbolt, P., . . . Gunn, R. (2014). Connectivity-based functional analysis of dopamine release in the striatum using diffusion-weighted MRI and positron emission tomography. Cerebral Cortex, 24(5), 1165-1177.
    DOI Scopus200 WoS203 Europe PMC132
    2014 Menke, R. A. L., Szewczyk-Krolikowski, K., Jbabdi, S., Jenkinson, M., Talbot, K., Mackay, C. E., & Hu, M. (2014). Comprehensive morphometry of subcortical grey matter structures in early-stage Parkinson's disease. Human Brain Mapping, 35(4), 1681-1690.
    DOI Scopus70 WoS65 Europe PMC47
    2014 Tijssen, R. H. N., Jenkinson, M., Brooks, J. C. W., Jezzard, P., & Miller, K. L. (2014). Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions. NeuroImage, 84, 394-405.
    DOI Scopus10 WoS8 Europe PMC10
    2014 Levy, A. A. L., Jenkinson, M., Ingram, W., Lambert, F. H., Huntingford, C., & Allen, M. (2014). Increasing the detectability of external influence on precipitation by correcting feature location in GCMs. Journal of Geophysical Research Atmospheres, 119(22), 12-478.
    DOI Scopus5 WoS5
    2014 Mennes, M., Jenkinson, M., Valabregue, R., Buitelaar, J. K., Beckmann, C., & Smith, S. (2014). Optimizing full-brain coverage in human brain MRI through population distributions of brain size. NeuroImage, 98, 513-520.
    DOI Scopus23 WoS21 Europe PMC12
    2014 Robinson, E. C., Jbabdi, S., Glasser, M. F., Andersson, J., Burgess, G. C., Harms, M. P., . . . Jenkinson, M. (2014). MSM: A new flexible framework for multimodal surface matching. NeuroImage, 100, 414-426.
    DOI Scopus286 WoS277 Europe PMC197
    2014 Millington, R., Yasuda, C., Jindahra, P., Jenkinson, M., Barbur, J., Kennard, C., . . . Bridge, H. (2014). Quantifying the pattern of optic tract degeneration in human hemianopia. Journal of Neurology, Neurosurgery and Psychiatry, 85(4), 379-386.
    DOI Scopus26 WoS24 Europe PMC13
    2014 Filippini, N., Zsoldos, E., Haapakoski, R., Sexton, C. E., Mahmood, A., Allan, C. L., . . . Ebmeier, K. P. (2014). Study protocol: The Whitehall II imaging sub-study. BMC Psychiatry, 14(1), 16 pages.
    DOI Scopus55 WoS54 Europe PMC42
    2014 Thompson, P. M., Stein, J. L., Medland, S. E., Hibar, D. P., Vasquez, A. A., Renteria, M. E., . . . Jenkinson, M. (2014). The ENIGMA Consortium: Large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, 8(2), 153-182.
    DOI Scopus475 WoS433 Europe PMC319
    2013 Sotiropoulos, S. N., Jbabdi, S., Xu, J., Andersson, J. L., Moeller, S., Auerbach, E. J., . . . Behrens, T. E. J. (2013). Advances in diffusion MRI acquisition and processing in the Human Connectome Project. NeuroImage, 80, 125-143.
    DOI Scopus569 WoS546 Europe PMC398
    2013 Matthews, L., Marasco, R., Jenkinson, M., Küker, W., Luppe, S., Leite, M. I., . . . Palace, J. (2013). Distinction of seropositive NMO spectrum disorder and MS brain lesion distribution. Neurology, 80(14), 1330-1337.
    DOI Scopus153 WoS137 Europe PMC88
    2013 Levy, A. A. L., Ingram, W., Jenkinson, M., Huntingford, C., Hugo Lambert, F., & Allen, M. (2013). Can correcting feature location in simulated mean climate improve agreement on projected changes?. Geophysical Research Letters, 40(2), 354-358.
    DOI Scopus18 WoS22
    2013 Glasser, M. F., Sotiropoulos, S. N., Wilson, J. A., Coalson, T. S., Fischl, B., Andersson, J. L., . . . Jenkinson, M. (2013). The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage, 80, 105-124.
    DOI Scopus2243 WoS2156 Europe PMC1321
    2013 Stagg, C. J., Knight, S., Jenkinson, M., Maudsley, A. A., & Turner, M. R. (2013). Whole-brain magnetic resonance spectroscopic imaging measures are related to disability in ALS. Neurology, 80(7), 610-615.
    DOI Scopus41 WoS39 Europe PMC32
    2013 Arun, T., Tomassini, V., Sbardella, E., De Ruiter, M. B., Matthews, L., Leite, M. I., . . . Palace, J. (2013). Targeting ASIC1 in primary progressive multiple sclerosis: Evidence of neuroprotection with amiloride. Brain, 136(1), 106-115.
    DOI Scopus102 WoS97 Europe PMC71
    2013 Smith, S. M., Vidaurre, D., Beckmann, C. F., Glasser, M. F., Jenkinson, M., Miller, K. L., . . . Van Essen, D. C. (2013). Functional connectomics from resting-state fMRI. Trends in Cognitive Sciences, 17(12), 666-682.
    DOI Scopus546 WoS528 Europe PMC357
    2013 Brooks, J. C. W., Faull, O. K., Pattinson, K. T. S., & Jenkinson, M. (2013). Physiological noise in brainstem fMRI. Frontiers in Human Neuroscience, 7(OCT), 13 pages.
    DOI Scopus136 WoS133 Europe PMC101
    2013 Vrenken, H., Jenkinson, M., Horsfield, M. A., Battaglini, M., Van Schijndel, R. A., Rostrup, E., . . . De Stefano, N. (2013). Recommendations to improve imaging and analysis of brain lesion load and atrophy in longitudinal studies of multiple sclerosis. Journal of Neurology, 260(10), 2458-2471.
    DOI Scopus89 WoS87 Europe PMC59
    2013 Zamboni, G., Wilcock, G. K., Douaud, G., Drazich, E., McCulloch, E., Filippini, N., . . . MacKay, C. E. (2013). Resting functional connectivity reveals residual functional activity in Alzheimer's disease. Biological Psychiatry, 74(5), 375-383.
    DOI Scopus54 WoS50 Europe PMC35
    2013 Marcus, D. S., Harms, M. P., Snyder, A. Z., Jenkinson, M., Wilson, J. A., Glasser, M. F., . . . Van Essen, D. C. (2013). Human Connectome Project informatics: Quality control, database services, and data visualization. NeuroImage, 80, 202-219.
    DOI Scopus210 WoS200 Europe PMC138
    2013 Heinrich, M. P., Jenkinson, M., Brady, M., & Schnabel, J. A. (2013). MRF-Based deformable registration and ventilation estimation of lung CT. IEEE Transactions on Medical Imaging, 32(7), 1239-1248.
    DOI Scopus169 WoS130 Europe PMC38
    2013 Zamboni, G., Drazich, E., McCulloch, E., Filippini, N., Mackay, C. E., Jenkinson, M., . . . Wilcock, G. K. (2013). Neuroanatomy of impaired self-awareness in Alzheimer's disease and mild cognitive impairment. Cortex, 49(3), 668-678.
    DOI Scopus72 WoS67 Europe PMC43
    2013 Zamboni, G., de Jager, C. A., Drazich, E., Douaud, G., Jenkinson, M., Smith, A. D., . . . Wilcock, G. K. (2013). Structural and functional bases of visuospatial associative memory in older adults. Neurobiology of Aging, 34(3), 961-972.
    DOI Scopus16 WoS14 Europe PMC10
    2013 Robinson, E. C., Jbabdi, S., Andersson, J., Smith, S., Glasser, M. F., Van Essen, D. C., . . . Jenkinson, M. (2013). Multimodal surface matching: Fast and generalisable cortical registration using discrete optimisation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7917 LNCS, 475-486.
    DOI Scopus31 Europe PMC11
    2012 Kolasinski, J., Stagg, C., Chance, S., Deluca, G., Esiri, M., Chang, E., . . . Johansen-Berg, H. (2012). A combined post-mortem magnetic resonance imaging and quantitative histological study of multiple sclerosis pathology. Brain, 135(10), 2938-2951.
    DOI Scopus109 WoS111 Europe PMC76
    2012 Jenkinson, M., Beckmann, C. F., Behrens, T. E. J., Woolrich, M. W., & Smith, S. M. (2012). FSL. NeuroImage, 62(2), 782-790.
    DOI Scopus5897 WoS5747 Europe PMC3828
    2012 Kong, Y., Jenkinson, M., Andersson, J., Tracey, I., & Brooks, J. C. W. (2012). Assessment of physiological noise modelling methods for functional imaging of the spinal cord. NeuroImage, 60(2), 1538-1549.
    DOI Scopus64 WoS58 Europe PMC44
    2012 Smith, S. M., Miller, K. L., Moeller, S., Xu, J., Auerbach, E. J., Woolrich, M. W., . . . Ugurbil, K. (2012). Temporally-independent functional modes of spontaneous brain activity. Proceedings of the National Academy of Sciences of the United States America, 109(8), 3131-3136.
    DOI Scopus550 WoS535 Europe PMC368
    2012 Heinrich, M. P., Jenkinson, M., Bhushan, M., Matin, T., Gleeson, F. V., Brady, S. M., & Schnabel, J. A. (2012). MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration. Medical Image Analysis, 16(7), 1423-1435.
    DOI Scopus409 WoS346 Europe PMC121
    2012 Battaglini, M., Jenkinson, M., & De Stefano, N. (2012). Evaluating and reducing the impact of white matter lesions on brain volume measurements. Human Brain Mapping, 33(9), 2062-2071.
    DOI Scopus219 WoS219 Europe PMC141
    2012 Sexton, C. E., Le Masurier, M., Allan, C. L., Jenkinson, M., McDermott, L., Kalu, U. G., . . . Ebmeier, K. P. (2012). Magnetic resonance imaging in late-life depression: Vascular and glucocorticoid cascade hypotheses. British Journal of Psychiatry, 201(1), 46-51.
    DOI Scopus40 WoS30 Europe PMC24
    2012 Popescu, V., Battaglini, M., Hoogstrate, W. S., Verfaillie, S. C. J., Sluimer, I. C., van Schijndel, R. A., . . . Yousry, T. (2012). Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis. NeuroImage, 61(4), 1484-1494.
    DOI Scopus121 WoS114 Europe PMC74
    2012 Stein, J., Medland, S., Vasquez, A., Hibar, D., Senstad, R., Winkler, A., . . . Mühleisen, T. (2012). Identification of common variants associated with human hippocampal and intracranial volumes. Nature Genetics, 44(5), 552-561.
    DOI Scopus483 WoS462 Europe PMC385
    2012 Brooks, J. C. W., Kong, Y., Lee, M. C., Warnaby, C. E., Wanigasekera, V., Jenkinson, M., & Tracey, I. (2012). Stimulus site and modality dependence of functional activity within the human spinal cord. Journal of Neuroscience, 32(18), 6231-6239.
    DOI Scopus35 WoS32 Europe PMC29
    2012 Tondelli, M., Wilcock, G. K., Nichelli, P., de Jager, C. A., Jenkinson, M., & Zamboni, G. (2012). Structural MRI changes detectable up to ten years before clinical Alzheimer's disease. Neurobiology of Aging, 33(4), 825.e25-825.e36.
    DOI Scopus167 WoS155 Europe PMC85
    2012 Wartolowska, K., Hough, M. G., Jenkinson, M., Andersson, J., Wordsworth, B. P., & Tracey, I. (2012). Structural changes of the brain in rheumatoid arthritis. Arthritis and Rheumatism, 64(2), 371-379.
    DOI Scopus76 WoS73 Europe PMC50
    2012 Kincses, Z. T., Szabó, N., Valálik, I., Kopniczky, Z., Dézsi, L., Klivényi, P., . . . Vécsei, L. (2012). Target identification for stereotactic thalamotomy using diffusion tractography. PLoS ONE, 7(1), 7 pages.
    DOI Scopus29 WoS27 Europe PMC15
    2012 Gelineau-Morel, R., Tomassini, V., Jenkinson, M., Johansen-Berg, H., Matthews, P. M., & Palace, J. (2012). The effect of hypointense white matter lesions on automated gray matter segmentation in multiple sclerosis. Human Brain Mapping, 33(12), 2802-2814.
    DOI Scopus99 WoS97 Europe PMC74
    2011 Sallet, J., Mars, R. B., Noonan, M. P., Andersson, J. L., O'Reilly, J. X., Jbabdi, S., . . . Rushworth, M. F. S. (2011). Social network size affects neural circuits in Macaques. Science, 334(6056), 697-700.
    DOI Scopus304 WoS294 Europe PMC195
    2011 Murphy, K., Van Ginneken, B., Reinhardt, J. M., Kabus, S., Ding, K., Deng, X., . . . Pluim, J. P. W. (2011). Evaluation of registration methods on thoracic CT: The EMPIRE10 challenge. IEEE Transactions on Medical Imaging, 30(11), 1901-1920.
    DOI Scopus332 WoS300 Europe PMC176
    2011 Kincses, Z. T., Ropele, S., Jenkinson, M., Khalil, M., Petrovic, K., Loitfelder, M., . . . Enzinger, C. (2011). Lesion probability mapping to explain clinical deficits and cognitive performance in multiple sclerosis. Multiple Sclerosis Journal, 17(6), 681-689.
    DOI Scopus71 WoS67 Europe PMC42
    2011 Tziortzi, A. C., Searle, G. E., Tzimopoulou, S., Salinas, C., Beaver, J. D., Jenkinson, M., . . . Gunn, R. N. (2011). Imaging dopamine receptors in humans with [<sup>11</sup>C]-(+)-PHNO: Dissection of D3 signal and anatomy. NeuroImage, 54(1), 264-277.
    DOI Scopus307 WoS287 Europe PMC219
    2011 Patenaude, B., Smith, S. M., Kennedy, D. N., & Jenkinson, M. (2011). A Bayesian model of shape and appearance for subcortical brain segmentation. NeuroImage, 56(3), 907-922.
    DOI Scopus1566 WoS1516 Europe PMC1100
    2011 Miller, K. L., Stagg, C. J., Douaud, G., Jbabdi, S., Smith, S. M., Behrens, T. E. J., . . . McNab, J. A. (2011). Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. NeuroImage, 57(1), 167-181.
    DOI Scopus183 WoS177 Europe PMC138
    2011 Nunes, R. G., Drobnjak, I., Clare, S., Jezzard, P., & Jenkinson, M. (2011). Performance of single spin-echo and doubly refocused diffusion-weighted sequences in the presence of eddy current fields with multiple components. Magnetic Resonance Imaging, 29(5), 659-667.
    DOI Scopus7 WoS5 Europe PMC4
    2011 Bishop, C. A., Jenkinson, M., Andersson, J., Declerck, J., & Merhof, D. (2011). Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. NeuroImage, 55(3), 1009-1019.
    DOI Scopus23 WoS20 Europe PMC12
    2011 Marcus, D. S., Harwell, J., Olsen, T., Hodge, M., Glasser, M. F., Prior, F., . . . Van Essen, D. C. (2011). Informatics and data mining tools and strategies for the human connectome project. Frontiers in Neuroinformatics, 5.
    DOI Scopus282
    2010 Zarei, M., Patenaude, B., Damoiseaux, J., Morgese, C., Smith, S., Matthews, P. M., . . . Jenkinson, M. (2010). Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease. NeuroImage, 49(1), 1-8.
    DOI Scopus134 WoS130 Europe PMC89
    2010 Babalola, K. O., Patenaude, B., Aljabar, P., Schnabel, J., Kennedy, D., Crum, W., . . . Rueckert, D. (2010). Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447] (DOI:10.1016/j.neuroimage.2009.05.029). NeuroImage, 49(1), 1152.
    DOI Scopus1 WoS2
    2010 Gallichan, D., Andersson, J. L. R., Jenkinson, M., Robson, M. D., & Miller, K. L. (2010). Reducing distortions in diffusion-weighted echo planar imaging with a dual-echo blip-reversed sequence. Magnetic Resonance in Medicine, 64(2), 382-390.
    DOI Scopus41 WoS41 Europe PMC31
    2010 Drobnjak, I., Pell, G. S., & Jenkinson, M. (2010). Simulating the effects of time-varying magnetic fields with a realistic simulated scanner. Magnetic Resonance Imaging, 28(7), 1014-1021.
    DOI Scopus27 WoS25 Europe PMC13
    2010 Zarei, M., Patenaude, B., Damoiseaux, J., Morgese, C., Smith, S., Matthews, P. M., . . . Jenkinson, M. (2010). Erratum to Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease [NeuroImage, 49, (2010), 1-8]. NeuroImage, 51(2), 940.
    DOI Scopus1 WoS1
    2009 Woolrich, M. W., Jbabdi, S., Patenaude, B., Chappell, M., Makni, S., Behrens, T., . . . Smith, S. M. (2009). Bayesian analysis of neuroimaging data in FSL.. NeuroImage, 45(1 Suppl), S173-S186.
    DOI Scopus1628 WoS1380 Europe PMC1092
    2009 Babalola, K. O., Patenaude, B., Aljabar, P., Schnabel, J., Kennedy, D., Crum, W., . . . Rueckert, D. (2009). An evaluation of four automatic methods of segmenting the subcortical structures in the brain. NeuroImage, 47(4), 1435-1447.
    DOI Scopus169 WoS149 Europe PMC77
    2009 Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M. C., . . . Parsey, R. V. (2009). Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage, 46(3), 786-802.
    DOI Scopus1619 WoS1512 Europe PMC1050
    2009 Sun, D., Stuart, G. W., Jenkinson, M., Wood, S. J., McGorry, P. D., Velakoulis, D., . . . Pantelis, C. (2009). Brain surface contraction mapped in first-episode schizophrenia: A longitudinal magnetic resonance imaging study. Molecular Psychiatry, 14(10), 976-986.
    DOI Scopus109 WoS96 Europe PMC69
    2008 Brooks, J. C. W., Beckmann, C. F., Miller, K. L., Wise, R. G., Porro, C. A., Tracey, I., & Jenkinson, M. (2008). Physiological noise modelling for spinal functional magnetic resonance imaging studies. NeuroImage, 39(2), 680-692.
    DOI Scopus162 WoS147 Europe PMC116
    2008 Harvey, A. K., Pattinson, K. T. S., Brooks, J. C. W., Mayhew, S. D., Jenkinson, M., & Wise, R. G. (2008). Brainstem functional magnetic resonance imaging: Disentangling signal from physiological noise. Journal of Magnetic Resonance Imaging, 28(6), 1337-1344.
    DOI Scopus124 WoS118 Europe PMC91
    2007 Smith, S. M., Johansen-Berg, H., Jenkinson, M., Nichols, T. E., Miller, K. L., Klein, J. C., . . . Behrens, T. E. J. (2007). Acquisition and voxelwise analysis of multi-subject diffusion data with tract-based spatial statistics. Nature Protocols, 2(3), 499-503.
    DOI Scopus478 WoS458 Europe PMC379
    2007 Bartsch, A. J., Homola, G., Biller, A., Smith, S. M., Weijers, H. G., Wiesbeck, G. A., . . . Bendszus, M. (2007). Manifestations of early brain recovery associated with abstinence from alcoholism. Brain, 130(1), 36-47.
    DOI Scopus165 WoS140 Europe PMC103
    2007 Smith, S., Jenkinson, M., Beckmann, C., Miller, K., & Woolrich, M. (2007). Meaningful design and contrast estimability in FMRI. NeuroImage, 34(1), 127-136.
    DOI Scopus46 WoS44 Europe PMC37
    2007 Smith, S. M., Rao, A., De Stefano, N., Jenkinson, M., Schott, J. M., Matthews, P. M., & Fox, N. C. (2007). Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX. NeuroImage, 36(4), 1200-1206.
    DOI Scopus95 WoS90 Europe PMC71
    2007 Douaud, G., Smith, S., Jenkinson, M., Behrens, T., Johansen-Berg, H., Vickers, J., . . . James, A. (2007). Anatomically related grey and white matter abnormalities in adolescent-onset schizophrenia. Brain, 130(9), 2375-2386.
    DOI Scopus585 WoS575 Europe PMC456
    2007 Smith, S., Johansen-Berg, H., Jenkinson, M., Rueckert, D., Nichols, T., Miller, K., . . . Behrens, T. (2007). Erratum: Acquisition and voxelwise analysis of multi-subject diffusion data with Tract-Based Spatial Statistics (Nature Protocols (2007) (499-503) 10.1038/nprot.2007.45). Nature Protocols, 2(3).
    2007 Zarei, M., Johansen-Berg, H., Jenkinson, M., Ciccarelli, O., Thompson, A. J., & Matthews, P. M. (2007). Two-dimensional population map of cortical connections in the human internal capsule. Journal of Magnetic Resonance Imaging, 25(1), 48-54.
    DOI Scopus49 WoS49 Europe PMC36
    2007 Bannister, P. R., Michael Brady, J., & Jenkinson, M. (2007). Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images. Image and Vision Computing, 25(3), 311-320.
    DOI Scopus18 WoS14
    2006 Drobnjak, I., Gavaghan, D., Süli, E., Pitt-Francis, J., & Jenkinson, M. (2006). Development of a functional magnetic resonance imaging simulator for modeling realistic rigid-body motion artifacts. Magnetic Resonance in Medicine, 56(2), 364-380.
    DOI Scopus72 WoS70 Europe PMC40
    2006 Beckmann, C. F., Jenkinson, M., Woolrich, M. W., Behrens, T. E. J., Flitney, D. E., Devlin, J. T., & Smith, S. M. (2006). Applying FSL to the FIAC data: Model-based and model-free analysis of voice and sentence repetition priming. Human Brain Mapping, 27(5), 380-391.
    DOI Scopus48 WoS49 Europe PMC42
    2006 Behrens, T. E. J., Jenkinson, M., Robson, M. D., Smith, S. M., & Johansen-Berg, H. (2006). A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex. NeuroImage, 30(1), 220-227.
    DOI Scopus50 WoS47 Europe PMC37
    2006 Smith, S. M., Jenkinson, M., Johansen-Berg, H., Rueckert, D., Nichols, T. E., Mackay, C. E., . . . Behrens, T. E. J. (2006). Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data. NeuroImage, 31(4), 1487-1505.
    DOI Scopus4792 WoS4648 Europe PMC3604
    2005 Smith, S. M., Beckmann, C. F., Ramnani, N., Woolrich, M. W., Bannister, P. R., Jenkinson, M., . . . McGonigle, D. J. (2005). Variability in fMRI: A re-examination of inter-session differences. Human Brain Mapping, 24(3), 248-257.
    DOI Scopus149 WoS138 Europe PMC101
    2005 Österbauer, R. A., Matthews, P. M., Jenkinson, M., Beckmann, C. F., Hansen, P. C., & Calvert, G. A. (2005). Color of scents: Chromatic stimuli modulate odor responses in the human brain. Journal of Neurophysiology, 93(6), 3434-3441.
    DOI Scopus119 WoS109 Europe PMC52
    2005 Bridge, H., Clare, S., Jenkinson, M., Jezzard, P., Parker, A. J., & Matthews, P. M. (2005). Independent anatomical and functional measures of the V1/V2 boundary in human visual cortex. Journal of Vision, 5(2), 93-102.
    DOI Scopus83 WoS77 Europe PMC57
    2004 Woolrich, M. W., Jenkinson, M., Brady, J. M., & Smith, S. M. (2004). Fully Bayesian Spatio-Temporal Modeling of FMRI Data. IEEE Transactions on Medical Imaging, 23(2), 213-231.
    DOI Scopus195 WoS184 Europe PMC87
    2004 Bannister, P. R., Michael Brady, J., & Jenkinson, M. (2004). TIGER - A new model for spatio-temporal realignment of FMRI data. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 3117, 292-303.
    DOI Scopus5 WoS5
    2004 Freire, L., Orchard, J., Jenkinson, M., & Mangin, J. F. (2004). Reducing Activation-Related Bias in FMRI Registration. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 3150, 278-285.
    DOI Scopus3 WoS2
    2004 Jenkinson, M., Wilson, J. L., & Jezzard, P. (2004). Perturbation method for magnetic field calculations of nonconductive objects. Magnetic Resonance in Medicine, 52(3), 471-477.
    DOI Scopus50 WoS44 Europe PMC33
    2004 Woolrich, M. W., Behrens, T. E. J., Beckmann, C. F., Jenkinson, M., & Smith, S. M. (2004). Multilevel linear modelling for FMRI group analysis using Bayesian inference. NeuroImage, 21(4), 1732-1747.
    DOI Scopus1159 WoS1149 Europe PMC914
    2003 Wilson, J. L., Jenkinson, M., & Jezzard, P. (2003). Protocol to determine the optimal intraoral passive shim for minimisation of susceptibility artifact in human inferior frontal cortex. NeuroImage, 19(4), 1802-1811.
    DOI Scopus21 WoS23 Europe PMC14
    2003 Walters, N. B., Egan, G. F., Kril, J. J., Kean, M., Waley, P., Jenkinson, M., & Watson, J. D. G. (2003). In vivo identification of human cortical areas using high-resolution MRI: An approach to cerebral structure-function correlation. Proceedings of the National Academy of Sciences of the United States of America, 100(5), 2981-2986.
    DOI Scopus127 WoS119 Europe PMC94
    2003 Freire, L., & Jenkinson, M. (2003). A gradient-informed robust motion correction method for FMRI. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2717, 377-386.
    DOI Scopus1 WoS1
    2003 Beckmann, C. F., Jenkinson, M., & Smith, S. M. (2003). General multilevel linear modeling for group analysis in FMRI. NeuroImage, 20(2), 1052-1063.
    DOI Scopus1141 WoS1126 Europe PMC894
    2003 Jenkinson, M. (2003). Fast, automated, N-dimensional phase-unwrapping algorithm. Magnetic Resonance in Medicine, 49(1), 193-197.
    DOI Scopus530 WoS514 Europe PMC386
    2003 Parry, A., Clare, S., Jenkinson, M., Smith, S., Palace, J., & Matthews, P. M. (2003). MRI brain T1 relaxation time changes in MS patients increase over time in both the white matter and the cortex. Journal of Neuroimaging, 13(3), 234-239.
    DOI Scopus38 WoS35 Europe PMC29
    2003 Behrens, T. E. J., Woolrich, M. W., Jenkinson, M., Johansen-Berg, H., Nunes, R. G., Clare, S., . . . Smith, S. M. (2003). Characterization and Propagation of Uncertainty in Diffusion-Weighted MR Imaging. Magnetic Resonance in Medicine, 50(5), 1077-1088.
    DOI Scopus2210 WoS2123 Europe PMC1607
    2002 Wilson, J. L., Jenkinson, M., & Jezzard, P. (2002). Optimization of static field homogeneity in human brain using diamagnetic passive shims. Magnetic Resonance in Medicine, 48(5), 906-914.
    DOI Scopus82 WoS77 Europe PMC66
    2002 Wilson, J. L., Jenkinson, M., De Araujo, I., Kringelbach, M. L., Rolls, E. T., & Jezzard, P. (2002). Fast, fully automated global and local magnetic field optimization for fMRI of the human brain. NeuroImage, 17(2), 967-976.
    DOI Scopus133 WoS131 Europe PMC106
    2002 Smith, S. M., Zhang, Y., Jenkinson, M., Chen, J., Matthews, P. M., Federico, A., & De Stefano, N. (2002). Accurate, robust, and automated longitudinal and cross-sectional brain change analysis. NeuroImage, 17(1), 479-489.
    DOI Scopus1591 WoS1547 Europe PMC1168
    2002 Jenkinson, M., & Brady, M. (2002). A saliency-based hierarchy for local symmetries. Image and Vision Computing, 20(2), 85-101.
    DOI Scopus5 WoS5
    2002 Parry, A., Clare, S., Jenkinson, M., Smith, S., Palace, J., & Matthews, P. M. (2002). White matter and lesion T1 relaxation times increase in parallel and correlate with disability in multiple sclerosis. Journal of Neurology, 249(9), 1279-1286.
    DOI Scopus85 WoS75 Europe PMC65
    2002 Jenkinson, M., Bannister, P., Brady, M., & Smith, S. (2002). Improved optimization for the robust and accurate linear registration and motion correction of brain images. NeuroImage, 17(2), 825-841.
    DOI Scopus7489 WoS7353 Europe PMC5609
    2001 Jenkinson, M., & Smith, S. (2001). A global optimisation method for robust affine registration of brain images. Medical Image Analysis, 5(2), 143-156.
    DOI Scopus4819 WoS4713 Europe PMC3569
    2001 Smith, S. M., De Stefano, N., Jenkinson, M., & Matthews, P. M. (2001). Normalized accurate measurement of longitudinal brain change. Journal of Computer Assisted Tomography, 25(3), 466-475.
    DOI Scopus420 WoS396 Europe PMC299
    2000 Reddy, H., Narayanan, S., Arnoutelis, R., Jenkinson, M., Antel, J., Matthews, P. M., & Arnold, D. L. (2000). Evidence for adaptive functional changes in the cerebral cortex with axonal injury from multiple sclerosis. Brain, 123(11), 2314-2320.
    DOI Scopus262 WoS243 Europe PMC165
    2000 Jenkinson, M., & Smith, S. M. (2000). Global optimisation for robust affine registration. NeuroImage, 11(5 PART II), S479.
    DOI Scopus4
    2000 Matthews, P. M., Piniero, R., Johannssen-Berg, H., Pendlebury, S., Lee, M., Reddy, H., . . . Arnold, D. L. (2000). Adaptive local reorganisation of primary motor cortex after brain injury. NeuroImage, 11(5 PART II), S149.
    DOI
    2000 Lee, M., Reddy, H., Johansen-Berg, H., Pendlebury, S., Jenkinson, M., Smith, S., . . . Matthews, P. M. (2000). The motor cortex shows adaptive functional changes to brain injury from multiple sclerosis. Annals of Neurology, 47(5), 606-613.
    DOI Scopus250 WoS225 Europe PMC156
    1997 MonWilliams, M., Wann, J. P., Jenkinson, M., & Rushton, K. (1997). Synaesthesia in the normal limb. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 264(1384), 1007-1010.
    DOI WoS69 Europe PMC32
    1994 DANBURY, R., & JENKINSON, M. (1994). SYNCHRONIZED SERVOMECHANISMS - THE SCALAR-FIELD APPROACH. IEE PROCEEDINGS-CONTROL THEORY AND APPLICATIONS, 141(4), 261-273.
    DOI WoS7
  • Books

    Year Citation
    2017 Arbel, T., Cardoso, M., Chung, A., Jenkinson, M., Ribbens, A., & Wells, W. (2017). Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers (Vol. 10081 LNCS). H. Muller, B. Kelm, T. Arbel, W. CaI, M. Cardoso, G. Langs, . . . A. Ribbens (Eds.), Springer International Publishing AG.
    2017 Arbel, T., Cardoso, M., Chung, A., Jenkinson, M., Ribbens, A., & Wells, W. (2017). Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers (Vol. 10081 LNCS). H. Muller, B. Kelm, T. Arbel, W. CaI, M. Cardoso, G. Langs, . . . A. Ribbens (Eds.), Springer International Publishing AG.
  • Book Chapters

    Year Citation
    2022 Pedersen, M., Verspoor, K., Abbott, D. F., Jenkinson, M., Sinclair, B., Law, M., & Jackson, G. D. (2022). Deep learning for reliable detection of epileptogenic lesions. In Augmenting Neurological Disorder Prediction and Rehabilitation Using Artificial Intelligence (pp. 163-175). Elsevier.
    DOI
    2022 Drobnjak, I., Graham, M., Zhang, H., & Jenkinson, M. (2022). Optimization of the MR imaging pipeline using simulation. In Biomedical Image Synthesis and Simulation: Methods and Applications (pp. 165-193). Elsevier.
    DOI
    2021 Sundaresan, V., Griffanti, L., & Jenkinson, M. (2021). Brain Tumour Segmentation Using a Triplanar Ensemble of U-Nets on MR Images. In A. Crimi, & S. Bakas (Eds.), Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries (Vol. 12658 LNCS, pp. 340-353). Switzerland: Springer International Publishing.
    DOI Scopus4
    2012 Jenkinson, M. (2012). Registration, atlases and cortical flattening. In Functional Magnetic Resonance Imaging: An Introduction to Methods (pp. 271-295). Oxford University PressOxford.
    DOI
    2001 Jenkinson, M., & Smith, S. (2001). The role of registration in functional magnetic resonance imaging. In Medical Image Registration (pp. 183-198).
    Scopus7
  • Conference Papers

    Year Citation
    2022 Dinsdale, N. K., Jenkinson, M., & Namburete, A. I. L. (2022). FedHarmony: Unlearning Scanner Bias with Distributed Data. In L. Wang, Q. Dou, P. T. Fletcher, S. Speidel, & S. Li (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 13438 LNCS (pp. 695-704). Singapore, SINGAPORE: SPRINGER INTERNATIONAL PUBLISHING AG.
    DOI
    2022 Sundaresan, V., Dinsdale, N. K., Jenkinson, M., & Griffanti, L. (2022). Omni-Supervised Domain Adversarial Training for White Matter Hyperintensity Segmentation in the UK Biobank. In Proceedings - International Symposium on Biomedical Imaging Vol. 2022-March (pp. 4 pages). Kolkata, INDIA: IEEE.
    DOI
    2021 Wyburd, M. K., Hesse, L. S., Aliasi, M., Jenkinson, M., Papageorghiou, A. T., Haak, M. C., & Namburete, A. I. L. (2021). Assessment of Regional Cortical Development Through Fissure Based Gestational Age Estimation in 3D Fetal Ultrasound. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 12959 LNCS (pp. 242-252). Switzerland: Springer International Publishing.
    DOI Scopus2
    2021 To, M. S., Sarno, I. G., Chong, C., Jenkinson, M., & Carneiro, G. (2021). Self-supervised lesion change detection and localisation in longitudinal multiple sclerosis brain imaging. In Proceedings of the 24th International Conference on Medical Image Computing and Computer - Assisted Intervention as published in Image Processing, Computer Vision, Pattern Recognition, and Graphics Vol. 12907 LNCS (pp. 670-680). online: Springer International Publishing.
    DOI
    2021 Wyburd, M. K., Dinsdale, N. K., Namburete, A. I. L., & Jenkinson, M. (2021). TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 12901 LNCS (pp. 250-260). Switzerland: Springer International Publishing.
    DOI Scopus1 WoS2
    2021 Corral Acero, J., Sundaresan, V., Dinsdale, N., Grau, V., & Jenkinson, M. (2021). A 2-step deep learning method with domain adaptation for Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Magnetic Resonance Segmentation. In Proceedings of the 11th International Workshop on Statistical Atlases and Computational Models of the Heart (STACOM 2020), as published in Lecture Notes in Computer Science Vol. 12592 (pp. 196-207). Cham, Switzerland: Springer International Publishing.
    DOI Scopus4
    2021 Gentile, G., Jenkinson, M., Griffanti, L., Lucchetti, L., Leoncini, M., Inderyas, M., . . . Battaglini, M. (2021). BIANCA-MS: A novel artificial intelligence tool for multiple sclerosis automated lesions segmentation. In JOURNAL OF THE NEUROLOGICAL SCIENCES Vol. 429 (pp. 2 pages). Rome, ITALY: ELSEVIER.
    DOI
    2021 Jurynczyk, M., Klimiec-Moskal, E., Kong, Y., Hurley, S., Messina, S., Yeo, T., . . . Palace, J. (2021). Clinical, radiological and quantitative imaging analysis reveals distinct subgroups in the antibody-negative neuromyelitis optica/multiple sclerosis overlap cohort. In MULTIPLE SCLEROSIS JOURNAL Vol. 27 (pp. 443). SAGE PUBLICATIONS LTD.
    2021 Fiondella, L., Mattioli, I., Vinceti, G., Chiari, A., Tondelli, M., Arya, Z., . . . Zamboni, G. (2021). THE BRAIN CORRELATES OF BEHAVIORAL DISTURBANCES IN FRONTOTEMPORAL DEMENTIA. In EUROPEAN JOURNAL OF NEUROLOGY Vol. 28 (pp. 92). WILEY.
    2020 Dinsdale, N. K., Jenkinson, M., & Namburete, A. I. L. (2020). Unlearning Scanner Bias for MRI Harmonisation. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 12262 LNCS (pp. 369-378). Switzerland: Springer Nature.
    DOI Scopus7
    2020 Dinsdale, N. K., Jenkinson, M., & Namburete, A. I. L. (2020). Unlearning Scanner Bias for MRI Harmonisation in Medical Image Segmentation. In Communications in Computer and Information Science Vol. 1248 CCIS (pp. 15-25). Switzerland: Springer Nature.
    DOI Scopus1
    2020 Wyburd, M. K., Jenkinson, M., & Namburete, A. I. L. (2020). Cortical Plate Segmentation Using CNNs in 3D Fetal Ultrasound. In Communications in Computer and Information Science Vol. 1248 CCIS (pp. 56-68). Switzerland: Springer Nature.
    DOI Scopus6 WoS4
    2019 Dinsdale, N. K., Jenkinson, M., & Namburete, A. I. L. (2019). Spatial Warping Network for 3D Segmentation of the Hippocampus in MR Images. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 11766 LNCS (pp. 284-291). Switzerland: Springer.
    DOI Scopus11 WoS8
    2018 Saillant, A., Platsch, G., Shah, V., Zuehlsdorff, S., Jenkinson, M., & Chappell, M. (2018). Reliability of myocardial blood flow estimates in abnormal scans. In JOURNAL OF NUCLEAR MEDICINE Vol. 59 (pp. 2 pages). Philadelphia, PA: SOC NUCLEAR MEDICINE INC.
    2018 Williamson, W., Lewandowski, A. J., Huckstep, O., Visse, E., Betts, J., Jenkinson, M., . . . Leeson, P. (2018). Thalamic Volume is a Predictor of Cardiac Function at Rest and During Exercise in Young Adults. In CIRCULATION Vol. 138 (pp. 2 pages). LIPPINCOTT WILLIAMS & WILKINS.
    2017 Saillant, A., Saint, K., Memmott, M., Armstrong, I., Shah, V., Zuehlsdorff, S., . . . Chappell, M. (2017). Estimation and reliability of myocardial blood flow after motion correction with dynamic PET using a Bayesian framework. In EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING Vol. 44 (pp. S356). SPRINGER.
    WoS1
    2016 Battaglini, M., Jenkinson, M., & De Stefano, N. (2016). SIENA-XL for the assessment of gray matter and white matter volume changes in clinical studies of patients with multiple sclerosis.. In MULTIPLE SCLEROSIS JOURNAL Vol. 22 (pp. 841). London, ENGLAND: SAGE PUBLICATIONS LTD.
    2016 Bozek, J., Fitzgibbon, S., Wright, R., Rueckert, D., Jenkinson, M., & Robinson, E. C. (2016). Construction of a neonatal cortical surface atlas using multimodal surface matching. In Proceedings - International Symposium on Biomedical Imaging Vol. 2016-June (pp. 775-778). online: IEEE.
    DOI Scopus7 WoS4
    2016 Arya, Z., Griffanti, L., Mackay, C. E., & Jenkinson, M. (2016). Iterative dual LDA: A novel classification algorithm for resting state fMRI. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 10019 LNCS (pp. 279-286). Netherlands: Springer.
    DOI Scopus1 WoS1
    2015 Battaglini, M., Jenkinson, M., & De Stefano, N. (2015). Improving measurement errors in the assessment of GM and WM volume changes using a new sienax procedure. In MULTIPLE SCLEROSIS JOURNAL Vol. 21 (pp. 495). Barcelona, SPAIN: SAGE PUBLICATIONS LTD.
    2015 Zamboni, G., Griffanti, L., Bonifacio, G., Mazzucco, S., Khan, A., Pendlebury, S., . . . Rothwell, P. (2015). Association between macroscopic and microstructural white matter damage and cognition in vascular cognitive impairment. In INTERNATIONAL JOURNAL OF STROKE Vol. 10 (pp. 381). WILEY-BLACKWELL.
    2015 Griffanti, L., Zamboni, G., Khan, A., Bonifacio, G., Li, L., Mazzucco, S., . . . Jenkinson, M. (2015). Validation of automated segmentation of white matter hyperintensities on MRI: Correlation with cognitive function after TIA and stroke. In INTERNATIONAL JOURNAL OF STROKE Vol. 10 (pp. 62). WILEY-BLACKWELL.
    2014 Matthews, L., Kolind, S., Brazier, A., Leite, M. I., Brooks, J., Jenkinson, M., . . . Palace, J. (2014). Inflammation does not cause chronic global neurodegeneration in NMO? A longitudinal multimodel quantitative MRI study comparing NMO and MS. In MULTIPLE SCLEROSIS JOURNAL Vol. 20 (pp. 282). Boston, MA: SAGE PUBLICATIONS LTD.
    2013 Battaglini, M., Jenkinson, M., Giorgio, A., Rocca, M. A., Filippi, M., Palace, J., & De Stefano, N. (2013). Improved MRI-derived assessment of grey and white matter volumes by using SIENAX. In MULTIPLE SCLEROSIS JOURNAL Vol. 19 (pp. 424-425). Copenhagen, DENMARK: SAGE PUBLICATIONS LTD.
    2013 Arun, T., Tomassini, V., Sbardella, E., de Ruiter, M., Matthews, L., Leite, M., . . . Palace, J. (2013). ASIC1 Blockade in Primary Progressive Multiple Sclerosis: Evidence of Neuroprotection with Amiloride. In NEUROLOGY Vol. 80 (pp. 1 page). San Diego, CA: LIPPINCOTT WILLIAMS & WILKINS.
    WoS1
    2013 Heinrich, M. P., Jenkinson, M., Papiez, B. W., Glesson, F. V., Brady, S. M., & Schnabel, J. A. (2013). Edge- and detail-preserving sparse image representations for deformable registration of chest MRI and CT volumes. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 7917 LNCS (pp. 463-474). Germany: Springer Berlin Heidelberg.
    DOI Scopus16 Europe PMC3
    2013 Heinrich, M. P., Jenkinson, M., Papiez, B. W., Brady, S. M., & Schnabel, J. A. (2013). Towards realtime multimodal fusion for image-guided interventions using self-similarities. In K. Mori, I. Sakuma, Y. Sato, C. Barillot, & N. Navab (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 8149 LNCS (pp. 187-194). Nagoya Univ, Nagoya, JAPAN: SPRINGER-VERLAG BERLIN.
    DOI Scopus112 WoS92 Europe PMC10
    2013 Bhushan, M., Schnabel, J. A., Chappell, M., Gleeson, F., Anderson, M., Franklin, J., . . . Jenkinson, M. (2013). The impact of heterogeneity and uncertainty on prediction of response to therapy using dynamic MRI data.. In K. Mori, I. Sakuma, Y. Sato, C. Barillot, & N. Navab (Eds.), Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention Vol. 16 (pp. 316-323). Nagoya Univ, Nagoya, JAPAN: SPRINGER-VERLAG BERLIN.
    DOI Scopus3 WoS2
    2012 Heinrich, M. P., Jenkinson, M., Brady, S. M., & Schnabel, J. A. (2012). Globally optimal deformable registration on a minimum spanning tree using dense displacement sampling. In N. Ayache, H. Delingette, P. Golland, & K. Mori (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 7512 LNCS (pp. 115-122). Nice, FRANCE: SPRINGER-VERLAG BERLIN.
    DOI Scopus36 WoS27 Europe PMC1
    2012 Heinrich, M. P., Jenkinson, M., Brady, S. M., & Schnabel, J. A. (2012). Textural mutual information based on cluster trees for multimodal deformable registration. In Proceedings - International Symposium on Biomedical Imaging (pp. 1471-1474). Barcelona, SPAIN: IEEE.
    DOI Scopus8 WoS5
    2012 Gunn, R. N., Jenkinson, M., Rabinner, E. A., Behrens, T., Shotbolt, P., Long, C., . . . Tziortzi, A. C. (2012). Quantification of dopamine release within the connectivity-derived functional subdivision of striatum. In JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM Vol. 32 (pp. S166). Baltimore, MD: NATURE PUBLISHING GROUP.
    WoS1
    2012 Matthews, L. A. E., Marasco, R., Jenkinson, M., Kuker, W., Leite, M. I., Giorgio, A., . . . Palace, J. (2012). Neuromyelitis optica spectrum disorder and multiple sclerosis can be distinguished on the basis of MRI brain lesion characteristics. In MULTIPLE SCLEROSIS JOURNAL Vol. 18 (pp. 9-10). Lyon, FRANCE: SAGE PUBLICATIONS LTD.
    2012 Fabes, J., Matthews, L., Fillipini, N., Talbot, K., Jenkinson, M., & Turner, M. R. (2012). Quantitative Analysis of FLAIR Images in ALS Has Diagnostic Potential. In ANNALS OF NEUROLOGY Vol. 72 (pp. S79). Boston, MA: WILEY-BLACKWELL.
    2012 Kolasinski, J., Stagg, C. J., Chance, S., Esiri, M., Chang, E., Palace, J. A., . . . Johansen-Berg, H. (2012). COMPARISON OF HISTOLOGICAL AND DIFFUSION-WEIGHTED MRI TECHNIQUES IN THE ANALYSIS OF POST MORTEM MULTIPLE SCLEROSIS BRAINS. In JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY Vol. 83 (pp. 1 page). Newcastle, ENGLAND: BMJ PUBLISHING GROUP.
    DOI
    2012 Arun, T., Sbdarella, E., Ruiter, M., Tomassini, V., Leite, M. I., Craner, M., . . . Palace, J. (2012). AMILORIDE TREATMENT AMELIORATES MRI SURROGATE MARKERS OF NEURODEGENERATION IN PRIMARY PROGRESSIVE MULTIPLE SCLEROSIS. In JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY Vol. 83 (pp. 1 page). Gateshead, ENGLAND: B M J PUBLISHING GROUP.
    DOI
    2011 Matthews, L., Kolind, S., Jenkinson, M., Leite, M., Johansen-Berg, H., & Palace, J. (2011). Distinction of aquaporin-4 antibody positive neuromyelitis optica from multiple sclerosis using diffusion tensor and myelin water imaging. In MULTIPLE SCLEROSIS JOURNAL Vol. 17 (pp. S165). SAGE PUBLICATIONS LTD.
    2011 Tziortzi, A., Searle, G., Long, C., Shotbolt, P., Rabiner, E., Jenkinson, M., & Gunn, R. (2011). A diffusion tensor imaging (DTI) and [11C]PHNO PET study to measure dopamine release in the functional subdivisions of the basal ganglia. In JOURNAL OF NUCLEAR MEDICINE Vol. 52 (pp. 2 pages). SOC NUCLEAR MEDICINE INC.
    2011 de Ruiter, M. B., Tomassini, V., Arun, T., Jbabdi, S., Matthews, L. A., Sbardella, E., . . . Palace, J. (2011). Acid-sensing ion channel 1 blockade preserves brain microstructural integrity in patients with multiple sclerosis. In MULTIPLE SCLEROSIS JOURNAL Vol. 17 (pp. S205). SAGE PUBLICATIONS LTD.
    2011 Bhushan, M., Schnabel, J. A., Risser, L., Heinrich, M. P., Brady, J. M., & Jenkinson, M. (2011). Motion correction and parameter estimation in dceMRI sequences: Application to colorectal cancer. In G. Fichtinger, A. Martel, & T. Peters (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 6891 LNCS (pp. 476-483). Toronto, CANADA: SPRINGER-VERLAG BERLIN.
    DOI Scopus37 WoS33 Europe PMC5
    2011 Tziortzi, A., Searle, G., Tsoumpas, C., Long, C., Shotbolt, P., Rabiner, E., . . . Gunn, R. N. (2011). MR-DTI and PET multimodal imaging of dopamine release within subdivisions of basal ganglia. In Journal of Physics: Conference Series Vol. 317 (pp. 3 pages). CYPRUS: IOP PUBLISHING LTD.
    DOI Scopus2 WoS1
    2011 Heinrich, M. P., Jenkinson, M., Bhushan, M., Matin, T., Gleeson, F. V., Brady, J. M., & Schnabel, J. A. (2011). Non-local shape descriptor: A new similarity metric for deformable multi-modal registration. In G. Fichtinger, A. Martel, & T. Peters (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 6892 LNCS (pp. 541-548). Toronto, CANADA: SPRINGER-VERLAG BERLIN.
    DOI Scopus20 WoS18 Europe PMC2
    2010 Bishopy, C., Jenkinson, M., Declerck, J., & Merhof, D. (2010). Evaluation of hippocampal segmentation methods for healthy and pathological subjects. In EG VCBM 2010 - Eurographics Workshop on Visual Computing for Biology and Medicine (pp. 17-24).
    DOI Scopus3
    2010 Tarunya, A., Smith, S., Jenkinson, M., Palace, J. A., & Beckmann, C. (2010). PREDICTING BRAIN ATROPHY AT 1 YEAR BY BASELINE MULTIMODAL MRI DATA. In JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY Vol. 81 (pp. E42). Bournemouth, ENGLAND: B M J PUBLISHING GROUP.
    DOI
    2010 Tziortzi, A. C., Douaud, G., Shotbolt, P., Bishop, C., Searle, G., Laruelle, M., . . . Gunn, R. N. (2010). A combined diffusion tensor imaging (DTI) and [11C]-(+)-PHNO positron emission tomography (PET) study to quantify dopamine D3/D2 receptors in pallidum. In NEUROIMAGE Vol. 52 (pp. S23). Glasgow, SCOTLAND: ACADEMIC PRESS INC ELSEVIER SCIENCE.
    DOI WoS6
    2010 Arun, T., Smith, S., Weir, A. P., Palace, J., & Jenkinson, M. (2010). DIRECT COMPARISON OF MULTIPLE NONLESIONAL IMAGING MEASURES TO ASSESS THEIR POWER TO MEASURE TREATMENT EFFECTS OVER 1 YEAR IN PRIMARY PROGRESSIVE MULTIPLE SCLEROSIS. In JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY Vol. 81 (pp. E52-E53). Bournemouth, ENGLAND: B M J PUBLISHING GROUP.
    DOI
    2009 Poynton, C., Jenkinson, M., & Wells, W. (2009). Atlas-based improved prediction of magnetic field inhomogeneity for distortion correction of EPI data. In G. Z. Yang, D. Hawkes, D. Rueckert, A. Nobel, & C. Taylor (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 5762 LNCS (pp. 951-959). Imperial Coll, London, ENGLAND: SPRINGER-VERLAG BERLIN.
    DOI Scopus6 WoS6 Europe PMC3
    2009 Petrović, A., Smith, S. M., Menke, R. A., & Jenkinson, M. (2009). Methods for tractography-driven surface registration of brain structures.. In G. Z. Yang, D. Hawkes, D. Rueckert, A. Nobel, & C. Taylor (Eds.), Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention Vol. 12 (pp. 705-712). Imperial Coll, London, ENGLAND: SPRINGER-VERLAG BERLIN.
    DOI Scopus7 WoS6 Europe PMC1
    2008 Babalola, K. O., Patenaude, B., Aljabar, P., Schnabel, J., Kennedy, D., Crum, W., . . . Rueckert, D. (2008). Comparison and evaluation of segmentation techniques for subcortical structures in brain MRI. In D. Metaxas, L. Axel, G. Fichtinger, & G. Szekely (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 5241 LNCS (pp. 409-416). New York, NY: SPRINGER-VERLAG BERLIN.
    DOI Scopus64 WoS52 Europe PMC8
    2008 Poynton, C., Jenkinson, M., Whalen, S., Golby, A. J., & Wells, W. (2008). Fieldmap-free retrospective registration and distortion correction for EPI-based functional imaging. In D. Metaxas, L. Axel, G. Fichtinger, & G. Szekely (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 5242 LNCS (pp. 271-279). New York, NY: SPRINGER-VERLAG BERLIN.
    DOI Scopus6 WoS3
    2008 Glahn, D. C., Jenkinson, M., Monkul, E. S., Robinson, J. L., Bearden, C. E., Escamilla, M. A., . . . Patenaude, B. (2008). Amygdala enlargement and shape distortion in bipolar disorder. In BIOLOGICAL PSYCHIATRY Vol. 63 (pp. 232S-233S). Washington, DC: ELSEVIER SCIENCE INC.
    WoS1
    2007 Zöllei, L., Jenkinson, M., Timoner, S., & Wells, W. (2007). A marginalized MAP approach and EM optimization for pair-wise registration. In N. Karssemeijer, & B. Lelieveldt (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 4584 LNCS (pp. 662-674). Kerkrade, NETHERLANDS: SPRINGER-VERLAG BERLIN.
    DOI Scopus13 WoS5 Europe PMC2
    2006 Patenaude, B., Smith, S., & Jenkinson, M. (2006). A Bayesian cost function applied to model-based registration of sub-cortical brain structures. In J. P. W. Pluim, B. Likar, & F. A. Gerritsen (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 4057 LNCS (pp. 9-17). Utrecht Univ, Utrecht, NETHERLANDS: SPRINGER-VERLAG BERLIN.
    DOI
    2006 Babalola, K. O., Cootes, T. F., Patenaude, B., Rao, A., & Jenkinson, M. (2006). Comparing the similarity of statistical shape models using the bhattacharya metric. In R. Larsen, M. Nielsen, & J. Sporring (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 4190 LNCS - I (pp. 142-150). Copenhagen, DENMARK: SPRINGER-VERLAG BERLIN.
    DOI Scopus7 WoS6
    2005 Crum, W. R., Camara, O., Rueckert, D., Bhatia, K. K., Jenkinson, M., & Hill, D. L. G. (2005). Generalised overlap measures for assessment of pairwise and groupwise image registration and segmentation. In J. S. Duncan, & G. Gerig (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 3749 LNCS (pp. 99-106). Palm Springs, CA: SPRINGER-VERLAG BERLIN.
    DOI Scopus29 WoS24 Europe PMC7
    2004 Crum, W. R., Rueckert, D., Jenkinson, M., Kennedy, D., & Smith, S. M. (2004). A framework for detailed objective comparison of non-rigid registration algorithms in neuroimaging. In C. Barillot, D. R. Haynor, & P. Hellier (Eds.), Lecture Notes in Computer Science Vol. 3216 (pp. 679-686). St Malo, FRANCE: SPRINGER-VERLAG BERLIN.
    DOI Scopus50 WoS38
    2004 Bannister, P. R., Brady, J. M., & Jenkinson, M. (2004). Non-rigid motion estimation and spatiooral realignment in FMRI. In IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops Vol. 2004-January. IEEE.
    DOI
    2004 Loftus, C., Jenkinson, M., & Egan, G. F. (2004). High resolution boundary element forward models for sensor arrays: An application to electroencephalography. In M. Palaniswami, B. Krishnamachari, & S. Challa (Eds.), Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04 (pp. 599-604). Melbourne, AUSTRALIA: IEEE.
    2004 Smith, S. M., Jenkinson, M., Woolrich, M. W., Beckmann, C. F., Behrens, T. E. J., Johansen-Berg, H., . . . Matthews, P. M. (2004). Advances in functional and structural MR image analysis and implementation as FSL. In NeuroImage Vol. 23 (pp. S208-S219). Univ Calif Los Angeles, Inst Pure & Appl Math, Los Angeles, CA: ACADEMIC PRESS INC ELSEVIER SCIENCE.
    DOI Scopus9163 WoS8761 Europe PMC6343
    2003 Jenkinson, M., Wilson, J., & Jezzard, P. (2003). Modelling B0 induced artifacts in fMRI using perturbation calculations. In AUSTRALIAN JOURNAL OF PSYCHOLOGY Vol. 55 (pp. 21). AUSTRALIAN PSYCHOLOGICAL SOC.
    WoS1
    2003 Loftus, C. M., Jenkinson, M., Wright, M., Sergejew, A. A., & Egan, G. F. (2003). Recovering simulated EEG source time series using independent component analysis. In AUSTRALIAN JOURNAL OF PSYCHOLOGY Vol. 55 (pp. 23). AUSTRALIAN PSYCHOLOGICAL SOC.
    2002 Walters, N., Jenkinson, M., Kean, M., Watson, J. D., & Egan, G. F. (2002). Development of in vivo high resolution individual based neuroanatomical atlases using magnetic resonance imaging. In L. Wang, J. C. Rajapakse, K. Fukushima, S. Y. Lee, & X. Yao (Eds.), ICONIP 2002 - Proceedings of the 9th International Conference on Neural Information Processing: Computational Intelligence for the E-Age Vol. 1 (pp. 193-196). SINGAPORE, SINGAPORE: NANYANG TECHNOLOGICAL UNIV.
    DOI Scopus1 WoS1
    2001 Smith, S., Zhang, Y. Y., Jenkinson, M., Matthews, P. M., & De Stefano, N. (2001). SIENA: Single and multiple time point brain atrophy analysis. In NEUROIMAGE Vol. 13 (pp. S250). ACADEMIC PRESS INC.
    WoS1
    2001 Jenkinson, M. (2001). Improved unwarping of EPI images using regularised B0 maps. In NEUROIMAGE Vol. 13 (pp. S165). ACADEMIC PRESS INC.
    WoS20
    2001 Hall, D., Goncalves, M., Smith, S., Jezzard, P., Jenkinson, M., & Haggard, M. (2001). Venous contribution to high magnitude BOLD contrast activation. In NEUROIMAGE Vol. 13 (pp. S143). ACADEMIC PRESS INC.
    2001 Bannister, P. R., & Jenkinson, M. (2001). Robust affine motion correction in fMRI time series. In NEUROIMAGE Vol. 13 (pp. S70). ACADEMIC PRESS INC.
    WoS6
    2001 Bannister, P. R., Beckmann, C., & Jenkinson, M. (2001). Exploratory motion analysis in fMRI using ICA. In NEUROIMAGE Vol. 13 (pp. S69). ACADEMIC PRESS INC.
    WoS3
    2001 Smith, S., Bannister, P. R., Beckmann, C., Brady, M., Clare, S., Flitney, D., . . . Zhang, Y. Y. (2001). FSL: New tools for functional and structural brain image analysis. In NEUROIMAGE Vol. 13 (pp. S249). ACADEMIC PRESS INC.
    WoS37
    1999 Smith, S., & Jenkinson, M. (1999). Accurate robust symmetry estimation. In C. Taylor, & A. Colchester (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 1679 (pp. 308-317). CAMBRIDGE, ENGLAND: SPRINGER-VERLAG BERLIN.
    DOI Scopus25 WoS18
    1997 Jenkinson, M., & Brady, M. (1997). Feature saliency from noise variations in invariants. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 1352 (pp. 41-48). Springer Berlin Heidelberg.
    DOI
  • Conference Items

    Year Citation
    2020 Milton, A. G., Kremer, K. L., Rao, S. R., Mas, E., Snel, M. F., Trim, P. J., . . . Hamilton-Bruce, M. A. (2020). A Prospective Cohort Study to Develop and Validate a Multivariable Prediction Model for Transient Ischaemic Attack (TIA) Diagnosis Using Proteomic Discovery and Candidate Lipid Mass Spectrometry, Neuroimaging and Machine Learning: Study Protocol. Poster session presented at the meeting of Abstracts of the Annual Conference of the Asia Pacific Stroke Organization (APSO 2020), as published in Cerebrovascular Diseases. Korea: Karger.
    DOI
    2019 Gentile, G., Battaglini, M., Luchetti, L., Giorgio, A., Griffanti, L., Sundaresan, V., . . . De Stefano, N. (2019). BIANCA for an automatic detection of multiple sclerosis lesions using machine learning. Poster session presented at the meeting of MULTIPLE SCLEROSIS JOURNAL. Stockholm, SWEDEN: SAGE PUBLICATIONS LTD.
    2019 Messina, S., Mariano, R., Roca-Fernandez, A., Cavey, A., Everett, R., Reeve, S., . . . Palace, J. (2019). Normal appearing white matter and lesional integrity in MOG-Ab disease and MS: a diffusion-weighted imaging study. Poster session presented at the meeting of MULTIPLE SCLEROSIS JOURNAL. Stockholm, SWEDEN: SAGE PUBLICATIONS LTD.
  • 2019        Wellcome Trust Collaborative Award (co-investigator) - Integrative imaging of brain structure and function in populations and individuals (total funds £3.8m)
  • 2017        Wellcome Trust Centre for Integrative Neuroimaging (co-investigator) - Wellcome Trust Centre Grant (total funds £11m)
  • 2013        Cancer Research UK - Oxford Cancer Imaging Centre (applicants in the Image Analysis Programme: Mike Brady, Michael Chappell, Vicente Grau, Mark Jenkinson, Peter Jezzard, and Julia Schnabel) (total funds of £16m across 6 Programmes)
  • 2012        Wellcome Trust Strategic Award (co-investigator) - Integrated multimodal brain imaging for neuroscience research and clinical practice (total funds £2m)
  • 2011        NERC Grant (co-investigator) - Constraining the response of the hydrological cycle, land surface and regional weather to global change (HYDRA) (total funds £121K)
  • 2010        NIH Grant (co-investigator) - Mapping the Human Connectome: Structure, Function and Heritability (total funds US$30m)
  • 2009        EPSRC Grant (co-applicant) - New Tools for Understanding White Matter Disease using Diffusion MRI (total funds £555K)
  • 2006        GlaxoSmithKline Grant (co-applicant) - Integrated structural and diffusion imaging for Alzheimer's (total funds £121K)
  • 2005        David Phillips Fellowship (principal investigator) from the UK BBSRC (total funds £395K)
  • 2005        DTI Grant (co-applicant) - Functional brain imaging: Relating patient data to the population (total funds £150K)
  • 2004        EPSRC Grant (co-applicant) - Integrated Brain Image Modelling (total funds £750K)
  • 2003        EPSRC Grant (co-author) - Information eXtraction from Images (total funds £555K)
  • 2002        GlaxoSmithKline Grant (co-author) - FMRI Group Statistics (total funds £190K)
  • International: FSL Courses
  • University of Oxford: MRI Graduate Programme
  • Current Higher Degree by Research Supervision (University of Adelaide)

    Date Role Research Topic Program Degree Type Student Load Student Name
    2022 Principal Supervisor Using AI to predict clinical outcomes in dementia Doctor of Philosophy Doctorate Full Time Luke Thomas Whitbread
    2021 Principal Supervisor Anatomically-based Deep Learning Models for Improved Neuroimaging Analysis Doctor of Philosophy under a Jointly-awarded Degree Agreement with Doctorate Full Time Miss Georgia Kenyon
    2021 Co-Supervisor The Role of the Substantia Nigra in predicting longitudinal non-motor changes in Parkinson's Disease Doctor of Philosophy Doctorate Full Time Mr Benjamin Paul Ellul
    2020 Co-Supervisor Adapting deep learning for real-world image datasets Doctor of Philosophy Doctorate Full Time Mr Fengbei Liu
    2020 Co-Supervisor Prognostic prediction of large-vessel stroke using machine learning methods Doctor of Philosophy Doctorate Full Time Miss Minyan Zeng
  • Committee Memberships

    Date Role Committee Institution Country
    2015 - ongoing Member INCF Human Atlas Working Group INCF United States
    2005 - 2008 Member ISMRM Scientific Annual Meeting Program Committee ISMRM United States
    2004 - 2007 Member NIH Data Format Working Group (NIfTI) NIH United States
  • Position: Professor of Neuro-Imaging
  • Email: mark.jenkinson@adelaide.edu.au
  • Campus: North Terrace
  • Building: Australian Institute for Machine Learning, floor 1
  • Org Unit: School of Computer Science

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