Manijeh Mohammadi Dehcheshmeh
School of Animal and Veterinary Science
Faculty of Sciences, Engineering and Technology
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Appointments
Date Position Institution name 2016 - ongoing University Postdoctoral Fellow Level A (Step 8) University of Adelaide, Adelaide 2014 - 2014 Casual Data Analyst University of South Australia -
Education
Date Institution name Country Title 2008 - 2014 University of Adelaide, Adelaide Australia PhD
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Journals
Year Citation 2025 Lee Chang, K. J., Gorron Gomez, E., Ebrahimie, E., Dehcheshmeh, M. M., Frampton, D. M. F., & Zhou, X. -R. (2025). Transcriptomic Signature of Lipid Production in Australian Aurantiochytrium sp. TC20.. Mar Biotechnol (NY), 27(1), 43.
2025 Grant, L., Mohammadi Dehcheshmeh, M., Ebrahimie, E., Khabiri, A., Veltman, T., Shipstone, M., & Trott, D. J. (2025). The effect of daily oral probiotic and postbiotic supplementation on the canine skin microbiota: Insights from culture-dependent and long-read 16S rRNA gene sequencing methods.. Veterinary dermatology, 11 pages.
Scopus22025 Lawless, C., Kovacs, K., Mohammadi Dehcheshmeh, M., Ebrahimie, E., Messele, Y. E., Snowball, M., . . . McLelland, D. J. (2025). Higher Dietary Fibre Increases the Faecal Microbiome Diversity of Golden Lion Tamarins (Leontopithecus rosalia). Animals, 15(13), 1831.
2025 Pettett, L., Ebrahimie, E., Chinkangsadarn, T., Mohammadi Dehcheshmeh, M., Trott, D. J., & Bird, P. S. (2025). The Oral Microbiome in Queensland Free-Ranging Koalas (Phascolarctos cinereus) and Its Association with Age and Periodontal Disease. Animals, 15(13), 1834.
2024 Vassileff, N., Spiers, J. G., Lee, J. D., Woodruff, T. M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., . . . Cheng, L. (2024). A Panel of miRNA Biomarkers Common to Serum and Brain-Derived Extracellular Vesicles Identified in Mouse Model of Amyotrophic Lateral Sclerosis. Molecular Neurobiology, 61(8), 5901-5915.
Scopus5 Europe PMC42024 Zhao, K., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Lewsey, M. G., Zheng, L., & Hoogenraad, N. J. (2024). Transcriptomic signature of cancer cachexia by integration of machine learning, literature mining and meta-analysis.. Computers in biology and medicine, 172, 108233.
Scopus2 Europe PMC22024 Pashaei-Asl, R., Motaali, S., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Ebrahimi, M., & Pashaiasl, M. (2024). Delivery of doxorubicin by Fe<sub>3</sub>O<sub>4</sub> nanoparticles, reduces multidrug resistance gene expression in ovarian cancer cells.. Pathology, research and practice, 263, 155667.
Scopus1 Europe PMC12023 Homer, B., Judd, J., Mohammadi Dehcheshmeh, M., Ebrahimie, E., & Trott, D. J. (2023). Gut Microbiota and Behavioural Issues in Production, Performance, and Companion Animals: A Systematic Review. Animals, 13(9), 1458.
Scopus12 Europe PMC112023 Hazi, A., Ebrahimie, E., Levay, E. A., Mohammadi-Dehcheshmeh, M., Zelko, M., Govic, A., & Nasser, H. (2023). Crosstalk between short- and long-term calorie restriction transcriptomic signatures with anxiety-like behavior, aging, and neurodegeneration: implications for drug repurposing.. Front Behav Neurosci, 17, 1257881.
Scopus12022 Xie, S., Trott, D. J., Saputra, S., Ebrahimie, E., Mohammadi Dehcheshmeh, M., Page, C., . . . Govendir, M. (2022). Pharmacokinetic profile and effect on the faecal microbiome of a single dose of pradofloxacin oral suspension in the rabbit (Oryctolagus cuniculus). Journal of Veterinary Pharmacology and Therapeutics, 45(2), 203-212.
Scopus3 Europe PMC22022 Alanazi, I. O., Alamery, S. F., Ebrahimie, E., & Mohammadi-Dehcheshmeh, M. (2022). Splice-disrupt genomic variants in prostate cancer. Molecular Biology Reports, 49(6), 4237-4246.
Scopus5 WoS1 Europe PMC32022 Nezamivand-Chegini, M., Metzger, S., Moghadam, A., Tahmasebi, A., Koprivova, A., Eshghi, S., . . . Ebrahimie, E. (2022). Nitrogen and phosphorus deficiencies alter primary and secondary metabolites of soybean roots.
2022 Govic, A., Nasser, H., Levay, E. A., Zelko, M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., . . . Hazi, A. (2022). Long-Term Calorie Restriction Alters Anxiety-like Behaviour and the Brain and Adrenal Gland Transcriptomes of the Ageing Male Rat. Nutrients, 14(21), 1-18.
Scopus15 WoS4 Europe PMC122021 Mohammadi-Dehcheshmeh, M., Moghbeli, S. M., Rahimirad, S., Alanazi, I. O., Shehri, Z. S. A., & Ebrahimie, E. (2021). A Transcription Regulatory Sequence in the 5' Untranslated Region of SARS-CoV-2 Is Vital for Virus Replication with an Altered Evolutionary Pattern against Human Inhibitory MicroRNAs.. Cells, 10(2), 319.
Scopus24 WoS14 Europe PMC282021 Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Laven, R., & Petrovski, K. (2021). Rule Discovery in Milk Content towards Mastitis Diagnosis: Dealing with Farm Heterogeneity over Multiple Years through Classification Based on Associations. Animals, 11(6), 1-13.
Scopus12 WoS6 Europe PMC72021 Yip, S., Mohammadi Dehcheshmeh, M., McLelland, D. J., Boardman, W. S. J., Saputra, S., Ebrahimie, E., . . . Trott, D. J. (2021). Porphyromonas spp., Fusobacterium spp., and Bacteroides spp. dominate microbiota in the course of macropod progressive periodontal disease. Scientific reports, 11(1), 17775-1-17775-10.
Scopus19 WoS5 Europe PMC102021 Ebrahimie, E., Zamansani, F., Alanazi, I. O., Sabi, E. M., Khazandi, M., Ebrahimi, F., . . . Ebrahimi, M. (2021). Advances in understanding the specificity function of transporters by machine learning. Computers in Biology and Medicine, 138, 1-8.
Scopus10 WoS3 Europe PMC42021 Esmaeili, F., Lohrasebi, T., Mohammadi-Dehcheshmeh, M., & Ebrahimie, E. (2021). Evaluation of the effectiveness of herbal components based on their regulatory signature on carcinogenic cancer cells. Cells, 10(11), 3139.
Scopus6 WoS2 Europe PMC42021 Ebrahimie, E., Rahimirad, S., Tahsili, M., & Mohammadi Dehcheshmeh, M. (2021). Alternative RNA splicing in stem cells and cancer stem cells: Importance of transcript-based expression analysis.. World J Stem Cells, 13(10), 1394-1416.
Scopus8 WoS3 Europe PMC62021 Liyaghatdar, Z., Pezeshkian, Z., Mohammadi Dehcheshmeh, M., & Ebrahimie, E. (2021). Fast school closures correspond with a lower rate of COVID-19 incidence and deaths in most countries. Informatics in Medicine Unlocked, 27, 100805-1-100805-6.
Scopus3 Europe PMC22020 Butcher, R. G., Pettett, L. M., Fabijan, J., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Speight, K. N., . . . Trott, D. J. (2020). Periodontal disease in free-ranging koalas (Phascolarctos cinereus) from the Mount Lofty Ranges, South Australia, and its association with koala retrovirus infection.. Australian veterinary journal, 98(5), 200-206.
Scopus11 WoS7 Europe PMC62020 Kidsley, A. K., O'Dea, M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., Saputra, S., Jordan, D., . . . Trott, D. J. (2020). Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats. Veterinary Microbiology, 245(-), 108685-1-108685-7.
Scopus14 WoS10 Europe PMC122020 Rahmatizadeh, F., Pashaei-Asl, F., Mohammadi Dehcheshmeh, M., Rahbar, S., Laleataei, M., Aziz, S. G. G., . . . Pashaiasl, M. (2020). Reduction in the viability of human cervical cancer hela cell line via indirect co-culture with amniotic fluid-derived mesenchymal stem cells. International Journal of Women's Health and Reproduction Sciences, 8(3), 319-327.
Scopus32019 Alanazi, I. O., Al Shehri, Z. S., Ebrahimie, E., Giahi, H., & Mohammadi-Dehcheshmeh, M. (2019). Non-coding and coding genomic variants distinguish prostate cancer, castration-resistant prostate cancer, familial prostate cancer, and metastatic castration-resistant prostate cancer from each other. Molecular Carcinogenesis, 58(6), 13 pages.
Scopus11 WoS8 Europe PMC82019 Tahmasebi, A., Ebrahimie, E., Pakniyat, H., Ebrahimi, M., & Mohammadi-Dehcheshmeh, M. (2019). Insights from the Echinacea purpurea (L.) Moench transcriptome: Global reprogramming of gene expression patterns towards activation of secondary metabolism pathways. Industrial Crops and Products, 132, 365-376.
Scopus12 WoS6 Europe PMC22019 Speight, K. N., Houston-Francis, M., Mohammadi Dehcheshmeh, M., Ebrahimie, E., Saputra, S., & Trott, D. J. (2019). Oxalate-degrading bacteria, including Oxalobacter formigenes, colonise the gastrointestinal tract of healthy koalas (Phascolarctos cinereus) and those with oxalate nephrosis. Australian Veterinary Journal, 97(5), 166-170.
Scopus5 WoS5 Europe PMC22019 Ebrahimi, M., Mohammadi-Dehcheshmeh, M., Ebrahimie, E., & Petrovski, K. R. (2019). Comprehensive analysis of machine learning models for prediction of sub-clinical mastitis: Deep Learning and Gradient-Boosted Trees outperform other models. Computers in Biology and Medicine, 114, 9 pages.
Scopus124 WoS63 Europe PMC492019 Rahbar, S., Pashaiasl, M., Ezzati, M., Ahmadi AsrBadr, Y., Mohammadi Dehcheshmeh, M., Mohammadi, S. A., & Ghaffari Novin, M. (2019). MicroRNA-based regulatory circuit involved in sperm infertility.. Andrologia, 52(1), e13453.
Scopus24 WoS8 Europe PMC182019 Tahmasebi, A., Ebrahimie, E., Pakniyat, H., Ebrahimi, M., & Mohammadi Dehcheshmeh, M. (2019). Tissue-specific transcriptional biomarkers in medicinal plants: Application of large-scale meta-analysis and computational systems biology. Gene, 691, 114-124.
Scopus14 WoS7 Europe PMC102018 Alanazi, I., AlYahya, S., Ebrahimie, E., & Mohammadi-Dehcheshmeh, M. (2018). Computational systems biology analysis of biomarkers in lung cancer; unravelling genomic regions which frequently encode biomarkers, enriched pathways, and new candidates. Gene, 659, 29-36.
Scopus14 WoS8 Europe PMC72018 Mohammadi Dehcheshmeh, M., Niazi, A., Ebrahimi, M., Tahsili, M., Nurollah, Z., Ebrahimi Khaksefidi, R., . . . Ebrahimie, E. (2018). Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of Medicago truncatula by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis. Frontiers in Plant Science, 9, 24 pages.
Scopus24 WoS16 Europe PMC152016 Kargarfard, F., Sami, A., Mohammadi-Dehcheshmeh, M., & Ebrahimie, E. (2016). Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments. BMC Genomics, 17(1), 925-1-925-10.
Scopus22 WoS17 Europe PMC182015 Tavizi, A., Javaran, M., Moieni, A., Mohammadi-Dehcheshmeh, M., Mohebodini, M., & Ebrahimie, E. (2015). Root and shoot parts of strawberry: factories for production of functional human pro-insulin. Molecular Biology Reports, 42(5), 1013-1023.
Scopus8 WoS8 Europe PMC32014 Chiasson, D., Loughlin, P., Mazurkiewicz, D., Mohammadidehcheshmeh, M., Fedorova, E., Okamoto, M., . . . Kaiser, B. (2014). Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH₄⁺ transport. Proceedings of the National Academy of Sciences of the United States of America, 111(13), 4814-4819.
Scopus84 WoS67 Europe PMC602014 Zinati, Z., Zamansani, F., Hossein KayvanJoo, A., Ebrahimi, M., Ebrahimi, M., Ebrahimie, E., & Mohammadi Dehcheshmeh, M. (2014). New layers in understanding and predicting α-linolenic acid content in plants using amino acid characteristics of omega-3 fatty acid desaturase. Computers in Biology and Medicine, 54, 14-23.
Scopus18 WoS13 Europe PMC72014 Mohammadi Dehcheshmeh, M., Ebrahimie, E., Tyerman, S., & Kaiser, B. (2014). A novel method based on combination of semi-in vitro and in vivo conditions in Agrobacterium rhizogenes-mediated hairy root transformation of Glycine species. In Vitro Cellular & Developmental Biology-plant, 50(2), 282-291.
Scopus11 WoS112012 Tahmasebi, A., Aram, F., Ebrahimi, M., Mohammadi Dehcheshmeh, M., & Ebrahimie, E. (2012). Genome-wide analysis of cytosolic and chloroplastic isoforms of glutathione reductase in plant cells. Plant Omics, 5(2), 94-102.
Scopus17 WoS132011 Tahrokh, E., Ebrahimi, M., Zamansani, F., Ebrahimi, M., Sarvestani, N., Mohammadi Dehcheshmeh, M., . . . Ebrahimie, E. (2011). Comparative study of ammonium transporters in different organisms by study of a large number of structural protein features via data mining algorithms. Genes and Genomics, 33(5), 565-575.
Scopus11 WoS112010 Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Ebrahimi, M., & Ebrahimi, M. (2010). A study on functional modulations of genome in somatic embryogenesis pathway using EST analysis. NEW BIOTECHNOLOGY, 27, S43.
WoS22008 Mohammadi-Dehcheshmeh, M., Khalighi, A., Naderi, R., Sardari, M., & Ebrahimie, E. (2008). Petal: a reliable explant for direct bulblet regeneration of endangered wild populations of Fritillaria imperialis L.. Acta Physiologiae Plantarum, 30(3), 395-399.
Scopus25 WoS162007 Ebrahimie, E., Naghavi, M. R., Hosseinzadeh, A., Behamta, M. R., Mohammadi-Dehcheshmeh, M., Sarrafi, A., & Spangenberg, G. (2007). Induction and comparison of different in vitro morphogenesis pathways using embryo of cumin (Cuminum cyminum L.) as a model material. Plant Cell Tissue and Organ Culture, 90(3), 293-311.
Scopus20 WoS142007 Ebrahimie, E., Hosseinzadeh, A., Nagavi, M. R., Ghannadha, M. R., & Mohammadie-Dehcheshmeh, M. (2007). Combined direct regeneration protocols in tissue culture of different cumin genotypes based on pre-existing meristems. Pakistan Journal of Biological Sciences, 10(9), 1360-1370.
Scopus32007 Mohammadi-Dehcheshmeh, M., Khalighi, A., Naderi, R., Ebrahimie, E., & Sardari, M. (2007). Indirect somatic embryogenesis from petal explant of endangered wild population of Fritillaria imperialis. Pakistan Journal of Biological Sciences, 10(11), 1875-1879.
Scopus132006 Ebrahimie, E., Habashy, A. A., Mohammadie-Dehcheshmeh, M., Ghannadha, M. R., Ghareyazie, B., & Yazdi-Amadi, B. (2006). Direct shoot regeneration from mature embryo as a rapid and genotype-independent pathway in tissue culture of heterogeneous diverse sets of cumin (Cuminum cyminum L.) genotypes. In Vitro Cellular and Developmental Biology Plant, 42(5), 455-460.
Scopus26 WoS232003 Ebrahimie, E., Habashi, A. A., Ghareyazie, B., Ghannadha, M., & Mohammadie, M. (2003). A rapid and efficient method for regeneration of plantlets from embryo explants of cumin (Cuminum cyminum). Plant Cell Tissue and Organ Culture, 75(1), 19-25.
Scopus35 WoS23 -
Conference Papers
Year Citation 2009 Ebrahimi, M., Ebrahimie, E., Ebrahimi, M., Deihimi, T., Delavari, A., & Mohammadi-Dehcheshmeh, M. (2009). Application of neural networks methods to define the most important features contributing to xylanase enzyme thermostability. In IEEE Congress on Evolutionary Computation, 2009. CEC '09 (pp. 2885-2891). USA: IEEE.
DOI Scopus5 WoS12006 Mohammadi-Dehcheshmeh, M., Khalighi, A., Ebrahimie, E., Sardari, M., & Naderi, R. (2006). Direct bulblet regeneration from mature embryo:: A rapid, efficient and genotype-independent in vitro morphogenesis pathway for preservation of endangered wild populations of <i>Fritillaria imperialis</i> and <i>Fritillaria persica</i>. In HORTSCIENCE Vol. 41 (pp. 1066). AMER SOC HORTICULTURAL SCIENCE.
WoS32006 Ebrahimie, E., Mohammadi-Dehcheshmeh, M., & Sardari, M. (2006). <i>Fritillaria</i> species are at risk of extinction in Iran:: Study on effective factors and necessity of international attention. In HORTSCIENCE Vol. 41 (pp. 1002). AMER SOC HORTICULTURAL SCIENCE.
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