Manijeh Mohammadi Dehcheshmeh
School of Animal and Veterinary Science
Faculty of Sciences, Engineering and Technology
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Appointments
Date Position Institution name 2016 - ongoing University Postdoctoral Fellow Level A (Step 8) University of Adelaide, Adelaide 2014 - 2014 Casual Data Analyst University of South Australia -
Education
Date Institution name Country Title 2008 - 2014 University of Adelaide, Adelaide Australia PhD
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Journals
Year Citation 2022 Xie, S., Trott, D. J., Saputra, S., Ebrahimie, E., Mohammadi Dehcheshmeh, M., Page, C., . . . Govendir, M. (2022). Pharmacokinetic profile and effect on the faecal microbiome of a single dose of pradofloxacin oral suspension in the rabbit (Oryctolagus cuniculus). Journal of Veterinary Pharmacology and Therapeutics, 45(2), 203-212.
2022 Govic, A., Nasser, H., Levay, E. A., Zelko, M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., . . . Hazi, A. (2022). Long-Term Calorie Restriction Alters Anxiety-like Behaviour and the Brain and Adrenal Gland Transcriptomes of the Ageing Male Rat. Nutrients, 14(21), 18 pages.
WoS12021 Mohammadi-Dehcheshmeh, M., Moghbeli, S. M., Rahimirad, S., Alanazi, I. O., Shehri, Z. S. A., & Ebrahimie, E. (2021). A Transcription Regulatory Sequence in the 5' Untranslated Region of SARS-CoV-2 Is Vital for Virus Replication with an Altered Evolutionary Pattern against Human Inhibitory MicroRNAs.. Cells, 10(2), 319.
Scopus14 WoS13 Europe PMC122021 Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Laven, R., & Petrovski, K. (2021). Rule Discovery in Milk Content towards Mastitis Diagnosis: Dealing with Farm Heterogeneity over Multiple Years through Classification Based on Associations. Animals, 11(6), 1-13.
Scopus7 WoS6 Europe PMC52021 Yip, S., Mohammadi Dehcheshmeh, M., McLelland, D. J., Boardman, W. S. J., Saputra, S., Ebrahimie, E., . . . Trott, D. J. (2021). Porphyromonas spp., Fusobacterium spp., and Bacteroides spp. dominate microbiota in the course of macropod progressive periodontal disease. Scientific reports, 11(1), 17775-1-17775-10.
Scopus2 WoS2 Europe PMC12021 Ebrahimie, E., Zamansani, F., Alanazi, I. O., Sabi, E. M., Khazandi, M., Ebrahimi, F., . . . Ebrahimi, M. (2021). Advances in understanding the specificity function of transporters by machine learning. Computers in Biology and Medicine, 138, 1-8.
Scopus2 WoS22021 Esmaeili, F., Lohrasebi, T., Mohammadi-Dehcheshmeh, M., & Ebrahimie, E. (2021). Evaluation of the effectiveness of herbal components based on their regulatory signature on carcinogenic cancer cells. Cells, 10(11), 3139.
Scopus1 WoS1 Europe PMC12021 Ebrahimie, E., Rahimirad, S., Tahsili, M., & Mohammadi Dehcheshmeh, M. (2021). Alternative RNA splicing in stem cells and cancer stem cells: Importance of transcript-based expression analysis.. World J Stem Cells, 13(10), 1394-1416.
Scopus2 WoS2 Europe PMC12021 Liyaghatdar, Z., Pezeshkian, Z., Mohammadi Dehcheshmeh, M., & Ebrahimie, E. (2021). Fast school closures correspond with a lower rate of COVID-19 incidence and deaths in most countries. Informatics in Medicine Unlocked, 27, 100805-1-100805-6.
Scopus12020 Butcher, R. G., Pettett, L. M., Fabijan, J., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Speight, K. N., . . . Trott, D. J. (2020). Periodontal disease in free-ranging koalas (Phascolarctos cinereus) from the Mount Lofty Ranges, South Australia, and its association with koala retrovirus infection.. Australian veterinary journal, 98(5), 200-206.
Scopus7 WoS7 Europe PMC52020 Kidsley, A. K., O'Dea, M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., Saputra, S., Jordan, D., . . . Trott, D. J. (2020). Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats. Veterinary Microbiology, 245(-), 108685-1-108685-7.
Scopus8 WoS7 Europe PMC62020 Rahmatizadeh, F., Pashaei-Asl, F., Mohammadi Dehcheshmeh, M., Rahbar, S., Laleataei, M., Aziz, S. G. G., . . . Pashaiasl, M. (2020). Reduction in the viability of human cervical cancer hela cell line via indirect co-culture with amniotic fluid-derived mesenchymal stem cells. International Journal of Women's Health and Reproduction Sciences, 8(3), 319-327.
2019 Tahmasebi, A., Ebrahimie, E., Pakniyat, H., Ebrahimi, M., & Mohammadi Dehcheshmeh, M. (2019). Tissue-specific transcriptional biomarkers in medicinal plants: Application of large-scale meta-analysis and computational systems biology. Gene, 691, 114-124.
Scopus7 WoS6 Europe PMC42019 Alanazi, I. O., Al Shehri, Z. S., Ebrahimie, E., Giahi, H., & Mohammadi-Dehcheshmeh, M. (2019). Non-coding and coding genomic variants distinguish prostate cancer, castration-resistant prostate cancer, familial prostate cancer, and metastatic castration-resistant prostate cancer from each other. Molecular Carcinogenesis, 58(6), 13 pages.
Scopus7 WoS7 Europe PMC52019 Tahmasebi, A., Ebrahimie, E., Pakniyat, H., Ebrahimi, M., & Mohammadi-Dehcheshmeh, M. (2019). Insights from the Echinacea purpurea (L.) Moench transcriptome: Global reprogramming of gene expression patterns towards activation of secondary metabolism pathways. Industrial Crops and Products, 132, 365-376.
Scopus6 WoS62019 Speight, K. N., Houston-Francis, M., Mohammadi Dehcheshmeh, M., Ebrahimie, E., Saputra, S., & Trott, D. J. (2019). Oxalate-degrading bacteria, including Oxalobacter formigenes, colonise the gastrointestinal tract of healthy koalas (Phascolarctos cinereus) and those with oxalate nephrosis. Australian Veterinary Journal, 97(5), 166-170.
Scopus5 WoS5 Europe PMC12019 Ebrahimi, M., Mohammadi-Dehcheshmeh, M., Ebrahimie, E., & Petrovski, K. R. (2019). Comprehensive analysis of machine learning models for prediction of sub-clinical mastitis: Deep Learning and Gradient-Boosted Trees outperform other models. Computers in Biology and Medicine, 114, 9 pages.
Scopus61 WoS54 Europe PMC192019 Rahbar, S., Pashaiasl, M., Ezzati, M., Ahmadi AsrBadr, Y., Mohammadi Dehcheshmeh, M., Mohammadi, S. A., & Ghaffari Novin, M. (2019). MicroRNA-based regulatory circuit involved in sperm infertility.. Andrologia, 52(1), e13453.
Scopus10 WoS8 Europe PMC62018 Alanazi, I., AlYahya, S., Ebrahimie, E., & Mohammadi-Dehcheshmeh, M. (2018). Computational systems biology analysis of biomarkers in lung cancer; unravelling genomic regions which frequently encode biomarkers, enriched pathways, and new candidates. Gene, 659, 29-36.
Scopus8 WoS8 Europe PMC62018 Mohammadi Dehcheshmeh, M., Niazi, A., Ebrahimi, M., Tahsili, M., Nurollah, Z., Ebrahimi Khaksefidi, R., . . . Ebrahimie, E. (2018). Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of Medicago truncatula by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis. Frontiers in Plant Science, 9, 24 pages.
Scopus15 WoS15 Europe PMC82016 Kargarfard, F., Sami, A., Mohammadi-Dehcheshmeh, M., & Ebrahimie, E. (2016). Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments. BMC Genomics, 17(1), 925-1-925-10.
Scopus16 WoS15 Europe PMC102015 Tavizi, A., Javaran, M., Moieni, A., Mohammadi-Dehcheshmeh, M., Mohebodini, M., & Ebrahimie, E. (2015). Root and shoot parts of strawberry: factories for production of functional human pro-insulin. Molecular Biology Reports, 42(5), 1013-1023.
Scopus5 WoS7 Europe PMC22014 Chiasson, D., Loughlin, P., Mazurkiewicz, D., Mohammadidehcheshmeh, M., Fedorova, E., Okamoto, M., . . . Kaiser, B. (2014). Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH₄⁺ transport. Proceedings of the National Academy of Sciences of the United States of America, 111(13), 4814-4819.
Scopus60 WoS62 Europe PMC352014 Zinati, Z., Zamansani, F., Hossein KayvanJoo, A., Ebrahimi, M., Ebrahimi, M., Ebrahimie, E., & Mohammadi Dehcheshmeh, M. (2014). New layers in understanding and predicting α-linolenic acid content in plants using amino acid characteristics of omega-3 fatty acid desaturase. Computers in Biology and Medicine, 54, 14-23.
Scopus15 WoS13 Europe PMC62014 Mohammadi Dehcheshmeh, M., Ebrahimie, E., Tyerman, S., & Kaiser, B. (2014). A novel method based on combination of semi-in vitro and in vivo conditions in Agrobacterium rhizogenes-mediated hairy root transformation of Glycine species. In Vitro Cellular & Developmental Biology-plant, 50(2), 282-291.
Scopus9 WoS102012 Tahmasebi, A., Aram, F., Ebrahimi, M., Mohammadi Dehcheshmeh, M., & Ebrahimie, E. (2012). Genome-wide analysis of cytosolic and chloroplastic isoforms of glutathione reductase in plant cells. Plant Omics, 5(2), 94-102.
Scopus13 WoS122011 Tahrokh, E., Ebrahimi, M., Zamansani, F., Ebrahimi, M., Sarvestani, N., Mohammadi Dehcheshmeh, M., . . . Ebrahimie, E. (2011). Comparative study of ammonium transporters in different organisms by study of a large number of structural protein features via data mining algorithms. Genes and Genomics, 33(5), 565-575.
Scopus11 WoS112010 Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Ebrahimi, M., & Ebrahimi, M. (2010). A study on functional modulations of genome in somatic embryogenesis pathway using EST analysis. NEW BIOTECHNOLOGY, 27, S43.
WoS22008 Mohammadi-Dehcheshmeh, M., Khalighi, A., Naderi, R., Sardari, M., & Ebrahimie, E. (2008). Petal: a reliable explant for direct bulblet regeneration of endangered wild populations of Fritillaria imperialis L.. Acta Physiologiae Plantarum, 30(3), 395-399.
Scopus20 WoS142007 Ebrahimie, E., Naghavi, M. R., Hosseinzadeh, A., Behamta, M. R., Mohammadi-Dehcheshmeh, M., Sarrafi, A., & Spangenberg, G. (2007). Induction and comparison of different in vitro morphogenesis pathways using embryo of cumin (Cuminum cyminum L.) as a model material. Plant Cell, Tissue and Organ Culture, 90(3), 293-311.
Scopus13 WoS122007 Ebrahimie, E., Hosseinzadeh, A., Nagavi, M. R., Ghannadha, M. R., & Mohammadie-Dehcheshmeh, M. (2007). Combined direct regeneration protocols in tissue culture of different cumin genotypes based on pre-existing meristems. Pakistan Journal of Biological Sciences, 10(9), 1360-1370.
2007 Mohammadi-Dehcheshmeh, M., Khalighi, A., Naderi, R., Ebrahimie, E., & Sardari, M. (2007). Indirect somatic embryogenesis from petal explant of endangered wild population of Fritillaria imperialis. Pakistan Journal of Biological Sciences, 10(11), 1875-1879.
Scopus112006 Ebrahimie, E., Habashy, A. A., Mohammadie-Dehcheshmeh, M., Ghannadha, M. R., Ghareyazie, B., & Yazdi-Amadi, B. (2006). Direct shoot regeneration from mature embryo as a rapid and genotype-independent pathway in tissue culture of heterogeneous diverse sets of cumin (Cuminum cyminum L.) genotypes. In Vitro Cellular and Developmental Biology - Plant, 42(5), 455-460.
Scopus22 WoS222003 Ebrahimie, E., Habashi, A. A., Ghareyazie, B., Ghannadha, M., & Mohammadie, M. (2003). A rapid and efficient method for regeneration of plantlets from embryo explants of cumin (Cuminum cyminum). Plant Cell, Tissue and Organ Culture, 75(1), 19-25.
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Conference Papers
Year Citation 2009 Ebrahimi, M., Ebrahimie, E., Ebrahimi, M., Deihimi, T., Delavari, A., & Mohammadi-Dehcheshmeh, M. (2009). Application of neural networks methods to define the most important features contributing to xylanase enzyme thermostability. In IEEE Congress on Evolutionary Computation, 2009. CEC '09 (pp. 2885-2891). USA: IEEE.
Scopus5 WoS12006 Mohammadi-Dehcheshmeh, M., Khalighi, A., Ebrahimie, E., Sardari, M., & Naderi, R. (2006). Direct bulblet regeneration from mature embryo: A rapid, efficient and genotype-independent in vitro morphogenesis pathway for preservation of endangered wild populations of Fritillaria imperialis and Fritillaria persica. In HORTSCIENCE Vol. 41 (pp. 1066). AMER SOC HORTICULTURAL SCIENCE.
WoS32006 Ebrahimie, E., Mohammadi-Dehcheshmeh, M., & Sardari, M. (2006). Fritillaria species are at risk of extinction in Iran: Study on effective factors and necessity of international attention. In HORTSCIENCE Vol. 41 (pp. 1002). AMER SOC HORTICULTURAL SCIENCE.
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