Manijeh Mohammadi Dehcheshmeh
Grant-Funded Researcher (A)
School of Animal and Veterinary Science
Faculty of Sciences, Engineering and Technology
| Date | Position | Institution name |
|---|---|---|
| 2016 - ongoing | University Postdoctoral Fellow Level A (Step 8) | University of Adelaide, Adelaide |
| 2014 - 2014 | Casual Data Analyst | University of South Australia |
| Date | Institution name | Country | Title |
|---|---|---|---|
| 2008 - 2014 | University of Adelaide, Adelaide | Australia | PhD |
| Year | Citation |
|---|---|
| 2025 | Lee Chang, K. J., Gorron Gomez, E., Ebrahimie, E., Dehcheshmeh, M. M., Frampton, D. M. F., & Zhou, X. -R. (2025). Transcriptomic Signature of Lipid Production in Australian Aurantiochytrium sp. TC20.. Mar Biotechnol (NY), 27(1), 43. |
| 2025 | Grant, L., Mohammadi Dehcheshmeh, M., Ebrahimie, E., Khabiri, A., Veltman, T., Shipstone, M., & Trott, D. J. (2025). The effect of daily oral probiotic and postbiotic supplementation on the canine skin microbiota: Insights from culture-dependent and long-read 16S rRNA gene sequencing methods.. Veterinary dermatology, 36(5), 581-592. Scopus3 WoS3 Europe PMC3 |
| 2025 | Lawless, C., Kovacs, K., Mohammadi Dehcheshmeh, M., Ebrahimie, E., Messele, Y. E., Snowball, M., . . . McLelland, D. J. (2025). Higher Dietary Fibre Increases the Faecal Microbiome Diversity of Golden Lion Tamarins (Leontopithecus rosalia). Animals, 15(13), 1831. |
| 2025 | Pettett, L., Ebrahimie, E., Chinkangsadarn, T., Mohammadi Dehcheshmeh, M., Trott, D. J., & Bird, P. S. (2025). The Oral Microbiome in Queensland Free-Ranging Koalas (Phascolarctos cinereus) and Its Association with Age and Periodontal Disease. Animals, 15(13), 1834. |
| 2025 | Mohammadi Dehcheshmeh, M., Grant, L., Ebrahimie, E., Khabiri, A., Hemmatzadeh, F., Shipstone, M., & Trott, D. J. (2025). Oral probiotic and postbiotic supplementation enhances the abundance of Lactobacillus acidophilus, Lactobacillus johnsonii, and Limosilactobacillus reuteri in both canine skin and gastrointestinal microbiota: insights from long-read 16S rRNA gene sequencing.. Vet Res Commun, 50(1), 29. |
| 2024 | Vassileff, N., Spiers, J. G., Lee, J. D., Woodruff, T. M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., . . . Cheng, L. (2024). A Panel of miRNA Biomarkers Common to Serum and Brain-Derived Extracellular Vesicles Identified in Mouse Model of Amyotrophic Lateral Sclerosis. Molecular Neurobiology, 61(8), 5901-5915. Scopus6 WoS5 Europe PMC5 |
| 2024 | Zhao, K., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Lewsey, M. G., Zheng, L., & Hoogenraad, N. J. (2024). Transcriptomic signature of cancer cachexia by integration of machine learning, literature mining and meta-analysis.. Computers in biology and medicine, 172, 108233. Scopus4 Europe PMC4 |
| 2024 | Pashaei-Asl, R., Motaali, S., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Ebrahimi, M., & Pashaiasl, M. (2024). Delivery of doxorubicin by Fe<sub>3</sub>O<sub>4</sub> nanoparticles, reduces multidrug resistance gene expression in ovarian cancer cells.. Pathology, research and practice, 263, 155667. Scopus2 WoS2 Europe PMC1 |
| 2023 | Homer, B., Judd, J., Mohammadi Dehcheshmeh, M., Ebrahimie, E., & Trott, D. J. (2023). Gut Microbiota and Behavioural Issues in Production, Performance, and Companion Animals: A Systematic Review. Animals, 13(9), 1458. Scopus24 WoS20 Europe PMC20 |
| 2023 | Hazi, A., Ebrahimie, E., Levay, E. A., Mohammadi-Dehcheshmeh, M., Zelko, M., Govic, A., & Nasser, H. (2023). Crosstalk between short- and long-term calorie restriction transcriptomic signatures with anxiety-like behavior, aging, and neurodegeneration: implications for drug repurposing.. Front Behav Neurosci, 17, 1257881. Scopus1 WoS1 |
| 2022 | Xie, S., Trott, D. J., Saputra, S., Ebrahimie, E., Mohammadi Dehcheshmeh, M., Page, C., . . . Govendir, M. (2022). Pharmacokinetic profile and effect on the faecal microbiome of a single dose of pradofloxacin oral suspension in the rabbit (Oryctolagus cuniculus). Journal of Veterinary Pharmacology and Therapeutics, 45(2), 203-212. Scopus4 WoS4 Europe PMC4 |
| 2022 | Alanazi, I. O., Alamery, S. F., Ebrahimie, E., & Mohammadi-Dehcheshmeh, M. (2022). Splice-disrupt genomic variants in prostate cancer. Molecular Biology Reports, 49(6), 4237-4246. Scopus5 WoS3 Europe PMC3 |
| 2022 | Nezamivand-Chegini, M., Metzger, S., Moghadam, A., Tahmasebi, A., Koprivova, A., Eshghi, S., . . . Ebrahimie, E. (2022). Nitrogen and phosphorus deficiencies alter primary and secondary metabolites of soybean roots. |
| 2022 | Govic, A., Nasser, H., Levay, E. A., Zelko, M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., . . . Hazi, A. (2022). Long-Term Calorie Restriction Alters Anxiety-like Behaviour and the Brain and Adrenal Gland Transcriptomes of the Ageing Male Rat. Nutrients, 14(21), 1-18. Scopus16 WoS16 Europe PMC16 |
| 2021 | Mohammadi-Dehcheshmeh, M., Moghbeli, S. M., Rahimirad, S., Alanazi, I. O., Shehri, Z. S. A., & Ebrahimie, E. (2021). A Transcription Regulatory Sequence in the 5' Untranslated Region of SARS-CoV-2 Is Vital for Virus Replication with an Altered Evolutionary Pattern against Human Inhibitory MicroRNAs.. Cells, 10(2), 319. Scopus26 WoS24 Europe PMC31 |
| 2021 | Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Laven, R., & Petrovski, K. (2021). Rule Discovery in Milk Content towards Mastitis Diagnosis: Dealing with Farm Heterogeneity over Multiple Years through Classification Based on Associations. Animals, 11(6), 1-13. Scopus13 WoS10 Europe PMC7 |
| 2021 | Yip, S., Mohammadi Dehcheshmeh, M., McLelland, D. J., Boardman, W. S. J., Saputra, S., Ebrahimie, E., . . . Trott, D. J. (2021). Porphyromonas spp., Fusobacterium spp., and Bacteroides spp. dominate microbiota in the course of macropod progressive periodontal disease. Scientific reports, 11(1), 17775-1-17775-10. Scopus21 WoS17 Europe PMC14 |
| 2021 | Ebrahimie, E., Zamansani, F., Alanazi, I. O., Sabi, E. M., Khazandi, M., Ebrahimi, F., . . . Ebrahimi, M. (2021). Advances in understanding the specificity function of transporters by machine learning. Computers in Biology and Medicine, 138(104893), 1-8. Scopus11 WoS11 Europe PMC6 |
| 2021 | Esmaeili, F., Lohrasebi, T., Mohammadi-Dehcheshmeh, M., & Ebrahimie, E. (2021). Evaluation of the effectiveness of herbal components based on their regulatory signature on carcinogenic cancer cells. Cells, 10(11), 3139. Scopus6 WoS5 Europe PMC5 |
| 2021 | Ebrahimie, E., Rahimirad, S., Tahsili, M., & Mohammadi Dehcheshmeh, M. (2021). Alternative RNA splicing in stem cells and cancer stem cells: Importance of transcript-based expression analysis.. World J Stem Cells, 13(10), 1394-1416. Scopus8 WoS8 Europe PMC6 |
| 2021 | Liyaghatdar, Z., Pezeshkian, Z., Mohammadi Dehcheshmeh, M., & Ebrahimie, E. (2021). Fast school closures correspond with a lower rate of COVID-19 incidence and deaths in most countries. Informatics in Medicine Unlocked, 27, 100805-1-100805-6. Scopus4 Europe PMC2 |
| 2020 | Butcher, R. G., Pettett, L. M., Fabijan, J., Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Speight, K. N., . . . Trott, D. J. (2020). Periodontal disease in free-ranging koalas (Phascolarctos cinereus) from the Mount Lofty Ranges, South Australia, and its association with koala retrovirus infection.. Australian veterinary journal, 98(5), 200-206. Scopus11 WoS10 Europe PMC9 |
| 2020 | Kidsley, A. K., O'Dea, M., Ebrahimie, E., Mohammadi Dehcheshmeh, M., Saputra, S., Jordan, D., . . . Trott, D. J. (2020). Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats. Veterinary Microbiology, 245(-), 108685-1-108685-7. Scopus14 WoS15 Europe PMC14 |
| 2020 | Rahmatizadeh, F., Pashaei-Asl, F., Mohammadi Dehcheshmeh, M., Rahbar, S., Laleataei, M., Aziz, S. G. G., . . . Pashaiasl, M. (2020). Reduction in the viability of human cervical cancer hela cell line via indirect co-culture with amniotic fluid-derived mesenchymal stem cells. International Journal of Women's Health and Reproduction Sciences, 8(3), 319-327. Scopus3 |
| 2019 | Alanazi, I. O., Al Shehri, Z. S., Ebrahimie, E., Giahi, H., & Mohammadi-Dehcheshmeh, M. (2019). Non-coding and coding genomic variants distinguish prostate cancer, castration-resistant prostate cancer, familial prostate cancer, and metastatic castration-resistant prostate cancer from each other. Molecular Carcinogenesis, 58(6), 13 pages. Scopus11 WoS11 Europe PMC8 |
| 2019 | Tahmasebi, A., Ebrahimie, E., Pakniyat, H., Ebrahimi, M., & Mohammadi-Dehcheshmeh, M. (2019). Insights from the Echinacea purpurea (L.) Moench transcriptome: Global reprogramming of gene expression patterns towards activation of secondary metabolism pathways. Industrial Crops and Products, 132, 365-376. Scopus13 WoS13 Europe PMC2 |
| 2019 | Speight, K. N., Houston-Francis, M., Mohammadi Dehcheshmeh, M., Ebrahimie, E., Saputra, S., & Trott, D. J. (2019). Oxalate-degrading bacteria, including Oxalobacter formigenes, colonise the gastrointestinal tract of healthy koalas (Phascolarctos cinereus) and those with oxalate nephrosis. Australian Veterinary Journal, 97(5), 166-170. Scopus5 WoS5 Europe PMC2 |
| 2019 | Ebrahimi, M., Mohammadi-Dehcheshmeh, M., Ebrahimie, E., & Petrovski, K. R. (2019). Comprehensive analysis of machine learning models for prediction of sub-clinical mastitis: Deep Learning and Gradient-Boosted Trees outperform other models. Computers in Biology and Medicine, 114, 1-9. Scopus130 WoS102 Europe PMC57 |
| 2019 | Rahbar, S., Pashaiasl, M., Ezzati, M., Ahmadi AsrBadr, Y., Mohammadi Dehcheshmeh, M., Mohammadi, S. A., & Ghaffari Novin, M. (2019). MicroRNA-based regulatory circuit involved in sperm infertility.. Andrologia, 52(1), e13453. Scopus24 WoS24 Europe PMC21 |
| 2019 | Tahmasebi, A., Ebrahimie, E., Pakniyat, H., Ebrahimi, M., & Mohammadi Dehcheshmeh, M. (2019). Tissue-specific transcriptional biomarkers in medicinal plants: Application of large-scale meta-analysis and computational systems biology. Gene, 691, 114-124. Scopus15 WoS13 Europe PMC11 |
| 2018 | Alanazi, I., AlYahya, S., Ebrahimie, E., & Mohammadi-Dehcheshmeh, M. (2018). Computational systems biology analysis of biomarkers in lung cancer; unravelling genomic regions which frequently encode biomarkers, enriched pathways, and new candidates. Gene, 659, 29-36. Scopus14 WoS10 Europe PMC10 |
| 2018 | Mohammadi Dehcheshmeh, M., Niazi, A., Ebrahimi, M., Tahsili, M., Nurollah, Z., Ebrahimi Khaksefidi, R., . . . Ebrahimie, E. (2018). Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of Medicago truncatula by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis. Frontiers in Plant Science, 9(1550), 1-24. Scopus25 WoS22 Europe PMC17 |
| 2016 | Kargarfard, F., Sami, A., Mohammadi-Dehcheshmeh, M., & Ebrahimie, E. (2016). Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments. BMC Genomics, 17(1), 925-1-925-10. Scopus22 WoS20 Europe PMC20 |
| 2015 | Tavizi, A., Javaran, M., Moieni, A., Mohammadi-Dehcheshmeh, M., Mohebodini, M., & Ebrahimie, E. (2015). Root and shoot parts of strawberry: factories for production of functional human pro-insulin. Molecular Biology Reports, 42(5), 1013-1023. Scopus8 WoS9 Europe PMC3 |
| 2014 | Chiasson, D., Loughlin, P., Mazurkiewicz, D., Mohammadidehcheshmeh, M., Fedorova, E., Okamoto, M., . . . Kaiser, B. (2014). Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH₄⁺ transport. Proceedings of the National Academy of Sciences of the United States of America, 111(13), 4814-4819. Scopus87 WoS83 Europe PMC71 |
| 2014 | Zinati, Z., Zamansani, F., Hossein KayvanJoo, A., Ebrahimi, M., Ebrahimi, M., Ebrahimie, E., & Mohammadi Dehcheshmeh, M. (2014). New layers in understanding and predicting α-linolenic acid content in plants using amino acid characteristics of omega-3 fatty acid desaturase. Computers in Biology and Medicine, 54, 14-23. Scopus18 WoS16 Europe PMC8 |
| 2014 | Mohammadi Dehcheshmeh, M., Ebrahimie, E., Tyerman, S., & Kaiser, B. (2014). A novel method based on combination of semi-in vitro and in vivo conditions in Agrobacterium rhizogenes-mediated hairy root transformation of Glycine species. In Vitro Cellular & Developmental Biology-plant, 50(2), 282-291. Scopus12 WoS13 |
| 2012 | Tahmasebi, A., Aram, F., Ebrahimi, M., Mohammadi Dehcheshmeh, M., & Ebrahimie, E. (2012). Genome-wide analysis of cytosolic and chloroplastic isoforms of glutathione reductase in plant cells. Plant Omics, 5(2), 94-102. Scopus17 WoS15 |
| 2011 | Tahrokh, E., Ebrahimi, M., Zamansani, F., Ebrahimi, M., Sarvestani, N., Mohammadi Dehcheshmeh, M., . . . Ebrahimie, E. (2011). Comparative study of ammonium transporters in different organisms by study of a large number of structural protein features via data mining algorithms. Genes and Genomics, 33(5), 565-575. Scopus11 WoS11 |
| 2010 | Ebrahimie, E., Mohammadi-Dehcheshmeh, M., Ebrahimi, M., & Ebrahimi, M. (2010). A study on functional modulations of genome in somatic embryogenesis pathway using EST analysis. NEW BIOTECHNOLOGY, 27, S43. WoS2 |
| 2008 | Mohammadi-Dehcheshmeh, M., Khalighi, A., Naderi, R., Sardari, M., & Ebrahimie, E. (2008). Petal: a reliable explant for direct bulblet regeneration of endangered wild populations of Fritillaria imperialis L.. Acta Physiologiae Plantarum, 30(3), 395-399. Scopus25 WoS20 |
| 2007 | Ebrahimie, E., Naghavi, M. R., Hosseinzadeh, A., Behamta, M. R., Mohammadi-Dehcheshmeh, M., Sarrafi, A., & Spangenberg, G. (2007). Induction and comparison of different in vitro morphogenesis pathways using embryo of cumin (Cuminum cyminum L.) as a model material. Plant Cell Tissue and Organ Culture, 90(3), 293-311. Scopus21 WoS16 |
| 2007 | Ebrahimie, E., Hosseinzadeh, A., Nagavi, M. R., Ghannadha, M. R., & Mohammadie-Dehcheshmeh, M. (2007). Combined direct regeneration protocols in tissue culture of different cumin genotypes based on pre-existing meristems. Pakistan Journal of Biological Sciences, 10(9), 1360-1370. Scopus3 |
| 2007 | Mohammadi-Dehcheshmeh, M., Khalighi, A., Naderi, R., Ebrahimie, E., & Sardari, M. (2007). Indirect somatic embryogenesis from petal explant of endangered wild population of Fritillaria imperialis. Pakistan Journal of Biological Sciences, 10(11), 1875-1879. Scopus13 |
| 2006 | Ebrahimie, E., Habashy, A. A., Mohammadie-Dehcheshmeh, M., Ghannadha, M. R., Ghareyazie, B., & Yazdi-Amadi, B. (2006). Direct shoot regeneration from mature embryo as a rapid and genotype-independent pathway in tissue culture of heterogeneous diverse sets of cumin (Cuminum cyminum L.) genotypes. In Vitro Cellular and Developmental Biology Plant, 42(5), 455-460. Scopus26 WoS24 |
| 2003 | Ebrahimie, E., Habashi, A. A., Ghareyazie, B., Ghannadha, M., & Mohammadie, M. (2003). A rapid and efficient method for regeneration of plantlets from embryo explants of cumin (Cuminum cyminum). Plant Cell Tissue and Organ Culture, 75(1), 19-25. Scopus35 WoS23 |
| Year | Citation |
|---|---|
| 2009 | Ebrahimi, M., Ebrahimie, E., Ebrahimi, M., Deihimi, T., Delavari, A., & Mohammadi-Dehcheshmeh, M. (2009). Application of neural networks methods to define the most important features contributing to xylanase enzyme thermostability. In IEEE Congress on Evolutionary Computation, 2009. CEC '09 (pp. 2885-2891). USA: IEEE. DOI Scopus5 WoS1 |
| 2006 | Mohammadi-Dehcheshmeh, M., Khalighi, A., Ebrahimie, E., Sardari, M., & Naderi, R. (2006). Direct bulblet regeneration from mature embryo:: A rapid, efficient and genotype-independent in vitro morphogenesis pathway for preservation of endangered wild populations of <i>Fritillaria imperialis</i> and <i>Fritillaria persica</i>. In HORTSCIENCE Vol. 41 (pp. 1066). AMER SOC HORTICULTURAL SCIENCE. WoS3 |
| 2006 | Ebrahimie, E., Mohammadi-Dehcheshmeh, M., & Sardari, M. (2006). <i>Fritillaria</i> species are at risk of extinction in Iran:: Study on effective factors and necessity of international attention. In HORTSCIENCE Vol. 41 (pp. 1002). AMER SOC HORTICULTURAL SCIENCE. WoS5 |
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