John Maclean

Dr John Maclean

Lecturer

School of Mathematical Sciences

College of Science

Eligible to supervise Masters and PhD - email supervisor to discuss availability.


I am a Lecturer in Data Science and Statistics, with chief interests in Data Assimilation and numerical multiscale methods. For access to preprints, please follow the arXiv link below `External Profiles', at the bottom of the page.

Prospective students are encouraged to contact me directly, but may find some inspiration in the following:

Data Assimilation (DA) - the mathematical and statistical question of how to combine an uncertain model forecast with data. I am interested in:

  1. Coherent structure DA, that is, employing low-dimensional structures in the DA update in place of the original data. Research questions here may tend towards statistics (how do measurement errors in data create measurement errors in coherent structures?) or applied maths (from the oceanographic/atmospheric sciences literature; how should we employ coherent structures, and on what scales?). 
  2. Projected DA, that is, employing projections to split one DA problem into several. The advantage is that one can use a DA method with high accuracy on key parts of the DA problem, and use a DA method suited to high-dimensional inference on the remainder of the DA problem. Some overlap with coherent structures; the key in projected DA is translating dynamical information to statistical information.
  3. Non-Gaussian problems; DA algorithms are often founded on the assumption that measurement errors are distributed normally. However there are counter-examples, and work has shown that DA methods constructed for non-Gaussian measurement errors are promising. (This would be a new research area for me - based on work by Craig Bishop.)
  4. Surrogate DA, the design of DA methods where a statistical surrogate is trained to empower a large ensemble of forecasts to be approximated from a small number of computationally intensive runs of the physical model.  Many open questions - see my preprint with A/Prof. Elaine Spiller. 

Numerical Multiscale Methods - key focus is on Projective Integration, that accelerates simulation of stiff systems, and patch dynamics, that accelerates simulation of systems with fine and coarse spatial components.

  1. Projective Integration for stochastic systems; there is a wealth of literature on this topic, but to my view two questions remain. First is how to implement an accurate, fast PI solver for stochastic systems with unknown slow and fast variables. Second is how to modify such methods to nonstandard slow-fast systems of the sort discussed in http://dx.doi.org/10.1137/19M1242677
  2. Patch dynamics; recent work has developed an adaptive moving patch scheme. The scheme can simulate moving fine-scale meshes that come together to form shocks at unknown locations in the spatial domain. A project here might focus on extending and applying the moving patch dynamics to travelling wave problems. 

Thanks for coming this far! Please accept a beautiful picture of adaptive moving patches simulating a problem with heterogeneous advection and diffusion terms; the inset shows details of the little black box. 

If you can see this, the figure hasn't loaded.

 

Date Position Institution name
2021 - ongoing Lecturer University of Adelaide
2018 - 2021 Postdoc University of Adelaide
2015 - 2018 Postdoc Univerity of North Carolina at Chapel Hill

Date Institution name Country Title
2011 - 2014 University of Sydney Australia PhD

Year Citation
2025 Xiourouppa, A. H., Mikhin, D., Humphries, M., & Maclean, J. (2025). Theoretical Insights for Bearings-Only Tracking in Log-Polar Coordinates. IEEE Transactions on Aerospace and Electronic Systems, 61(4), 1-12.
DOI Scopus1 WoS1
2025 Blake, L., Maclean, J., & Balasuriya, S. (2025). Rigorous convergence bounds for stochastic differential equations with application to uncertainty quantification. Physica D: Nonlinear Phenomena, 481, 134742-1-134742-19.
DOI
2025 Shorten, D. P., Humphries, M., Maclean, J., Yang, Y., & Roughan, M. (2025). Optimal proposal particle filters for detecting anomalies and manoeuvres from two line element data. Acta Astronautica, 228, 709-723.
DOI WoS1
2024 Morris, D., Maclean, J., & Black, A. J. (2024). Computation of random time-shift distributions for stochastic population models.. Journal of mathematical biology, 89(3), 33.
DOI
2024 Loch, A., Sexton, S., Maclean, J., O’Connor, P., Adamson, D., & Scholz, G. (2024). Increased monetary equity and health wellbeing benefits for marginal urban socioeconomic groups from access to green space. Urban Forestry and Urban Greening, 102, 128576-1-128576-10.
DOI Scopus5 WoS5
2024 Maclean, J., & Van Vleck, E. S. (2024). DECOMPOSITION OF LIKELIHOODS AND TECHNIQUES FOR MULTI-SCALE DATA ASSIMILATION. DISCRETE AND CONTINUOUS DYNAMICAL SYSTEMS-SERIES B, 0(0), 24 pages.
DOI
2024 Shermon, S., Maclean, J., Shim, R., & Kim, C. H. (2024). Neuropsychiatric Side Effects After Lumbosacral Epidural Steroid Injections: A Prospective Cohort Study. PAIN PHYSICIAN, 27(3), 12 pages.
2024 Maclean, J., Remick, S., Shim, W. J., Chakravorty, A., & Kim, C. (2024). Electronic Cigarette (E-Cig) Use in the Chronic Pain Population. PAIN PHYSICIAN, 27(2), 6 pages.
2024 O’loughlin, L., Maclean, J., & Black, A. (2024). Neural Likelihood Approximation for Integer Valued Time Series Data. Transactions on Machine Learning Research, 2024.
2023 Robbins, C., Blyth, M. G., MacLean, J., & Binder, B. J. (2023). A method to calculate inverse solutions for steady open channel free-surface flow. Journal of Fluid Mechanics, 977, 22 pages.
DOI Scopus2 WoS2
2023 O'Loughlin, L., Maclean, J., & Black, A. (2023). Neural Likelihood Approximation for Integer Valued Time Series Data.
2023 Shorten, D. P., Yang, Y., Maclean, J., & Roughan, M. (2023). Wide-Scale Monitoring of Satellite Lifetimes: Pitfalls and a Benchmark Dataset. Journal of Spacecraft and Rockets, 60(6), 1-5.
DOI Scopus5
2022 Albarakati, A., Budišić, M., Crocker, R., Glass-Klaiber, J., Iams, S., Maclean, J., . . . Van Vleck, E. S. (2022). Model and data reduction for data assimilation: Particle filters employing projected forecasts and data with application to a shallow water model. Computers and Mathematics with Applications, 116, 194-211.
DOI Scopus16 WoS13
2022 Maclean, J., Bunder, J. E., Kevrekidis, I. G., & Roberts, A. J. (2022). Adaptively Detect and Accurately Resolve Macro-scale Shocks in an Efficient Equation-Free Multiscale Simulation. SIAM Journal on Scientific Computing, 44(4), A2557-A2581.
DOI Scopus2 WoS2
2022 Johnson, S., Maclean, J., Vozzo, R. F., Koerber, A., & Humphries, M. A. (2022). Don't throw the student out with the bathwater: online assessment strategies your class won't hate. International Journal of Mathematical Education in Science and Technology, 53(3), 1-12.
DOI Scopus3 WoS2
2021 Maclean, J., & Spiller, E. T. (2021). A surrogate-based approach to nonlinear, non-Gaussian joint state-parameter data assimilation. Foundations of Data Science, 3(3), 589-614.
DOI
2021 Maclean, J., Bunder, J. E., Kevrekidis, I. G., & Roberts, A. J. (2021). An Equation Free algorithm accurately simulates macroscale shocks arising from heterogeneous microscale systems. IEEE Journal on Multiscale and Multiphysics Computational Techniques, 6, 8-15.
DOI Scopus3 WoS3
2021 Maclean, J., & Van Vleck, E. S. (2021). Particle filters for data assimilation based on reduced-order data models. Quarterly Journal of the Royal Meteorological Society, 147(736), 1892-1907.
DOI Scopus9 WoS9
2021 Maclean, J., Bunder, J. E., & Roberts, A. J. (2021). A toolbox of equation-free functions in Matlab/Octave for efficient system level simulation. Numerical Algorithms, 87(4), 1729-1748.
DOI Scopus9 WoS7
2020 Maclean, J., Bunder, J. E., Roberts, A. J., & Kevrekidis, I. G. (2020). A multiscale scheme accurately simulates macroscale shocks in an
equation-free framework.
2020 Zhang, H., Lapointe, B. T., Anthony, N., Azevedo, R., Cals, J., Correll, C. C., . . . Barr, K. (2020). Discovery of <i>N</i>-(Indazol-3-yl)piperidine-4-carboxylic Acids as RORγt Allosteric Inhibitors for Autoimmune Diseases. ACS MEDICINAL CHEMISTRY LETTERS, 11(2), 114-119.
DOI WoS20
2017 Maclean, J., Santitissadeekorn, N., & Jones, C. K. (2017). A coherent structure approach for parameter estimation in Lagrangian Data Assimilation. Physica D: Nonlinear Phenomena, 360, 36-45.
DOI Scopus13 WoS12
2015 Maclean, J., & Gottwald, G. (2015). On convergence of higher order schemes for the projective integration method for stiff ordinary differential equations. Journal of Computational and Applied Mathematics, 288, 44-69.
DOI Scopus7 WoS7
2015 Maclean, J. (2015). A note on implementations of the Boosting Algorithm and Heterogeneous Multiscale Methods. SIAM Journal on Numerical Analysis, 53(5), 2472-2487.
DOI Scopus2 WoS2
2015 Bethapudi, S., Ritchie, D., Bongale, S., Gordon, J., MacLean, J., & Mendl, L. (2015). Data analysis and review of radiology services at Glasgow 2014 Commonwealth Games. SKELETAL RADIOLOGY, 44(10), 1477-1483.
DOI WoS8
2014 Maclean, J., & Gottwald, G. (2014). On convergence of the projective integration method for stiff ordinary differential equations. Communications in Mathematical Sciences, 12(2), 235-255.
DOI Scopus4 WoS4

Year Citation
2023 Johnson, S., Maclean, J., Vozzo, R. F., Koerber, A., & Humphries, M. A. (2023). Don't throw the student out with the bathwater: online assessment strategies your class won't hate. In Takeaways from Teaching through a Pandemic (pp. 69-80). Routledge.
DOI
2019 Budhiraja, A., Friedlander, E., Guider, C., Jones, C. K., & Maclean, J. (2019). Assimilating Data into Models. In A. E. Gelfand, M. Fuentes, J. A. Hoeting, & R. L. Smith (Eds.), Handbook of Environmental and Ecological Statistics (1 ed., pp. 687-708). Florida; USA: CRC Press.

Year Citation
2022 Piyevsky, B., Maclean, J., Li, A., Rhodes, S., Prunty, M., Jesse, E., . . . Callegari, M. (2022). IMPACT AND IMPLICATIONS OF THE COVID-19 PANDEMIC ON UROLOGIC TRAINING. In JOURNAL OF UROLOGY Vol. 207 (pp. E513-E514). LIPPINCOTT WILLIAMS & WILKINS.
2017 Pesnot, T., Mahale, S., MacFaul, P., Maclean, J., Phillips, C., Bingham, M., . . . Armer, R. (2017). Development of 2" generation indoleamine 2,3-dioxygenase 1 (IDO1) selective inhibitors. In CANCER RESEARCH Vol. 77 (pp. 2 pages). DC, Washington: AMER ASSOC CANCER RESEARCH.
DOI
2015 Khudoley, A., Chamberlain, K., Ershova, V., Sears, J., Prokopiev, A., MacLean, J., . . . Chipley, D. (2015). Proterozoic supercontinental restorations: Constraints from provenance studies of Mesoproterozoic to Cambrian clastic rocks, eastern Siberian Craton. In PRECAMBRIAN RESEARCH Vol. 259 (pp. 78-94). RUSSIA, Moscow: ELSEVIER.
DOI WoS77
1984 MACLEAN, J., & BECKER, R. (1984). THE IMPACT OF THE INTRODUCTION OF GERIATRIC ASSESSMENT BEDS INTO A LONG-TERM CARE UNIT. In GERONTOLOGIST Vol. 24 (pp. 121). GERONTOLOGICAL SOCIETY AMER.

Year Citation
2022 Loch, A., Sexton, S., Scholz, G., Maclean, J., & O'Connor, P. (2022). Willingness to Pay and Avoided Health Costs associated with Metropolitan Parks. Adelaide, SA: South Australian Department for Environment and Water.

Year Citation
2024 Blake, L., Maclean, J., & Balasuriya, S. (2024). Unifying Lyapunov exponents with probabilistic uncertainty
quantification.
2024 Xiourouppa, A. H., Mikhin, D., Humphries, M., & Maclean, J. (2024). An insightful approach to bearings-only tracking in log-polar
coordinates.
2023 Shorten, D. P., Maclean, J., Humphries, M., Yang, Y., & Roughan, M. (2023). Optimal Proposal Particle Filters for Detecting Anomalies and Manoeuvres
from Two Line Element Data.
2023 Blake, L., Maclean, J., & Balasuriya, S. (2023). The convergence of stochastic differential equations to their
linearisation in small noise limits.

Date Role Research Topic Program Degree Type Student Load Student Name
2025 Co-Supervisor Predicting bottom topography underneath free-surface flow Master of Philosophy Master Full Time Miss Caitlin Lydia Anchor
2025 Co-Supervisor Methods for inference and forecasting in mechanistic models with unresolved processes Doctor of Philosophy Doctorate Full Time Mr Liam Andrew Alex Blake
2025 Co-Supervisor A Stochastic Framework for Quantifying and Reducing Uncertainty in Crop Model Predictions through Bayesian Inference and Model Error Diagnosis Doctor of Philosophy Doctorate Full Time Mr Haochi Wang
2024 Principal Supervisor Scalable algorithms for non-linear target tracking Doctor of Philosophy Doctorate Full Time Miss Athena Helena Xiourouppa
2023 Co-Supervisor Predicting Clinical Need During Dispatch to Guide Ambulance Response Doctor of Philosophy Doctorate Part Time Mr Trevor Paul Matthews
2021 Co-Supervisor Modelling and Quantification of Food Deserts Doctor of Philosophy under a Jointly-awarded Degree Agreement with Doctorate Part Time Miss Tayla Paige Broadbridge

Date Role Research Topic Program Degree Type Student Load Student Name
2023 - 2025 Co-Supervisor Geolocation with Latent Variable Models Master of Philosophy Master Full Time Miss Vivienne Mei-Larn Niejalke
2022 - 2024 Co-Supervisor Computable Characterisations of Uncertainty in Differential Equations Master of Philosophy Master Full Time Mr Liam Andrew Alex Blake
2022 - 2024 Co-Supervisor An Analysis of Bias in Australian Television Media Master of Philosophy Master Full Time Miss Irulan Claire Prowse Murphy
2022 - 2023 Co-Supervisor Likelihood-Free Inference for Discrete Time Series Data Using Machine Learning Master of Philosophy Master Full Time Mr Luke Phillip O'Loughlin
2021 - 2023 Co-Supervisor A Modelling Framework for Estimating the Risk of Importation of a Novel Disease Master of Philosophy Master Full Time Mr Antonio Max Parrella
2019 - 2021 Co-Supervisor Lagrangian Coherent Data Assimilation for Chaotic Geophysical Systems Master of Philosophy Master Full Time Ms Rose Joy Crocker

Date Title Engagement Type Institution Country
2021 - 2021 Colloquium Organiser Scientific Community Engagement University of Adelaide -
2021 - ongoing Outreach Committee Scientific Community Engagement University of Adelaide -

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