Professor David Adelson

Professor

School of Biological Sciences

Faculty of Sciences, Engineering and Technology

Eligible to supervise Masters and PhD - email supervisor to discuss availability.

David Adelson is Professor and Chair of Bioinformatics and Computational Genetics, Zhendong Chair of Molecular Traditional Chinese Medicine in the School of Biological Sciences at the University of Adelaide and previously was a Xinglin Scholar Professor at Guangzhou University of TCM. Prof. Adelson’s current research also focuses on the non-coding portions of animal genomes, such as regions used to transcribe ncRNAs (piRNAs and lncRNAs) and the computational analysis of repetitive, so called “Junk DNA”, in order to understand large scale evolutionary/structural changes in animal genomes. Prof. Adelson has led the analysis of repetitive DNA for the cow, horse and elephant genome sequencing consortia and his lab has recently finished working on the Tuatara repetitive DNA analysis for that international genome sequencing consortium. In addition to characterising repeat content in genomes, his lab continues to develop a set of tools to identify and annotate transposable elements and segmental duplications “from scratch” and to use long read sequencing technology to identify somatic structural variants.. Additional aspects of the genome evolution work include understanding the impact of horizontal transfer of repetitive elements in higher organisms.

Prof. Adelson is currently Director of the Zhendong Centre of Molecular Traditional Chinese Medicine. The philosophy of the Zhendong Centre is that complex molecular effects of TCM preparations will provide a molecular basis for understanding the mode of action of TCM and support integration into Western medicine. A major approach to this work uses transcriptome analysis to identify entire pathways or co-expression sub-networks in cancer cells that are altered as a result of a particular TCM preparation, Compound Kushen Injection.

Prof. Adelson was also Co-Director (with Prof Gary Glonek) of the Bioinformatics Hub, a core facility for bioinformatics training and analysis that serves the research community of The University of Adelaide from 2014 to 2020.

Prior to moving to Adelaide in 2007, Prof Adelson worked at Texas A&M University from 2001, and before that worked for CSIRO from 1988. Prof Adelson obtained his PhD in Biomedical Sciences (Biochemistry), from the John A Burns School of Medicine at the University of Hawaii at Manoa in 1985 and carried out postdoctoral research at Duke University.

My Research
Career
Publications
Grants and Funding
Teaching
Supervision
Professional Activities
Contact

My research has two main themes: 1)understanding how transposable elements affect genome structure and function at both the individual and species level and 2)using systems biology and network based methods to understand the molecular mode of action of complex mixtures of bioactives such as Traditional Chinese Medicines.

Adelson Lab

Appointments

Date Position Institution name
2012 - 2021 Board Member South Australian Museum
Language Competencies

Language Competency
French Can read, write and speak
Spanish - Latin American Can read, write and speak
Education

Date Institution name Country Title
University of Hawaii at Manoa - John A Burns School of Medicine USA PhD
Postgraduate Training

Date Title Institution Country
Postdoctoral researcher Duke University United States
Research Interests

Bioinformatics Bioinformatics Software Evolutionary Biology Gene Expression Genetics Genome Structure and Regulation Genomics Medicinal and Biomolecular Chemistry Traditional Chinese Medicine and Treatments

Date	Position	Institution name
2012 - 2021	Board Member	South Australian Museum

Language	Competency
French	Can read, write and speak
Spanish - Latin American	Can read, write and speak

Date	Institution name	Country	Title
	University of Hawaii at Manoa - John A Burns School of Medicine	USA	PhD

Date	Title	Institution	Country
	Postdoctoral researcher	Duke University	United States

Journals

Year	Citation
2023	Baer, L., Barthelson, K., Postlethwait, J., Adelson, D., Pederson, S., & Lardelli, M. (2023). Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis. bioRxiv. DOI
2023	Qu, Z., Wang, W., & Adelson, D. (2023). The genome of medicinal plant<i>Sophora flavescens</i>has undergone significant expansion of both transposons and genes. DOI
2022	Jarred, E. G., Qu, Z., Tsai, T., Oberin, R., Petautschnig, S., Bildsoe, H., . . . Western, P. S. (2022). Transient Polycomb activity represses developmental genes in growing oocytes. Clinical Epigenetics, 14(1), 18 pages. DOI
2022	Wainwright, C. L., Teixeira, M. M., Adelson, D. L., Buenz, E. J., David, B., Glaser, K. B., . . . Wolfender, J. -L. (2022). Future Directions for the Discovery of Natural Product-Derived Immunomodulating Drugs.. Pharmacological research, 177, 40 pages. DOI Scopus12 WoS11 Europe PMC4
2022	Galbraith, J. D., Ludington, A. J., Sanders, K. L., Amos, T. G., Thomson, V. A., Enosi Tuipulotu, D., . . . Adelson, D. L. (2022). Horizontal Transposon Transfer and Its Implications for the Ancestral Ecology of Hydrophiine Snakes. Genes, 13(2), 217. DOI
2022	Wainwright, C. L., Teixeira, M. M., Adelson, D. L., Buenz, E. J., David, B., Glaser, K. B., . . . Wolfender, J. -L. (2022). Corrigendum to "Future directions for the discovery of natural product-derived immunomodulating drugs: An IUPHAR positional review" [Pharmacol. Res. 177 (2022) 106076].. Pharmacological research, 180, 106207. DOI WoS1
2022	Li, K., Yan, F., Duan, Z., Adelson, D., & Wei, C. (2022). Widespread of horizontal gene transfer events in eukaryotes. DOI
2022	Harata-Lee, Y., Qu, Z., Bateman, E., Xiao, X., Keller, M. D., Bowen, J., . . . Adelson, D. L. (2022). Compound Kushen injection reduces severity of radiation-induced gastrointestinal mucositis in rats. Frontiers in Oncology, 12, 11 pages. DOI
2022	Hassan, N., & Adelson, D. (2022). Fake IDs? Widespread misannotation of DNA Transposons as a General Transcription Factor. DOI
2021	Tang, Y., Qu, Z., Lei, J., He, R., Adelson, D. L., Zhu, Y., . . . Wang, D. (2021). The long noncoding RNA FRILAIR regulates strawberry fruit ripening by functioning as a noncanonical target mimic.. PLoS Genet, 17(3), 1-23. DOI Scopus19 WoS21 Europe PMC11
2021	Galbraith, J. D., Kortschak, R. D., Suh, A., & Adelson, D. L. (2021). Genome stability is in the eye of the beholder: recent retrotransposon activity varies significantly across avian diversity. biorxiv. DOI
2021	Galbraith, J. D., Ludington, A. J., Sanders, K. L., Suh, A., & Adelson, D. L. (2021). Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (Laticauda). Biology Letters. DOI
2021	Galbraith, J., Ludington, A., Edwards, R., Sanders, K., Suh, A., & Adelson, D. (2021). Horizontal transfer and southern migration: the tale of Hydrophiinae’s marine journey. DOI
2021	Galbraith, J. D., Ludington, A. J., Sanders, K. L., Suh, A., & Adelson, D. L. (2021). Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (<i>Laticauda</i>).. Biology letters, 17(9), 7 pages. DOI Scopus4 WoS3 Europe PMC4
2021	Galbraith, J. D., Kortschak, R. D., Suh, A., & Adelson, D. L. (2021). Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity. Genome Biology and Evolution, 13(12), 1-14. DOI Scopus2 WoS3 Europe PMC2
2020	Cui, J., Qu, Z., Harata-Lee, Y., Shen, H., Aung, T. N., Wang, W., . . . Adelson, D. L. (2020). The effect of compound kushen injection on cancer cells: Integrated identification of candidate molecular mechanisms. PLoS One, 15(7), 1-18. DOI Scopus12 WoS10 Europe PMC8
2020	Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., . . . Edmonds, H. (2020). The tuatara genome reveals ancient features of amniote evolution. Nature, 584(7821), 403-409. DOI Scopus69 WoS67 Europe PMC36
2020	Gemmell, N., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J., . . . Edmonds, H. (2020). Publisher Correction: The tuatara genome reveals ancient features of amniote evolution (Nature, (2020), 584, 7821, (403-409), 10.1038/s41586-020-2561-9). Nature, 585(7823), E3. DOI
2020	Galbraith, J. D., Ludington, A. J., Suh, A., Sanders, K. L., & Adelson, D. L. (2020). New environment, new invaders—repeated horizontal transfer of LINEs to sea snakes. Genome Biology and Evolution, 12(12), 2370-2383. DOI Scopus8 WoS7 Europe PMC7
2020	Hin, N., Newman, M., Kaslin, J., Douek, A. M., Lumsden, A., Moussavi Nik, S. H., . . . Lardelli, M. (2020). Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2. PloS one, 15(1), e0227258. DOI Scopus16 WoS17 Europe PMC14
2020	Zhang, J., Sun, L., Cui, J., Wang, J., Liu, X., Aung, T. N., . . . Lin, L. (2020). Yiqi Chutan Tang Reduces Gefitinib-Induced Drug Resistance in Non-Small-Cell Lung Cancer by Targeting Apoptosis and Autophagy. Cytometry Part A, 97(1), 70-77. DOI Scopus10 WoS9 Europe PMC8
2019	Aung, T. N., Nourmohammadi, S., Qu, Z., Harata-Lee, Y., Cui, J., Shen, H. Y., . . . Adelson, D. L. (2019). Fractional deletion of Compound Kushen Injection indicates cytokine signaling pathways are critical for its perturbation of the cell cycle. Scientific Reports, 9(1), 14200-1-14200-16. DOI Scopus9 WoS6 Europe PMC6
2019	Shen, H., Qu, Z., Harata-Lee, Y., Cui, J., Aung, T. N., Wang, W., . . . Adelson, D. L. (2019). A new strategy for identifying mechanisms of drug-drug interaction using transcriptome analysis: Compound Kushen Injection as a proof of principle. Scientific Reports, 9(1), 15889-1-15889-12. DOI Scopus4 WoS4
2019	Gemmell, N., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, R., . . . Board, N. T. (2019). The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order. DOI
2019	Nourmohammadi, S., Aung, T. N., Cui, J., Pei, J., De Ieso, M. L., Harata-Lee, Y., . . . Yool, A. J. (2019). Effect of compound kushen injection, a natural compound mixture, and its identified chemical components on migration and invasion of colon, brain, and breast cancer cell lines. Frontiers in Oncology, 9(APR), 1-14. DOI Scopus36 WoS36 Europe PMC26
2019	Zhang, J., Qu, Z., Yao, H., Sun, L., Harata-Lee, Y., Cui, J., . . . Lin, L. (2019). An effective drug sensitizing agent increases gefitinib treatment by down regulating PI3K/Akt/mTOR pathway and up regulating autophagy in non-small cell lung cancer. Biomedicine and Pharmacotherapy, 118, 109169-1-109169-10. DOI Scopus21 WoS19 Europe PMC17
2019	Shen, H., Qu, Z., Harata-Lee, Y., Aung, T. N., Cui, J., Wang, W., . . . Adelson, D. L. (2019). Understanding the mechanistic contribution of herbal extracts in compound Kushen injection with transcriptome analysis. Frontiers in Oncology, 9(JULY), 632-1-632-11. DOI Scopus15 WoS14 Europe PMC7
2019	Cui, J., Qu, Z., Harata-Lee, Y., Nwe Aung, T., Shen, H., Wang, W., & Adelson, D. L. (2019). Cell cycle, energy metabolism and DNA repair pathways in cancer cells are suppressed by Compound Kushen Injection. BMC Cancer, 19(1), 10 pages. DOI Scopus29 WoS27 Europe PMC18
2019	Ren, H., Zhao, J., Fan, D., Wang, Z., Zhao, T., Li, Y., . . . Hao, H. (2019). Alkaloids from nux vomica suppresses colon cancer cell growth through Wnt/β-catenin signaling pathway. Phytotherapy Research, 33(5), 1570-1578. DOI Scopus16 WoS15 Europe PMC7
2019	Shen, H., Qu, Z., Harata-Lee, Y., Cui, J., Aung, T. N., Wang, W., . . . Adelson, D. (2019). A new strategy for identifying mechanisms of drug-drug interaction using transcriptome analysis: Compound Kushen injection as a proof of principle. DOI
2018	Cui, J., Qu, Z., Harata-Lee, Y., Shen, H., Nwe Aung, T., Wang, W., . . . Adelson, D. (2018). The Effect of Compound Kushen Injection on Cancer Cells: Integrated Identification of Candidate Molecular Mechanisms. DOI
2018	Nourmohammadi, S., Aung, T. N., Cui, J., Pei, J., De Ieso, M. L., Harata-Lee, Y., . . . Yool, A. (2018). Effect of Compound Kushen Injection, a natural compound mixture, and its identified chemical components on migration and invasion of colon, brain and breast cancer cell lines. DOI Europe PMC1
2018	Zeng, L., Pederson, S., Kortschak, D., & Adelson, D. (2018). Transposable elements and gene expression during the evolution of amniotes. DOI
2018	Stringer, J., Forster, S., Qu, Z., Prokopuk, L., O'Bryan, M., Gardner, D., . . . Western, P. (2018). Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance. BMC Biology, 16(1), 104. DOI Scopus13 WoS11 Europe PMC9
2018	Aung, T. N., Nourmohammadi, S., Qu, Z., Harata-Lee, Y., Cui, J., Shen, H. Y., . . . Adelson, D. L. (2018). Fractional Deletion Of Compound Kushen Injection, A Natural Compound Mixture, Indicates Cytokine Signaling Pathways Are Critical For Its Perturbation Of The Cell Cycle. DOI Europe PMC1
2018	Alanazi, I., Ebrahimie, E., Hoffmann, P., & Adelson, D. (2018). Correction to: Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis (Apoptosis, (2013), 18, 11, (1291-1305), 10.1007/s10495-013-0887-6). Apoptosis, 23(1), 92. DOI Scopus1 WoS1
2018	Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., . . . Reich, D. (2018). A comprehensive genomic history of extinct and living elephants. Proceedings of the National Academy of Sciences of the United States of America, 115(11), 2566-2574. DOI Scopus91 WoS83 Europe PMC44
2018	Zeng, L., Kortschak, R., Raison, J., Bertozzi, T., & Adelson, D. (2018). Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies. PLoS ONE, 13(3), 1-17. DOI Scopus14 WoS13 Europe PMC12
2018	Buckley, R. M., Kortschak, R. D., & Adelson, D. L. (2018). Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.. PLoS computational biology, 14(4), e1006091. DOI Scopus1 Europe PMC1
2018	Zeng, L., Pederson, S., Cao, D., Qu, Z., Hu, Z., Adelson, D., & Wei, C. (2018). Genome-Wide Analysis of the Association of Transposable Elements with Gene Regulation Suggests that Alu Elements Have the Largest Overall Regulatory Impact. Journal of Computational Biology, 25(6), 1-12. DOI Scopus10 WoS9 Europe PMC6
2018	Hin, N., Newman, M., Kaslin, J., Douek, A. M., Lumsden, A., Zhou, X., . . . Lardelli, M. (2018). Accelerated brain aging towards transcriptional inversion in a zebrafish model of familial Alzheimer's disease. BioRxiv, OnlinePubl. DOI
2018	Mills, P., Adelson, D., & Yu, I. (2018). Chinese herbal medicine versus other interventions in the treatment of type 2 diabetes: A systematic review of randomized controlled trial.. Journal of Evidence-Based Medicine, 23, 1-10. DOI Scopus8 Europe PMC2
2018	Zeng, L., Pederson, S., Kortschak, R., & Adelson, D. (2018). Transposable elements and gene expression during the evolution of amniotes. Mobile DNA, 9(1), 17-1-17-9. DOI Scopus14 WoS15 Europe PMC8
2018	Ivancevic, A., Kortschak, R., Bertozzi, T., & Adelson, D. (2018). Horizontal transfer of BovB and L1 retrotransposons in eukaryotes. Genome Biology, 19(1), 13 pages. DOI Scopus53 WoS49 Europe PMC34
2018	Liang, Q., Qu, Z., Liang, Y., Feng, Q., Niu, X., Bai, T., . . . Adelson, D. (2018). Zuo gui wan alters expression of energy metabolism genes and prevents cell death in high-glucose loaded mouse embryos. Evidence-based Complementary and Alternative Medicine, 2018, 2409471-1-2409471-11. DOI Scopus5 WoS3 Europe PMC2
2018	Banjar, H., Adelson, D., Brown, F., & Chaudhri, N. (2018). Corrigendum: Intelligent techniques using molecular data analysis in leukaemia: An opportunity for personalized medicine support system (BioMed Research International (2017) 2017 (12) DOI: 10.1155/2017/3587309). BioMed Research International, 2018, 1 page. DOI
2017	Ivancevic, A., Daniel Kortschak, R., Bertozzi, T., & Adelson, D. (2017). Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species. DOI
2017	Banjar, H., Adelson, D., Brown, F., & Leclercq, T. (2017). Personalized medicine support system : resolving conflict in allocation to risk groups and predicting patient molecular response to targeted therapy. Health Informatics - An International Journal, 6(2), 1-21. DOI
2017	Banjar, H., Adelson, D., Brown, A., & Chaudhri, N. (2017). Intelligent techniques using molecular data analysis in leukaemia: an opportunity for personalized medicine support system. BioMed Research International, 2017, 3587309-1-3587309-21. DOI Scopus9 WoS9 Europe PMC5
2017	Daniel Kortschak, R., & L Adelson, D. (2017). bíogo/ncbi: interfaces to NCBI services for the Go language. The Journal of Open Source Software, 2(13), 234. DOI
2017	Yu, C., Qu, Z., Zhang, Y., Zhang, X., Lan, T., Adelson, D. L., . . . Zhu, Y. (2017). Seed weight differences between wild and domesticated soybeans are associated with specific changes in gene expression. Plant Cell Reports, 36(9), 1417-1426. DOI Scopus8 WoS8 Europe PMC5
2017	Hempfling, A., Lim, S., Adelson, D., Evans, J., O Connor, A., Qu, Z., . . . Bergmann, M. (2017). Expression patterns of HENMT1 and PIWIL1 in human testis: implications for transposon expression. Reproduction, 154(4), 363-374. DOI Scopus20 WoS20 Europe PMC17
2017	Li, J., Harata-Lee, Y., Denton, M., Feng, Q., Rathjen, J., Qu, Z., & Adelson, D. (2017). Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis. Cell Discovery, 3(1), 17031-1-17031-13. DOI Scopus68 WoS71 Europe PMC48
2017	Buckley, R., Kortschak, R., Raison, J., & Adelson, D. (2017). Similar evolutionary trajectories for retrotransposon accumulation in mammals. Genome Biology and Evolution, 9(9), 2336-2353. DOI Scopus14 WoS14 Europe PMC11
2017	Banjar, H., Ranasinghe, D., Brown, F., Adelson, D., Kroger, T., Leclercq, T., . . . Chaudhri, N. (2017). Modelling predictors of molecular response to frontline imatinib for patients with chronic myeloid leukaemia. PLoS ONE, 12(1), 1-23. DOI Scopus3 WoS3 Europe PMC2
2017	Wang, D., Qu, Z., Yang, L., Zhang, Q., Liu, Z., Do, T., . . . Zhu, J. (2017). Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants. Plant Journal, 90(1), 133-146. DOI Scopus94 WoS89 Europe PMC51
2017	Fruzangohar, M., Ebrahimie, E., & Adelson, D. (2017). A novel hypothesis-unbiased method for gene ontology enrichment based on transcriptome data. PLoS ONE, 12(2), e0170486-1-e0170486-14. DOI Scopus17 WoS13 Europe PMC13
2017	Aung, T., Qu, Z., Kortschak, R., & Adelson, D. (2017). Understanding the effectiveness of natural compound mixtures in cancer through their molecular mode of action. International Journal of Molecular Sciences, 18(3), 20 pages. DOI Scopus194 WoS182 Europe PMC93
2017	Kortschak, R., Pedersen, B., & Adelson, D. (2017). bíogo/hts: high throughput sequence handling for the Go language. The Journal of Open Source Software, 2(10), 168-1. DOI
2017	Kortschak, R., Snyder, J., Maragkakis, M., & Adelson, D. (2017). bíogo: a simple high-performance bioinformatics toolkit for the Go language. The Journal of Open Source Software, 2(10), 1. DOI
2016	Ling, K., Brautigan, P., Moore, S., Fraser, R., Cheah, P., Raison, J., . . . Scott, H. (2016). Derivation of an endogenous small RNA from double-stranded Sox4 sense and natural antisense transcripts in the mouse brain. Genomics, 107(2-3), 88-99. DOI Scopus14 WoS12 Europe PMC9
2016	Ling, K., Brautigan, P., Moore, S., Fraser, R., Leong, M., Leong, J., . . . Scott, H. (2016). In depth analysis of the Sox4 gene locus that consists of sense and natural antisense transcripts. Data in Brief, 7, 282-290. DOI Scopus4 Europe PMC2
2016	Qu, Z., Cui, J., Harata-Lee, Y., Thazin Nwe Aung, T., Feng, Q., Raison, J., . . . Adelson, D. (2016). Identification of candidate anti-cancer molecular mechanisms of compound kushen injection using functional genomics. Oncotarget, 7(40), 66003-66019. DOI Scopus59 WoS51 Europe PMC31
2016	Ivancevic, A., Kortschak, R., Bertozzi, T., & Adelson, D. (2016). LINEs between species: evolutionary dynamics of LINE-1 retrotransposons across the eukaryotic tree of life. Genome Biology and Evolution, 8(11), 3301-3322. DOI Scopus42 WoS40 Europe PMC34
2015	Lim, S. L., Qu, Z. P., Kortschak, R. D., Lawrence, D. M., Geoghegan, J., Hempfling, A. -L., . . . O'Bryan, M. K. (2015). Correction: HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse.. PLoS genetics, 11(12), e1005782. DOI Europe PMC3
2015	McMichael, G., Bainbridge, M., Haan, E., Corbett, M., Gardner, A., Thompson, S., . . . MacLennan, A. (2015). Whole-exome sequencing points to considerable genetic heterogeneity of cerebral palsy. Molecular Psychiatry, 20(2), 176-182. DOI Scopus137 WoS118 Europe PMC89
2015	Alanazi, I., Hoffmann, P., & Adelson, D. (2015). MicroRNAs are part of the regulatory network that controls EGF induced apoptosis, including elements of the JAK/STAT pathway, in A431 cells. PLoS One, 10(3), e0120337-1-e0120337-20. DOI Scopus17 WoS17 Europe PMC15
2015	Fruzangohar, M., Ebrahimie, E., Ogunniyi, A. D., Mahdi, L. K., Paton, J. C., & Adelson, D. L. (2015). Correction: Comparative GO: A web application for comparative gene ontology and gene ontology-based gene selection in bacteria. PLoS ONE, 10(4), 1 page. DOI Scopus6 WoS4 Europe PMC3
2015	Hu, Z., Scott, H., Qin, G., Zheng, G., Chu, X., Xie, L., . . . Wei, C. (2015). Revealing missing human protein isoforms based on ab initio prediction, RNA-seq and proteomics. Scientific Reports, 5(1), 10940-1-10940-15. DOI Scopus30 WoS25 Europe PMC17
2015	Lim, S., Qu, Z., Kortschak, R., Lawrence, D., Geoghegan, J., Hempfling, A., . . . O'Bryan, M. (2015). HENMT1 and piRNA stability are required for adult male germ cell transposon repression and to define the spermatogenic program in the mouse. PLoS Genetics, 11(10), e1005620-1-e1005620-30. DOI Scopus82 WoS75 Europe PMC56
2014	Gagliardi, L., Schreiber, A., Hahn, C., Feng, J., Cranston, T., Boon, H., . . . Scott, H. (2014). ARMC5 mutations are common in familial bilateral macronodular adrenal hyperplasia. Journal of Clinical Endocrinology and Metabolism, 99(9), E1784-E1792. DOI Scopus88 WoS69 Europe PMC53
2014	Wang, D., Qu, Z., Adelson, D., Zhu, J., & Timmis, J. (2014). Transcription of nuclear organellar DNA in a model plant system. Genome Biology and Evolution, 6(6), 1327-1334. DOI Scopus14 WoS14 Europe PMC10
2014	Buckley, R., & Adelson, D. (2014). Mammalian genome evolution as a result of epigenetic regulation of transposable elements. Biomolecular Concepts, 5(3), 183-194. DOI Scopus9 Europe PMC5
2014	Jiang, Y., Xie, M., Chen, W., Talbot, R., Maddox, J., Faraut, T., . . . Dalrymple, B. (2014). The sheep genome illuminates biology of the rumen and lipid metabolism. Science, 344(6188), 1168-1173. DOI Scopus303 WoS289 Europe PMC240
2014	Ebrahimi, M., Aghagolzadeh, P., Shamabadi, N., Tahmasebi, A., Alsharifi, M., Adelson, D., . . . Ebrahimie, E. (2014). Understanding the undelaying mechanism of HASubtyping in the level of physic-chemal characteristics of protein. PLoS One, 9(5), e96984-1-e96984-14. DOI Scopus21 WoS17 Europe PMC11
2014	Lim, S., Kortschak, R., & Adelson, D. (2014). Discovery of a novel long terminal repeat (LTR2i-SS) in Sus Scrofa. Animal Genetics, 45(3), 367-372. DOI
2014	Mahdi, L., Deihimi, T., Zamansani, F., Fruzangohar, M., Adelson, D., Paton, J., . . . Ebrahimie, E. (2014). A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease. BMC Genomics, 15(1), 769-1-769-15. DOI Scopus16 WoS14 Europe PMC14
2014	Ghosh, S., Qu, Z., Das, P., Fang, E., Juras, R., Cothran, E., . . . Raudsepp, T. (2014). Copy number variation in the horse genome. PLoS Genetics, 10(10), e1004712-1-e1004712-19. DOI Scopus52 WoS51 Europe PMC43
2013	Ivancevic, A., Walsh, A., Kortschak, R., & Adelson, D. (2013). Jumping the fine LINE between species: Horizontal transfer of transposable elements in animals catalyses genome evolution. Bioessays, 35(12), 1071-1082. DOI Scopus38 WoS34 Europe PMC28
2013	Bellone, R., Holl, H., Sealuri, V., Devi, S., Maddodi, N., Archer, S., . . . Brooks, S. (2013). Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse. PLoS One, 8(10), 1-14. DOI Scopus83 WoS76 Europe PMC47
2013	Alanazi, I., Ebrahimie, E., Hoffmann, P., & Adelson, D. (2013). Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis. Apoptosis, 18(11), 1291-1305. DOI Scopus22 WoS19 Europe PMC14
2013	Fruzangohar, M., Kroeger, T., & Adelson, D. (2013). Improved part-of-speech prediction in suffix analysis. PLoS One, 8(10), 1-6. DOI Scopus7 WoS6 Europe PMC1
2013	Mahdi, L., Ebrahimie, E., Adelson, D., Paton, J., & Ogunniyi, A. (2013). A transcription factor contributes to pathogenesis and virulence in streptococcus pneumoniae. PLoS One, 8(8), 1-9. DOI Scopus14 WoS13 Europe PMC11
2013	Roberts, N., Kortschak, R., Parker, W., Schreiber, A., Branford, S., Scott, H., . . . Adelson, D. (2013). A comparative analysis of algorithms for somatic SNV detection in cancer. Bioinformatics, 29(18), 2223-2230. DOI Scopus69 WoS67 Europe PMC57
2013	Fruzangohar, M., Ebrahimie, E., Ogunniyi, A., Mahdi, L., Paton, J., & Adelson, D. (2013). Comparative GO: a web application for comparative Gene Ontology and Gene Ontology-based gene selection in bacteria. PLoS One, 8(3), 1-8. DOI Scopus53 WoS51 Europe PMC40
2013	Walsh, A., Kortschak, R., Gardner, M., Bertozzi, T., & Adelson, D. (2013). Widespread horizontal transfer of retrotransposons. Proceedings of the National Academy of Sciences of the United States of America, 110(3), 1012-1016. DOI Scopus96 WoS92 Europe PMC72
2012	Qu, Z., & Adelson, D. (2012). Identification and comparative analysis of ncRNAs in human, mouse and zebrafish indicate a conserved role in regulation of genes expressed in brain. PLoS One, 7(12), 1-14. DOI Scopus29 WoS21 Europe PMC20
2012	Qu, Z., & Adelson, D. (2012). Bovine ncRNAs are abundant, primarily intergenic, conserved and associated with regulatory genes. PLoS One, 7(8), 1-14. DOI Scopus41 WoS28 Europe PMC33
2012	Qu, Z., & Adelson, D. (2012). Evolutionary conservation and functional roles of ncRNA. Frontiers in Genetics, 3(205), 1-11. DOI Scopus56 Europe PMC42
2011	Vidale, P., Piras, F., Nergadze, S., Bertoni, L., Verini-Supplizi, A., Adelson, D., . . . Giulotto, E. (2011). Chromosomal assignment of six genes (EIF4G3, HSP90, RBBP6, IL8, TERT, and TERC) in four species of the genus Equus. Animal Biotechnology, 22(3), 119-123. DOI Scopus4 WoS3 Europe PMC3
2011	Ling, K., Brautigan, P., Hahn, C., Daish, T., Rayner, J., Cheah, P., . . . Scott, H. (2011). Deep sequencing analysis of the developing mouse brain reveals a novel microRNA. BMC Genomics, 12(1), 1-15. DOI Scopus50 WoS44 Europe PMC34
2011	Appels, R., Adelson, D., Moolhiujzen, P., Webster, H., Barrero, R., & Bellgard, M. (2011). Genome studies at the PAG 2011 conference. Functional & Integrative Genomics, 11(1), 1-11. DOI Scopus2 WoS2 Europe PMC5
2011	Childers, C., Reese, J., Sundaram, J., Vile, D., Dickens, C., Childs, K., . . . Elsik, C. (2011). Bovine Genome Database: Integrated tools for genome annotation and discovery. Nucleic Acids Research, 39(SUPPL. 1), D830-D834. DOI Scopus26 WoS26 Europe PMC17
2010	Adelson, D., Raison, J., Garber, M., & Edgar, R. (2010). Interspersed repeats in the horse (Equus caballus); spatial correlations highlight conserved chromosomal domains. Animal Genetics, 41(Suppl 2), 91-99. DOI Scopus15 WoS12 Europe PMC10
2010	Rios, J., Fleming, J., Bryant, U., Carter, C., Huber, J., Long, M., . . . Adelson, D. (2010). OAS1 polymorphisms are associated with susceptibility to West Nile encephalitis in horses. PLoS One, 5(5), 1-9. DOI Scopus37 WoS37 Europe PMC25
2009	Bovine Genome Sequencing and Analysis Consortium., Elsik, C., Tellam, R., & Worley, K. (2009). The genome sequence of Taurine cattle: a window to ruminant biology and evolution. Science, 324(5926), 522-528. DOI Scopus906 WoS870 Europe PMC641
2009	Wade, C., Giulotto, E., Sigurdsson, S., Zoli, M., Gnerre, S., Imsland, F., . . . Guerin, G. (2009). Genome sequence, comparative analysis, and population genetics of the domestic horse. Science, 326(5954), 865-867. DOI Scopus580 WoS545 Europe PMC425
2009	Satterfield, M., Song, G., Kochan, K., Riggs, P., Simmons, R., Elsik, C., . . . Spencer, T. (2009). Discovery of candidate genes and pathways in the endometrium regulating ovine blastocyst growth and conceptus elongation. Physiological Genomics, 39(2), 85-99. DOI Scopus70 WoS67 Europe PMC57
2009	Adelson, D., Raison, J., & Edgar, R. (2009). Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome. Proceedings of the National Academy of Sciences of the United States of America, 106(31), 12855-12860. DOI Scopus78 WoS74 Europe PMC57
2009	Salih, H., & Adelson, D. (2009). QTL global meta-analysis: are trait determining genes clustered?. BMC Genomics, 10(1), 1-8. DOI Scopus23 WoS20 Europe PMC15
2008	Adelson, D. (2008). Insights and applications from sequencing the bovine genome. Reproduction Fertility and Development, 20(1), 54-60. DOI Scopus5 WoS3 Europe PMC4
2007	Rios, J., Perelygin, A., Long, M., Lear, T., Zharkikh, A., Brinton, M., & Adelson, D. (2007). Characterization of the equine 2'-5' oligoadenylate synthetase 1 (OAS1) and ribonuclease L (RNASEL) innate immunity genes. BMC Genomics, 8(313), WWW 1-WWW 14. DOI Scopus15 WoS15 Europe PMC8
2007	Brooks, S., Lear, T., Adelson, D., & Bailey, E. (2007). A chromosome inversion near the KIT gene and the Tobiano spotting pattern in horses. Cytogenetic and Genome Research, 119(3-4), 225-230. DOI Scopus78 WoS72 Europe PMC45
2007	Murphy, B., Lear, T., Adelson, D., & Fitzgerald, B. (2007). Chromosomal assignments and sequences for the equine core circadian clock genes. Animal Genetics, 38(1), 84-85. DOI Scopus8 WoS6 Europe PMC3
2007	Snelling, W., Chiu, R., Schein, J., Hobbs, M., Abbey, C., Adelson, D., . . . Zhao, S. (2007). A physical map of the bovine genome. Genome Biology, 8(8), 1-17. DOI Scopus72 WoS61 Europe PMC47
2007	Seabury, C., Gill, C., Templeton, J., Dyar, J., Derr, J., Adelson, D., . . . Womack, J. (2007). Molecular characterization of the Rocky Mountain elk (Cervus elaphus nelsoni) PRNP putative promoter. Journal of Heredity, 98(7), 678-686. DOI Scopus4 WoS3 Europe PMC3
2007	Lewis, S., Farmer, J., Burghardt, R., Newton, G., Johnson, G., Adelson, D., . . . Spencer, T. (2007). Galectin 15 (LGALS15): A gene uniquely expressed in the uteri of sheep and goats that functions in trophoblast attachment. Biology of Reproduction, 77(6), 1027-1036. DOI Scopus46 WoS46 Europe PMC32
2006	Gray, C., Abbey, C., Beremand, P., Choi, Y., Farmer, J., Adelson, D., . . . Spencer, T. (2006). Identification of endometrial genes regulated by early pregnancy progesterone and interferon tau in the ovine uterus. Biology of Reproduction, 74(2), 383-394. DOI Scopus149 WoS141 Europe PMC106
2006	Nergadze, S., Magnani, E., Attolini, C., Bertoni, L., Adelson, D., Cappelli, K., . . . Giulotto, E. (2006). Assignment of the Equus caballus interleukin 8 gene (IL8) to chromosome 3q14.2→q14.3 by in situ hybridization. Cytogenetic and Genome Research, 112(3-4), 341B.1-341B.2. DOI Scopus5 WoS4 Europe PMC3
2006	Bellone, R., Lear, T., Adelson, D., & Bailey, E. (2006). Comparative mapping of oculocutaneous albinism type II (OCA2) transient receptor potential cation channel subfamily M member 1 (TRPM1) and two equine microsatellites ASBO8 and 1CA43 among four equid species by fluorescence in situ hybridization. Cytogenetic and Genome Research, 114(1), 93A1-93A3. DOI Scopus12 WoS8 Europe PMC7
2006	Polineni, P., Aragonda, A., Xavier, S., Furuta, R., & Adelson, D. (2006). The bovine QTL viewer: A web accessible database of bovine Quantitative Trait Loci. BMC Bioinformatics, 7(5), 7 pages. DOI Scopus36 WoS35 Europe PMC27
2006	Wunderlich, K., Abbey, C., Clayton, D., Song, Y., Schein, J., Georges, M., . . . Gill, C. (2006). A 2.5-Mb contig constructed from Angus Longhorn and horned Hereford DNA spanning the polled interval on bovine chromosome 1. Animal Genetics, 37(6), 592-594. DOI Scopus13 WoS12 Europe PMC10
2005	Yilmaz, A., Shen, S., Adelson, D., Xavier, S., & Zhu, J. (2005). Identification and sequence analysis of chicken Toll-like receptors. Immunogenetics, 56(10), 743-753. DOI Scopus139 WoS131 Europe PMC88
2005	Wang, J., Adelson, D., Yilmaz, A., Sze, S., Jin, Y., & Zhu, J. (2005). Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics. BMC Genomics, 6(1), 45-1-45-17. DOI Scopus56 WoS49 Europe PMC33
2005	Yilmaz, A., Adelson, D., Xavier, S., & Zhu, J. (2005). Annotation of the chicken IL10 gene cluster and effects of lipopolysaccharide stimulation on IL10 gene expression. Animal Genetics, 36(3), 263-265. DOI Scopus2 WoS2 Europe PMC2
2005	Dunlap, K., Palmarini, M., Adelson, D., & Spencer, T. (2005). Sheep endogenous betaretroviruses (enJSRVs) and the hyaluronidase 2 (HYAL2) receptor in the ovine uterus and conceptus. Biology of Reproduction, 73(2), 271-279. DOI Scopus51 WoS45 Europe PMC31
2004	Adelson, D., Cam, G., DeSilva, U., & Franklin, I. (2004). Gene expression in sheep skin and wool (hair). Genomics, 83(1), 95-105. DOI Scopus21 WoS19 Europe PMC14
2004	Lee, E., Raudsepp, T., Kata, S., Adelson, D., Womack, J., Skow, L., & Chowdhary, B. (2004). A 1.4-Mb interval RH map of horse chromosome 17 provides detailed comparison with human and mouse homologues. Genomics, 83(2), 203-215. DOI Scopus19 WoS16 Europe PMC13
2004	Gray, C., Adelson, D., Bazer, F., Burghardt, R., Meeusen, E., & Spencer, T. (2004). Discovery and characterization of an epithelial-specific galectin in the endometrium that forms crystals in the trophectoderm. Proceedings of the National Academy of Sciences of the United States of America, 101(21), 7982-7987. DOI Scopus126 WoS116 Europe PMC87
2004	Ward, T., Valberg, S., Adelson, D., Abbey, C., Binns, M., & Mickelson, J. (2004). Glycogen branching enzyme (GBE1) mutation causing equine glycogen storage disease IV. Mammalian Genome, 15(7), 570-577. DOI Scopus76 WoS51 Europe PMC36
2003	Hamernik, D., & Adelson, D. (2003). USDA stakeholder workshop on animal bioinformatics: Summary and recommendations. Comparative and Functional Genomics, 4(2), 271-274. DOI Scopus2 WoS2
2003	DeSilva, U., Franklin, I., Maddox, J., van Hest, B., & Adelson, D. (2003). Systematic screening of sheep skin cDNA libraries for microsatellite sequences. Cytogenetic and Genome Research, 102(1-4), 79-84. DOI Scopus4 WoS3 Europe PMC3
2002	Adelson, D., Hollis, D., & Brown, G. (2002). Wool fibre diameter and follicle density are not specified simultaneously during wool follicle initiation. Australian Journal of Agricultural Research, 53(9), 1003-1009. DOI Scopus12 WoS13
2001	Maddox, J., Davies, K., Crawford, A., Hulme, D., Vaiman, D., Cribiu, E., . . . van Hest, B. (2001). An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Research, 11(7), 1275-1289. DOI Scopus218 WoS203 Europe PMC137
2001	Koebbe, C. J., Horowitz, M., Levy, E. I., Adelson, D., & Jungries, C. (2001). Endovascular particulate and alcohol embolization for near-fatal epistaxis from a skull base vascular malformation. Pediatric Neurosurgery, 35(5), 257-261. DOI Scopus5 WoS5 Europe PMC3
1998	Wessel, G. M., Berg, L., Adelson, D. L., Cannon, G., & McClay, D. R. (1998). A molecular analysis of hyalin - A substrate for cell adhesion in the hyaline layer of the sea urchin embryo. Developmental Biology, 193(2), 115-126. DOI Scopus66 WoS63 Europe PMC44
1997	Adelson, D. L., Hollis, D. E., Merchant, J. C., & Kelley, B. A. (1997). In vivo effects of epidermal growth factor on epidermal pattern formation and hair follicle initiation in the marsupial bandicoot Isoodon macrourus. Reproduction, Fertility and Development, 9(5), 493-500. DOI Scopus6 WoS5 Europe PMC6
1996	Nishimura, N., Cam, G. R., Nishimura, H., Tohyama, C., Saitoh, Y., & Adelson, D. L. (1996). Evidence for developmentally regulated transcriptional, translational and post-translational control of metallothionein gene expression in hair follicles. Reproduction, Fertility and Development, 8(7), 1089-1096. DOI Scopus7 WoS7 Europe PMC1
1992	Adelson, D. L., Kelley, B. A., & Nagorcka, B. N. (1992). Increase in dermal papilla cells by proliferation during development of the primary wool follicle. Australian Journal of Agricultural Research, 43(4), 843-856. DOI Scopus15 WoS15
1992	Campbell, M. T., Dollin, A. E., & Adelson, D. L. (1992). Differential lectin binding to presumptive cortical cells of the wool follicle bulb. Journal of Cell Science, 102(2), 353-360. DOI Scopus8 WoS7 Europe PMC5
1992	Adelson, D. L., Alliegro, M. C., & McClay, D. R. (1992). On the ultrastructure of hyalin, a cell adhesion protein of the sea urchin embryo extracellular matrix. Journal of Cell Biology, 116(5), 1283-1289. DOI Scopus20 WoS21 Europe PMC10
1991	ADELSON, D. L., MUNRO, S. G., & TUNKS, D. A. (1991). PERTURBATION OF WOOL FIBER CELL-DIFFERENTIATION BY A MIXTURE OF BROMODEOXYURIDINE AND FLUORODEOXYURIDINE. AUSTRALIAN JOURNAL OF AGRICULTURAL RESEARCH, 42(8), 1293-1300. DOI WoS2
1988	Adelson, D. L., & Humphreys, T. (1988). Sea urchin morphogenesis and cell-hyalin adhesion are perturbed by a monoclonal antibody specific for hyalin. Development, 104(3), 391-402. DOI Scopus70 WoS70 Europe PMC43
1985	Noll, H., Matranga, V., Cervello, M., Humphreys, T., Kuwasaki, B., & Adelson, D. (1985). Characterization of toposomes from sea urchin blastula cells: A cell organelle mediating cell adhesion and expressing positional information. Proceedings of the National Academy of Sciences of the United States of America, 82(23), 8062-8066. DOI Scopus52 WoS61 Europe PMC22
1968	ADELSON, D., & MILLER, C. G. (1968). EDUCATION FOR POSITIVE MENTAL HEALTH - REVIEW OF EXISTING RESEARCH AND RECOMMENDATIONS FOR FUTURE STUDIES - DAVIS,JA. COMMUNITY MENTAL HEALTH JOURNAL, 4(1), 101-104.
1967	ADELSON, D. (1967). URBAN CONDITION - DUHL,LJ. COMMUNITY MENTAL HEALTH JOURNAL, 3(4), 410-&.
1966	ADELSON, D. (1966). TRAPPED - FAMILIES AND SCHIZOPHRENIA. AMERICAN JOURNAL OF MENTAL DEFICIENCY, 70(5), 797-&.
1966	ADELSON, D. (1966). RECENT RESEARCH ON CREATIVE APPROACHES TO ENVIRONMENTAL STRESS - PROCEEDINGS OF 4TH INSTITUTE ON PREVENTIVE PSYCHIATRY - OJEMANN,RH. COMMUNITY MENTAL HEALTH JOURNAL, 2(1), 89-91.
1962	ADELSON, D. (1962). SOME ASPECTS OF VALUE CONFLICT UNDER EXTREME CONDITIONS. PSYCHIATRY, 25(3), 273-279. DOI

Book Chapters

Year	Citation
2023	Galbraith, J. D., Ivancevic, A. M., Qu, Z., & Adelson, D. L. (2023). Detecting Horizontal Transfer of Transposons. In Methods in Molecular Biology (Vol. 2607, pp. 45-62). Springer US. DOI
2015	Adelson, D., Qu, Z., Raison, J., & Lim, S. (2015). Bovine Genomics. In D. Garrick, & A. Ruvinsky (Eds.), The Genetics of Cattle (2nd Edition ed., pp. 130-152). Wallingford, Oxfordshire, UK: CAB International.
2015	Adelson, D. L., Buckley, R. M., Ivancevic, A. M., Qu, Z., & Zeng, L. (2015). Retrotransposons: Genomic and trans-genomic agents of change. In Evolutionary Biology: Biodiversification from Genotype to Phenotype (pp. 55-75). Springer International Publishing. DOI Scopus6
2012	Adelson, D. (2012). Bovine genome architecture. In J. Womack (Ed.), Bovine Genomics (1 ed., pp. 123-140). United Kingdom: Wiley. DOI

Conference Papers

Year	Citation
2015	Bharadwaj, V., Lifshitz, J., Adelson, D., Kodibagkar, V. D., & Stabenfeldt, S. E. (2015). EVALUATING THE POTENTIAL FOR NANOPARTICLE DELIVERY AFTER TRAUMATIC BRAIN INJURY. In JOURNAL OF NEUROTRAUMA Vol. 32 (pp. A25). Santa Fe, NM: MARY ANN LIEBERT, INC.
2014	Spaite, D., Stolz, U., Bobrow, B., Chikani, V., Sherrill, D., Sotelo, M., . . . Denninghoff, K. (2014). Association between lowest pre-hospital systolic blood pressure and mortality in major traumatic brain injury: Is there a 'hypotension' threshold?. In BRAIN INJURY Vol. 28 (pp. 566-567). INFORMA HEALTHCARE.
2014	Ling, K., Lee, H., Brautigan, P., Moore, S., Fraser, R., Cheah, P., . . . Scott, H. (2014). Deciphering the secret role of Sox4 gene locus during mouse cerebral corticogenesis. In Journal of Neurochemistry Vol. 130 (pp. 8). Kaohsiung, Taiwan: Wiley.
2008	Satterfield, M., Song, G., Kochan, K., Riggs, P., Zhou, H., Elsik, C., . . . Spencer, T. (2008). Identification of progesterone-regulated genes governing pre-implantation conceptus growth and development. In BIOLOGY OF REPRODUCTION Vol. 78 (pp. 173). Kona, HI: SOC STUDY REPRODUCTION. DOI WoS1
2007	Lewis, S., Farmer, J., Burghardt, R., Newton, G., Adelson, D., Bazer, F., & Spencer, T. (2007). Galectin-15 (LGALS15): A gene unique to sheep and goats?. In BIOLOGY OF REPRODUCTION Vol. 77 (pp. 155). San Antonio, TX: SOC STUDY REPRODUCTION. DOI WoS1
2006	Lee, K. -H., Kim, S. -Y., Whang, E., & Lee, J. -G. (2006). A practitioner's approach to normalizing XQuery expressions. In M. L. Lee, K. L. Tan, & V. Wuwongse (Eds.), DATABASE SYSTEMS FOR ADVANCED APPLICATIONS, PROCEEDINGS Vol. 3882 (pp. 437-453). Singapore, SINGAPORE: SPRINGER-VERLAG BERLIN. WoS5
2005	Dunlap, K. A., Hayashi, K., Adelson, D., Palmarini, M., & Spencer, T. E. (2005). Ovine endogenous betaretroviruses (enJSRVs) regulate conceptus growth and development.. In BIOLOGY OF REPRODUCTION (pp. 82). Ctr Rech Biol Reproduct, Quebec City, CANADA: SOC STUDY REPRODUCTION.
2004	Meyer, J. K., Gray, A., Millimaki, R., Adelson, D. L., Thomas, T. L., & Spencer, T. E. (2004). Identification of a signal peptidase expressed exclusively by the uterine glands throughout pregnancy in the ewe. In BIOLOGY OF REPRODUCTION (pp. 149-150). Univ British Columbia, Vancouver, CANADA: SOC STUDY REPRODUCTION.
2004	Gray, A., Meyer, J. K., Adelson, D. L., Bazer, F. W., Burghardt, R. C., & Spencer, T. E. (2004). Galectin-15 is the novel 14K progesterone-modulated protein from the uterus of sheep that forms crystalline inclusion bodies in endometrial epithelium and conceptus trophectoderm.. In BIOLOGY OF REPRODUCTION (pp. 93). Univ British Columbia, Vancouver, CANADA: SOC STUDY REPRODUCTION.
2003	Gray, C. A., Abbey, C. A., Adelson, D. L., Thomas, T. L., & Spencer, T. E. (2003). Identification of endometrial factors regulating peri-implantation conceptus in the ewe.. In BIOLOGY OF REPRODUCTION Vol. 68 (pp. 333). CINCINNATI, OHIO: SOC STUDY REPRODUCTION.
2003	Cam, G. R., Adelson, D. L., De Silva, U., & Franklin, I. R. (2003). Functional genomics of wool follicle initiation and development in merino sheep. In EXPERIMENTAL DERMATOLOGY Vol. 12 (pp. 227). MELBOURNE, AUSTRALIA: BLACKWELL MUNKSGAARD.
2000	Franklin, I., Adelson, D., Cam, G., Sutton, R., & Van Hest, B. (2000). Discovering quality related genes. In ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES Vol. 13 (pp. 43). UNIV NEW S WALES, SYDNEY, AUSTRALIA: ASIAN-AUSTRALASIAN ASSOC ANIMAL PRODUCTION SOCIETIES. WoS1
1999	Davidson, B. P., & Adelson, D. L. (1999). Growth factors and control of the hair cycle. In D. DyallSmith, & R. Marks (Eds.), DERMATOLOGY AT THE MILLENNIUM (pp. 699-705). SYDNEY, AUSTRALIA: PARTHENON PUBLISHING GROUP LTD.
1999	Nishimura, H., Nishimura, N., Tohyama, C., Cam, G. R., & Adelson, D. L. (1999). Metallothionein expression during wool follicle development in foetal sheep. In C. D. Klaassen (Ed.), METALLOTHIONEIN IV (pp. 321-324). KANSAS CITY, MO: BIRKHAUSER VERLAG AG.
1993	NAGORCKA, B. N., ADELSON, D. L., MOONEY, J. R., & KELLEY, B. A. (1993). PREDICTED AND OBSERVED SPATIAL PREPATTERNS IN (HAIR) WOOL FOLLICLE BULBS. In H. G. Othmer, P. K. Maini, & J. D. Murray (Eds.), EXPERIMENTAL AND THEORETICAL ADVANCES IN BIOLOGICAL PATTERN FORMATION Vol. 259 (pp. 255-266). UNIV OXFORD, MERTON COLL, OXFORD, ENGLAND: PLENUM PRESS DIV PLENUM PUBLISHING CORP.
1992	LEVY, J. H., & ADELSON, D. (1992). EFFECTS OF VECURONIUM-INDUCED HISTAMINE N-METHYLTRANSFERASE INHIBITION ON CUTANEOUS RESPONSES TO HISTAMINE. In AGENTS AND ACTIONS (pp. C211-C212). MARBURG, GERMANY: BIRKHAUSER VERLAG AG.
1992	NAGORCKA, B. N., & ADELSON, D. L. (1992). THE REACTION-DIFFUSION SYSTEM AS A DETERMINANT OF WOOL FIBER DIAMETER, FOLLICLE DENSITY AND FIBER DIAMETER DISTRIBUTION. In WOOL TECHNOLOGY AND SHEEP BREEDING Vol. 40 (pp. 47-51). GEELONG, AUSTRALIA: UNIV NEW SOUTH WALES. WoS4
1981	HIMORI, T., OHNUMA, T., ADELSON, D., HOLLAND, J. F., & GOLDBERG, A. I. (1981). DIFFERENTIAL CELL KILLING AND TERMINAL DIFFERENTIATION (TD) OF A HUMAN ACUTE MYELOGENOUS LEUKEMIA-CELL LINE (HL-60) INVITRO. In PROCEEDINGS OF THE AMERICAN ASSOCIATION FOR CANCER RESEARCH Vol. 22 (pp. 262). AMER ASSOC CANCER RESEARCH.

Conference Items

Year	Citation
2019	Nourmohammadi, S., Nwe Aung, T., Cui, J., Pei, J., De leso, M., Qu, Z., . . . Yool, A. (2019). (Oral presentation) Systematic dissection of the molecular actions of compounds from traditional medicinal mixtures on the migration, invasion and apoptosis of brain, bowel and breast cancer cells. Poster session presented at the meeting of AuPS/ABS Meeting, Canberra, 2019.
2019	Nourmohammadi, S., Yool, A., & Adelson, D. (2019). (Poster presentation) Natural Compounds as Potential Anti-metastatic Treatments for Brain, Bowel and Breast Cancer. Poster session presented at the meeting of Florey Postgraduate Conference.
2018	Nourmohammadi, S., Nwe Aung, T., Yool, A., & Adelson, D. (2018). (Poster presentation) Fractional Deletion of Compound Kushen Injection, A Natural Compound Mixture, Indicates Cytokine Signaling Pathways Are Critical for Its Perturbation of The Cell Cycle. Poster session presented at the meeting of Florey Postgraduate Conference.
2018	Nourmohammadi, S., Yool, A., & Adelson, D. (2018). (Poster presentation) Discovery of the Anti-metastasic Activity of a Chinese medicinal herb mixture 'Compound Kushen Injection' and Identification of the Active Components in Brain, Colon and Breast Cancer Cell Lines. Poster session presented at the meeting of Australian Society for Medical Research (ASMR).
2017	Nourmohammadi, S., Pie, V. J., Kourghi, M., De leso, M. L., Pak, C., Adelson, D. L., & Yool, A. J. (2017). (Oral presentation) Analysis of effective compounds and mechanisms of action of a Chinese traditional herbal medicine (Compound Kushen Injection) on aquaporins involved in cancer cell migration and metastasis.. Poster session presented at the meeting of Gage Ion Channels and Transporters Conference. Canberra, Australia.
2017	Cui, J., Qu, Z., Harata-Lee, Y., Shen, H., & Adelson, D. (2017). West meets east: A systems biology approach to the mechanistic understanding of traditional medicines. Poster session presented at the meeting of BIOCHEMICAL PHARMACOLOGY. Aberdeen, SCOTLAND: PERGAMON-ELSEVIER SCIENCE LTD. DOI
2012	Ghosh, S., Das, P. J., Qu, Z., Fang, E., Arnold, C., Adelson, D. L., . . . Raudsepp, T. (2012). Array CGH Studies in Equine Disorders of Sexual Development - SRY-Positive Sex Reversal and Cryptorchidism. Poster session presented at the meeting of CYTOGENETIC AND GENOME RESEARCH. San Antonio, TX: KARGER.

Internet Publications

Year	Citation
2020	Galbraith, J., Ludington, A., Suh, A., Sanders, K., & Adelson, D. (2020). New environment, new invaders - repeated horizontal transfer of LINEs to sea snakes. Cold Spring Harbor Laboratory. DOI
2020	Galbraith, J., Ludington, A., Suh, A., Sanders, K., & Adelson, D. (2020). New environment, new invaders - repeated horizontal transfer of LINEs to sea snakes. Cold Spring Harbor Laboratory. DOI
-	Zeng, L., Pederson, S. M., Cao, D., Qu, Z., Hu, Z., Adelson, D. L., & Wei, C. (n.d.). Genome-wide analysis of the association of transposable elements with gene regulation suggests that <i>Alu</i> elements have the largest overall regulatory impact. Cold Spring Harbor Laboratory. DOI

Research Support: (Ongoing Research support)

NHMRC Ideas Grant 2021247 Western(CIA) 2023-2026

Understanding non-genetic inheritance in health and disease A$1,433,936

Role: CIB

Research Contract –Shanxi - Zhendong Pharmaceutical Co Ltd 2021-2023

Molecular Mechanisms Associated with CKI Suppression of Mucositis Caused by Radiotherapy

(UA216130)

Role: CI A$805,346

Research Contract –Shanxi - Zhendong Pharmaceutical Co Ltd 2020-2022

Verification of CKI’s Anticancer Targets with CRISPR/Cas (UA205011)

Role: CI A$551,060

Completed Project Funding (since 2001).

USDA-CSREES NRI Chowdhary (PI) 2003-2006

High resolution integrated genetic and physical map of the equine genome. US$870,892

Role: Co-I

Kleberg Foundation Gift Womack (PI) 2005-2007

Bovine Genomics Bioinformatics US$1,000,000

Role: Co-PI

Texas Equine Research Fund Adelson (PI) 2005-2007

Bioinformatics Support for Equine Genomics US$26,000

NSF Young(PI) 2005-2008

Phages of Agronomic Bacteria: A Student Based Genomics Approach. US$261,329

Role: Co-PI

USDA CSREES NRI Elsik (PI) 2007-2010

Bovine Genome Database: A Community Informatics Resource US$999,595

Role: Co-PI

ARC LIEF Grant Leinweber (CI) 2011

Enhancement of South Australian high-performance computing facilities A$430,000

Role: CI

ANDS Project Adelson(CI) 2011-2012

Genomics Data Capture A$250,000

Role: Sole CI

ARC Linkage Project Cooper(CI) 2009-2011

Environmental Genomics: Mining, climate change, water, crime and health A$500,000

Role: CI

USDA AFRI Elsik (PI) 2010-2013

Next Generation Bovine Genome Database US$970,000

Role: Co-PI

NHMRC Project Grant 1011334 Scott (CIA) 2011-2013

Dnmt3L haploinsufficent retrotransposition leads to genetic hypermutation A$593,390

Role: CI

NHMRC Project Grant Scott (CIA) 2012-2014

Identification of genes responsible for familial predispositions to haematological malignancies

Role: CI A$689,754

NHMRC Project Grant Branford (CIA) 2012-2014

Assessment of markers of genomic instability for the prediction of treatment response in chronic myeloid leukaemia. A$570,093

Role: CI

NHMRC Project Grant MacLennan (CIA) 2012-2014

Copy number variations in cerebral palsy A$639,877

Role: CI

NHMRC Project Grant Jensen (CIA) 2012-2014

Understanding the post- transcriptional regulatory roles of the Hu family of RNA-binding proteins using HITS-CLIP

Role: CI A$568,660

ARC Discovery Project O’Bryan (CIA) 2012-2014

HEN1 is a regulator of piRNA metabolism, transcriptional regulation and mammalian male fertility

Role: CI A$344,000

Zhendong Pharmaceutical Co Ltd Adelson(CI) 2012-2017

Zhendong Centre A$2,250,000

Role: CI/Director

The Australian Cancer Research Foundation Lopez(CI) 2010-2017

The ACRF Cancer Genome Facility

Role: Co-CI

A$3,500,000 (ACRF), A$1,050,000 (SA Dept of Health), A$500,000 (Cancer Council SA), A$250,000 (DIISR SuperScience Project, Australian National Data Service), A$400,000 (RAH research funds), A$1,500,000 (5 salaries for 3 years, Medvet PTY LTD (2), SA Pathology RIBG (1), Adelaide University (1 RIBG, 1 IGS) = CI with 11 others.(Lopez, Kumar, Hughes, Scott, Goodall, Tilley, McColl, Paton, Adelson, Gécz, Melo, To)

NHMRC Project Grant 1123341 Scott (CIA) 2017-2019

Genetic autopsy of perinatal death: diagnosis and discovery by Genome Sequencing

Role: Co-CI (CIF) A$989,332

NHMRC Project Grant 1144966 Western(CIA) 2018-2020

Defining the epigenetic origins of maternally inherited disease. A$731,162

Role: Co-CI (CID)

NHMRC Project Grant 1144887 Western(CIA) 2018-2020

Determining the impacts of epigenetic modifying drugs on germline programming and offspring health

Role: Co-CI (CIC)

Research Contract –Shanxi - Zhendong Pharmaceutical Co Ltd 2019-2020

CKI Suppression of Mucositis Caused by Radiotherapy (UA182520)

Role: CI A$644,950

Research Contract – Shanxi – Zhendong Pharmaceutical Co Ltd 2019-2020

Whole genome sequencing and analysis of the medicinal plant Sophora flavescens (Kushen) (UA193693)

Role: CI A$319,708

I teach third year Bioinformatics subjects and postgraduate coursework Bioinformatics.

Current Higher Degree by Research Supervision (University of Adelaide)

Date	Role	Research Topic	Program	Degree Type	Student Load	Student Name
2022	Principal Supervisor	The Evolution, Distribution, and Activity of R2 Elements	Doctor of Philosophy	Doctorate	Full Time	Ms Nozhat Tabassum Hassan
2022	Co-Supervisor	Identity of seminal fluid antigens driving expansion of the female adaptive immune response after mating	Master of Philosophy (Medical Science)	Master	Full Time	Mr Ha Manh Tran
2022	Principal Supervisor	Molecular Mechanisms Associated With CKI Suppression Of Mucositis Caused By Radiotherapy	Doctor of Philosophy	Doctorate	Full Time	Mr Yan Zhou
2022	Principal Supervisor	The Evolution of L1 and L2 Retrotransposons in Therian Mammals and Monotremes	Doctor of Philosophy	Doctorate	Full Time	Mr Alexander James Stuart
2021	Co-Supervisor	Pharmacogenomic testing for psychiatric disorders will better align genotypes to well validated precision medicines.	Doctor of Philosophy	Doctorate	Full Time	Mr Kiflu Gebremicael Tesfamicael
2021	Principal Supervisor	Genome Evolution and Retrotransposon Biology	Doctor of Philosophy	Doctorate	Full Time	Mr Zhenglong Du
2021	Co-Supervisor	The Genetic Epidemiology of Hereditary Pancreatitis in Australia and its effects on patients of Total Pancreatectomy with Auto Islet Transplantation.	Doctor of Philosophy	Doctorate	Full Time	Mr Denghao Wu
2021	Co-Supervisor	A Novel Population Phenotypic and Genetics-Based Approach to Understanding Sensory Preferences of the Global Consumer	Doctor of Philosophy under a Jointly-awarded Degree Agreement with	Doctorate	Full Time	Miss Gabriele Kavaliauskaite
2019	Principal Supervisor	Computational analysis of genome sequencing to understand structural variation	Master of Philosophy	Master	Full Time	Mr Joseph McConnell
2019	Co-Supervisor	Investigating gene regulatory networks in neurodevelopmental disorders during embryonic development and adulthood.	Doctor of Philosophy	Doctorate	Full Time	Ms Urwah Nawaz
2019	Principal Supervisor	Identification of Structural Variation with Long Reads	Doctor of Philosophy	Doctorate	Full Time	Carey Samuel Dessaix
2018	Principal Supervisor	Structural variation in complex genomes	Doctor of Philosophy	Doctorate	Part Time	Dr Mani Ghani Poor Samami

Past Higher Degree by Research Supervision (University of Adelaide)

Date	Role	Research Topic	Program	Degree Type	Student Load	Student Name
2019 - 2021	Co-Supervisor	The role of RNA modifications in Arabidopsis thaliana growth and development	Doctor of Philosophy	Doctorate	Full Time	Dr Pei Qin Ng
2018 - 2020	Co-Supervisor	Transcriptome Analysis of Zebrafish Genetic Models to Reveal Early Molecular Drivers of Alzheimer's Disease	Doctor of Philosophy	Doctorate	Full Time	Miss Nhi Hin
2018 - 2023	Co-Supervisor	Aquaporins - from Ion Channels to Human Cancers	Doctor of Philosophy	Doctorate	Full Time	Mr Saeed Nourmohammadi
2017 - 2019	Principal Supervisor	Measuring genome wide changes in chromatin state using ChIP-seq	Master of Philosophy	Master	Full Time	Miss Catisha Leigh Coburn
2017 - 2021	Principal Supervisor	The Evolution and Adaptive Effects of Transposable Elements in Birds and Elapids	Doctor of Philosophy	Doctorate	Full Time	Mr James Douglas Galbraith
2016 - 2021	Co-Supervisor	Sex and Parental Genome Effects on Bovine Fetal Development	Doctor of Philosophy	Doctorate	Full Time	Ms Cynthia Liu
2016 - 2020	Co-Supervisor	Identification and functional analysis of RNA modifications in Arabidopsis thaliana and Mus musculus	Doctor of Philosophy	Doctorate	Full Time	Miss Jun Li
2015 - 2018	Principal Supervisor	Personalized Medicine Support System for Chronic Myeloid Leukaemia Patients	Doctor of Philosophy	Doctorate	Full Time	Mrs Haneen Reda M Banjar
2015 - 2019	Principal Supervisor	Bioinformatics in Traditional Chinese Medicine (TCM): Potential Anti-Cancer Mechanisms of Compound Kushen Injection (CKI)	Doctor of Philosophy	Doctorate	Full Time	Mr Hanyuan Shen
2015 - 2019	Principal Supervisor	Molecular Mechanisms of Natural Compounds: Compound Kushen Injection (CKI) in Cancer	Doctor of Philosophy	Doctorate	Full Time	Mrs Thazin Nwe Aung
2014 - 2017	Principal Supervisor	Jumping the Fine LINE Between Species: Horizontal Transfer and Evolution of Repetitive Elements in Eukaryotic Species	Doctor of Philosophy	Doctorate	Full Time	Dr Atma Maria Ivancevic
2014 - 2018	Principal Supervisor	The Impact of Transposable Elements on Amniote Evolution	Doctor of Philosophy	Doctorate	Full Time	Miss Lu Zeng
2014 - 2018	Principal Supervisor	Research on Compound Kushen Injection (CKI): Anti-cancer Mechanism Pathway/Network structure	Doctor of Philosophy	Doctorate	Full Time	Mr Jian Cui
2013 - 2017	Principal Supervisor	Evolution of mammalian genome architecture through retrotransposition	Doctor of Philosophy	Doctorate	Full Time	Reuben Mackenzie Buckley
2012 - 2014	Principal Supervisor	Functional analysis of repeat regions in the eukaryotic genomes	Master of Philosophy under a Jointly-awarded Degree Agreement with	Master	Full Time	Miss Lu Zeng
2011 - 2015	Co-Supervisor	Investigation and Application of Methods for Ancient DNA Research	Doctor of Philosophy	Doctorate	Full Time	Dr Steve Richards
2010 - 2014	Principal Supervisor	Identification and Annotation of Recombinant Repeats In Mammals Indicates They Are Experimental Products For Creating Novel Transposable Element Families	Doctor of Philosophy	Doctorate	Full Time	Mr Sim Lin Lim
2010 - 2014	Principal Supervisor	Biomedical Literature Mining	Doctor of Philosophy	Doctorate	Full Time	Dr Mario Fruzangohar
2009 - 2015	Co-Supervisor	Investigating the evolution of replication timing and monoallelic expression in mammals and birds	Doctor of Philosophy	Doctorate	Full Time	Miss Megan Wright
2009 - 2013	Co-Supervisor	Chloroplast DNAs Diversify Nuclear and Mitochondrial Genomes in Plants	Doctor of Philosophy	Doctorate	Full Time	Mr Dong Wang
2009 - 2013	Co-Supervisor	Imprinted Gene Expression and Phenotype of Bovine Concepti with Bos taurus and Bos indicus Genetics	Doctor of Philosophy	Doctorate	Full Time	Dr Mani Ghani Poor Samami
2008 - 2014	Principal Supervisor	"Understanding the Apoptotic Signaling Pathway that Involve In Breast Cancer Using Microarray, Proteomics and Bioinformatics	Doctor of Philosophy	Doctorate	Full Time	Mr Ibrahim Oqla Alanazi
2008 - 2013	Principal Supervisor	Comprehensive Identification and Annotation of Non-Protein-Coding Transcriptomes from Vertebrates Indicates Most ncRNAs are Regulatory	Doctor of Philosophy	Doctorate	Full Time	Dr Zhipeng Qu

Board Memberships

Date Role Board name Institution name Country
2012 - ongoing Board Member South Australian Museum Board South Australian Museum Australia
Committee Memberships

Date Role Committee Institution Country
2017 - ongoing Member ABACBS Conference Committee - Australia

Date	Role	Board name	Institution name	Country
2012 - ongoing	Board Member	South Australian Museum Board	South Australian Museum	Australia

Date	Role	Committee	Institution	Country
2017 - ongoing	Member	ABACBS Conference Committee	-	Australia

Position: Professor
Phone: 83137555
Email: david.adelson@adelaide.edu.au
Fax: 83134362
Campus: North Terrace
Building: The Braggs, floor 2
Org Unit: Molecular and Biomedical Science

Professor David Adelson

Appointments

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Education

Postgraduate Training

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Journals

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Conference Papers

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Internet Publications

Research Support: (Ongoing Research support)

Completed Project Funding (since 2001).

Current Higher Degree by Research Supervision (University of Adelaide)

Past Higher Degree by Research Supervision (University of Adelaide)

Board Memberships

Committee Memberships

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