Professor David Adelson

• Appointments

  Date	Position	Institution name
  2012 - 2021	Board Member	South Australian Museum

• Language Competencies

  Language	Competency
  French	Can read, write and speak
  Spanish - Latin American	Can read, write and speak

• Education

  Date	Institution name	Country	Title
  	University of Hawaii at Manoa - John A Burns School of Medicine	USA	PhD

• Postgraduate Training

  Date	Title	Institution	Country
  	Postdoctoral researcher	Duke University	United States

• Research Interests

  Bioinformatics Bioinformatics Software Evolutionary Biology Gene Expression Genetics Genome Structure and Regulation Genomics Medicinal and Biomolecular Chemistry Traditional Chinese Medicine and Treatments

• Journals

  Year	Citation
  2024	Cai, J., Zhang, Y., He, R., Jiang, L., Qu, Z., Gu, J., . . . Wang, D. (2024). LncRNA DANA1 promotes drought tolerance and histone deacetylation of drought responsive genes in Arabidopsis. EMBO Reports, 25(2), 796-812. DOI Scopus2 Europe PMC1
  2024	Hassan, N. T., Galbraith, J. D., & Adelson, D. L. (2024). Multiple horizontal transfer events of a DNA transposon into turtles, fishes, and a frog. Mobile DNA, 15(1), 8 pages. DOI
  2024	Baer, L., Barthelson, K., Postlethwait, J. H., Adelson, D. L., Pederson, S. M., & Lardelli, M. (2024). Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis. PLoS Computational Biology, 20(2 February), 27 pages. DOI
  2024	Zhou, Y., Li, K., & Adelson, D. L. (2024). An unmet need for pharmacology: Treatments for radiation-induced gastrointestinal mucositis. Biomedicine and Pharmacotherapy, 175, 15 pages. DOI
  2024	Oberin, R., Petautschnig, S., Jarred, E. G., Qu, Z., Tsai, T., Youngson, N. A., . . . Western, P. S. (2024). Fetal growth delay caused by loss of non-canonical imprinting is resolved late in pregnancy and culminates in offspring overgrowth. eLife, 13, e81875-1-e81875-29. DOI Scopus1 Europe PMC2
  2024	Tesfamicael, K. G., Zhao, L., Fernández-Rodríguez, R., Adelson, D. L., Musker, M., Polasek, T. M., & Lewis, M. D. (2024). Efficacy and safety of pharmacogenomic-guided antidepressant prescribing in patients with depression: an umbrella review and updated meta-analysis. Frontiers in Psychiatry, 15, 13 pages. DOI Scopus2 Europe PMC2
  2024	Kalbfleisch, T. S., McKay, S. D., Murdoch, B. M., Adelson, D. L., Almansa-Villa, D., Becker, G., . . . Rosen, B. D. (2024). The Ruminant Telomere-to-Telomere (RT2T) Consortium. Nature Genetics, 56(8), 1566-1573. DOI Scopus2 Europe PMC2
  2023	Zhang, P., He, R., Yang, J., Cai, J., Qu, Z., Yang, R., . . . Wang, D. (2023). The long non-coding RNA DANA2 positively regulates drought tolerance by recruiting ERF84 to promote JMJ29-mediated histone demethylation.. Mol Plant, 16(8), 1339-1353. DOI Scopus8 WoS2 Europe PMC4
  2023	Hassan, N., Galbraith, J., & Adelson, D. (2023). Jumping between Turtles, Fishes, and a Frog: The Unexpected Horizontal Transfer of a DNA Transposon. DOI
  2023	Qu, Z., Wang, W., & Adelson, D. L. (2023). Chromosomal level genome assembly of medicinal plant Sophora flavescens.. Sci Data, 10(1), 1-13. DOI Scopus4 Europe PMC2
  2023	Chung, C., Yang, X., Bae, T., Vong, K. I., Mittal, S., Donkels, C., . . . Miller, M. (2023). Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature Genetics, 55(2), 209-220. DOI Scopus37 Europe PMC30
  2023	Hassan, N. T., & Adelson, D. L. (2023). Fake IDs? Widespread misannotation of DNA transposons as a general transcription factor. Genome Biology, 24(1), 8 pages. DOI
  2023	Baer, L., Barthelson, K., Postlethwait, J., Adelson, D., Pederson, S., & Lardelli, M. (2023). Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis. bioRxiv. DOI
  2023	Qu, Z., Wang, W., & Adelson, D. (2023). The genome of medicinal plant<i>Sophora flavescens</i>has undergone significant expansion of both transposons and genes. DOI
  2023	Yang, J., He, R., Qu, Z., Gu, J., Jiang, L., Zhan, X., . . . Wang, D. (2023). Long noncoding RNA ARTA controls ABA response through MYB7 nuclear trafficking in Arabidopsis.. Dev Cell, 58(13), 1206-1217.e4. DOI Scopus9 Europe PMC6
  2022	Ugalde, I. T., Chaudhari, P. P., Badawy, M., Ishimine, P., McCarten-Gibbs, K. A., Yen, K., . . . Holmes, J. F. (2022). Validation of Prediction Rules for Computed Tomography Use in Children With Blunt Abdominal or Blunt Head Trauma: Protocol for a Prospective Multicenter Observational Cohort Study. JMIR Research Protocols, 11(11), e43027. DOI Scopus2
  2022	Jarred, E. G., Qu, Z., Tsai, T., Oberin, R., Petautschnig, S., Bildsoe, H., . . . Western, P. S. (2022). Transient Polycomb activity represses developmental genes in growing oocytes. Clinical Epigenetics, 14(1), 183-1-183-18. DOI Scopus2 Europe PMC2
  2022	Hawryluk, G. W. J., Selph, S., Lumba-Brown, A., Totten, A. M., Ghajar, J., Aarabi, B., . . . Bell, R. (2022). Rationale and Methods for Updated Guidelines for the Management of Penetrating Traumatic Brain Injury. Neurotrauma Reports, 3(1), 240-247. DOI Scopus9
  2022	Wainwright, C. L., Teixeira, M. M., Adelson, D. L., Buenz, E. J., David, B., Glaser, K. B., . . . Wolfender, J. -L. (2022). Future Directions for the Discovery of Natural Product-Derived Immunomodulating Drugs.. Pharmacological research, 177, 40 pages. DOI Scopus43 WoS19 Europe PMC16
  2022	Galbraith, J. D., Ludington, A. J., Sanders, K. L., Amos, T. G., Thomson, V. A., Enosi Tuipulotu, D., . . . Adelson, D. L. (2022). Horizontal Transposon Transfer and Its Implications for the Ancestral Ecology of Hydrophiine Snakes. Genes, 13(2), 217. DOI Scopus2 Europe PMC1
  2022	Wainwright, C. L., Teixeira, M. M., Adelson, D. L., Buenz, E. J., David, B., Glaser, K. B., . . . Wolfender, J. -L. (2022). Corrigendum to "Future directions for the discovery of natural product-derived immunomodulating drugs: An IUPHAR positional review" [Pharmacol. Res. 177 (2022) 106076].. Pharmacological research, 180, 106207. DOI WoS1
  2022	Li, K., Yan, F., Duan, Z., Adelson, D., & Wei, C. (2022). Widespread of horizontal gene transfer events in eukaryotes. DOI
  2022	Harata-Lee, Y., Qu, Z., Bateman, E., Xiao, X., Keller, M. D., Bowen, J., . . . Adelson, D. L. (2022). Compound Kushen injection reduces severity of radiation-induced gastrointestinal mucositis in rats. Frontiers in Oncology, 12, 929735. DOI Scopus5 Europe PMC3
  2022	Hassan, N., & Adelson, D. (2022). Fake IDs? Widespread misannotation of DNA Transposons as a General Transcription Factor. DOI
  2021	Tang, Y., Qu, Z., Lei, J., He, R., Adelson, D. L., Zhu, Y., . . . Wang, D. (2021). The long noncoding RNA FRILAIR regulates strawberry fruit ripening by functioning as a noncanonical target mimic.. PLoS Genet, 17(3), 1-23. DOI Scopus40 WoS24 Europe PMC22
  2021	Galbraith, J. D., Kortschak, R. D., Suh, A., & Adelson, D. L. (2021). Genome stability is in the eye of the beholder: recent retrotransposon activity varies significantly across avian diversity. biorxiv. DOI
  2021	Galbraith, J. D., Ludington, A. J., Sanders, K. L., Suh, A., & Adelson, D. L. (2021). Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (Laticauda). Biology Letters. DOI
  2021	Galbraith, J., Ludington, A., Edwards, R., Sanders, K., Suh, A., & Adelson, D. (2021). Horizontal transfer and southern migration: the tale of Hydrophiinae’s marine journey. DOI
  2021	Galbraith, J. D., Ludington, A. J., Sanders, K. L., Suh, A., & Adelson, D. L. (2021). Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (<i>Laticauda</i>).. Biology letters, 17(9), 7 pages. DOI Scopus7 WoS5 Europe PMC7
  2021	Galbraith, J. D., Kortschak, R. D., Suh, A., & Adelson, D. L. (2021). Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity. Genome Biology and Evolution, 13(12), 1-14. DOI Scopus11 WoS6 Europe PMC9
  2021	Kumar, S., Kumar, S., Sharma, U., Pandey, A. K., & Bhardwaj, R. K. (2021). THERAPEUTIC MANAGEMENT OF POSTPARTUM CERVICO-VAGINAL PROLAPSE IN A MURRAH BUFFALO. Applied Biological Research, 23(4), 396-397. DOI
  2020	Cui, J., Qu, Z., Harata-Lee, Y., Shen, H., Aung, T. N., Wang, W., . . . Adelson, D. L. (2020). The effect of compound kushen injection on cancer cells: Integrated identification of candidate molecular mechanisms. PLoS One, 15(7), 1-18. DOI Scopus15 WoS10 Europe PMC11
  2020	Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., . . . Edmonds, H. (2020). The tuatara genome reveals ancient features of amniote evolution. Nature, 584(7821), 403-409. DOI Scopus99 WoS81 Europe PMC59
  2020	Gemmell, N., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J., . . . Edmonds, H. (2020). Publisher Correction: The tuatara genome reveals ancient features of amniote evolution (Nature, (2020), 584, 7821, (403-409), 10.1038/s41586-020-2561-9). Nature, 585(7823), E3. DOI
  2020	Galbraith, J. D., Ludington, A. J., Suh, A., Sanders, K. L., & Adelson, D. L. (2020). New environment, new invaders—repeated horizontal transfer of LINEs to sea snakes. Genome Biology and Evolution, 12(12), 2370-2383. DOI Scopus9 WoS7 Europe PMC9
  2020	Hin, N., Newman, M., Kaslin, J., Douek, A. M., Lumsden, A., Moussavi Nik, S. H., . . . Lardelli, M. (2020). Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2. PloS one, 15(1), e0227258. DOI Scopus22 WoS17 Europe PMC16
  2020	Zhang, J., Sun, L., Cui, J., Wang, J., Liu, X., Aung, T. N., . . . Lin, L. (2020). Yiqi Chutan Tang Reduces Gefitinib-Induced Drug Resistance in Non-Small-Cell Lung Cancer by Targeting Apoptosis and Autophagy. Cytometry Part A, 97(1), 70-77. DOI Scopus15 WoS14 Europe PMC10
  2019	Aung, T. N., Nourmohammadi, S., Qu, Z., Harata-Lee, Y., Cui, J., Shen, H. Y., . . . Adelson, D. L. (2019). Fractional deletion of Compound Kushen Injection indicates cytokine signaling pathways are critical for its perturbation of the cell cycle. Scientific Reports, 9(1), 14200-1-14200-16. DOI Scopus10 WoS7 Europe PMC8
  2019	Shen, H., Qu, Z., Harata-Lee, Y., Cui, J., Aung, T. N., Wang, W., . . . Adelson, D. L. (2019). A new strategy for identifying mechanisms of drug-drug interaction using transcriptome analysis: Compound Kushen Injection as a proof of principle. Scientific Reports, 9(1), 15889-1-15889-12. DOI Scopus4 WoS4 Europe PMC2
  2019	Gemmell, N., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, R., . . . Board, N. T. (2019). The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order. DOI
  2019	Nourmohammadi, S., Aung, T. N., Cui, J., Pei, J., De Ieso, M. L., Harata-Lee, Y., . . . Yool, A. J. (2019). Effect of compound kushen injection, a natural compound mixture, and its identified chemical components on migration and invasion of colon, brain, and breast cancer cell lines. Frontiers in Oncology, 9(APR), 1-14. DOI Scopus47 WoS38 Europe PMC33
  2019	Zhang, J., Qu, Z., Yao, H., Sun, L., Harata-Lee, Y., Cui, J., . . . Lin, L. (2019). An effective drug sensitizing agent increases gefitinib treatment by down regulating PI3K/Akt/mTOR pathway and up regulating autophagy in non-small cell lung cancer. Biomedicine and Pharmacotherapy, 118, 109169-1-109169-10. DOI Scopus25 WoS19 Europe PMC19
  2019	Shen, H., Qu, Z., Harata-Lee, Y., Aung, T. N., Cui, J., Wang, W., . . . Adelson, D. L. (2019). Understanding the mechanistic contribution of herbal extracts in compound Kushen injection with transcriptome analysis. Frontiers in Oncology, 9(JULY), 632-1-632-11. DOI Scopus21 WoS15 Europe PMC11
  2019	Cui, J., Qu, Z., Harata-Lee, Y., Nwe Aung, T., Shen, H., Wang, W., & Adelson, D. L. (2019). Cell cycle, energy metabolism and DNA repair pathways in cancer cells are suppressed by Compound Kushen Injection. BMC Cancer, 19(1), 10 pages. DOI Scopus35 WoS31 Europe PMC22
  2019	Ren, H., Zhao, J., Fan, D., Wang, Z., Zhao, T., Li, Y., . . . Hao, H. (2019). Alkaloids from nux vomica suppresses colon cancer cell growth through Wnt/β-catenin signaling pathway. Phytotherapy Research, 33(5), 1570-1578. DOI Scopus28 WoS18 Europe PMC16
  2019	Shen, H., Qu, Z., Harata-Lee, Y., Cui, J., Aung, T. N., Wang, W., . . . Adelson, D. (2019). A new strategy for identifying mechanisms of drug-drug interaction using transcriptome analysis: Compound Kushen injection as a proof of principle. DOI
  2019	Shen, H., Qu, Z., Harata-Lee, Y., Aung, T. N., Cui, J., Wang, W., . . . Adelson, D. (2019). Understanding the Mechanistic Contribution of Herbal Extracts in Compound Kushen Injection with Transcriptome Analysis. DOI
  2018	Cui, J., Qu, Z., Harata-Lee, Y., Shen, H., Nwe Aung, T., Wang, W., . . . Adelson, D. (2018). The Effect of Compound Kushen Injection on Cancer Cells: Integrated Identification of Candidate Molecular Mechanisms. DOI
  2018	Nourmohammadi, S., Aung, T. N., Cui, J., Pei, J., De Ieso, M. L., Harata-Lee, Y., . . . Yool, A. (2018). Effect of Compound Kushen Injection, a natural compound mixture, and its identified chemical components on migration and invasion of colon, brain and breast cancer cell lines. DOI Europe PMC1
  2018	Zeng, L., Pederson, S., Kortschak, D., & Adelson, D. (2018). Transposable elements and gene expression during the evolution of amniotes. DOI
  2018	Stringer, J., Forster, S., Qu, Z., Prokopuk, L., O'Bryan, M., Gardner, D., . . . Western, P. (2018). Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance. BMC Biology, 16(1), 104. DOI Scopus17 WoS13 Europe PMC13
  2018	Aung, T. N., Nourmohammadi, S., Qu, Z., Harata-Lee, Y., Cui, J., Shen, H. Y., . . . Adelson, D. L. (2018). Fractional Deletion Of Compound Kushen Injection, A Natural Compound Mixture, Indicates Cytokine Signaling Pathways Are Critical For Its Perturbation Of The Cell Cycle. DOI Europe PMC1
  2018	Alanazi, I., Ebrahimie, E., Hoffmann, P., & Adelson, D. (2018). Correction to: Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis (Apoptosis, (2013), 18, 11, (1291-1305), 10.1007/s10495-013-0887-6). Apoptosis, 23(1), 92. DOI Scopus1 WoS1
  2018	Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., . . . Reich, D. (2018). A comprehensive genomic history of extinct and living elephants. Proceedings of the National Academy of Sciences of the United States of America, 115(11), 2566-2574. DOI Scopus124 WoS101 Europe PMC64
  2018	Zeng, L., Kortschak, R., Raison, J., Bertozzi, T., & Adelson, D. (2018). Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies. PLoS ONE, 13(3), 1-17. DOI Scopus20 WoS15 Europe PMC18
  2018	Buckley, R. M., Kortschak, R. D., & Adelson, D. L. (2018). Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.. PLoS computational biology, 14(4), e1006091. DOI Scopus1 Europe PMC1
  2018	Zeng, L., Pederson, S., Cao, D., Qu, Z., Hu, Z., Adelson, D., & Wei, C. (2018). Genome-Wide Analysis of the Association of Transposable Elements with Gene Regulation Suggests that Alu Elements Have the Largest Overall Regulatory Impact. Journal of Computational Biology, 25(6), 1-12. DOI Scopus12 WoS10 Europe PMC8
  2018	Hin, N., Newman, M., Kaslin, J., Douek, A. M., Lumsden, A., Zhou, X., . . . Lardelli, M. (2018). Accelerated brain aging towards transcriptional inversion in a zebrafish model of familial Alzheimer's disease. BioRxiv, OnlinePubl. DOI
  2018	Mills, P., Adelson, D., & Yu, I. (2018). Chinese herbal medicine versus other interventions in the treatment of type 2 diabetes: A systematic review of randomized controlled trial.. Journal of Evidence-Based Medicine, 23, 1-10. DOI Scopus12 WoS10 Europe PMC3
  2018	Zeng, L., Pederson, S., Kortschak, R., & Adelson, D. (2018). Transposable elements and gene expression during the evolution of amniotes. Mobile DNA, 9(1), 17-1-17-9. DOI Scopus14 WoS15 Europe PMC9
  2018	Ivancevic, A., Kortschak, R., Bertozzi, T., & Adelson, D. (2018). Horizontal transfer of BovB and L1 retrotransposons in eukaryotes. Genome Biology, 19(1), 13 pages. DOI Scopus64 WoS52 Europe PMC44
  2018	Liang, Q., Qu, Z., Liang, Y., Feng, Q., Niu, X., Bai, T., . . . Adelson, D. L. (2018). Zuo gui wan alters expression of energy metabolism genes and prevents cell death in high-glucose loaded mouse embryos. Evidence-based Complementary and Alternative Medicine, 2018(1), 2409471-1-2409471-11. DOI Scopus6 WoS3 Europe PMC2
  2018	Banjar, H., Adelson, D., Brown, F., & Chaudhri, N. (2018). Corrigendum: Intelligent techniques using molecular data analysis in leukaemia: An opportunity for personalized medicine support system (BioMed Research International (2017) 2017 (12) DOI: 10.1155/2017/3587309). BioMed Research International, 2018, 1 page. DOI
  2018	Luo, L., Bao, S., Mao, J., & Ding, Z. (2018). Industrial Process Monitoring Based on Knowledge Data Integrated Sparse Model and Two-Level Deviation Magnitude Plots. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH, 57(2), 611-622. DOI
  2017	Ivancevic, A., Daniel Kortschak, R., Bertozzi, T., & Adelson, D. (2017). Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species. DOI
  2017	Banjar, H., Adelson, D., Brown, F., & Leclercq, T. (2017). Personalized medicine support system : resolving conflict in allocation to risk groups and predicting patient molecular response to targeted therapy. Health Informatics - An International Journal, 6(2), 1-21. DOI
  2017	Banjar, H., Adelson, D., Brown, A., & Chaudhri, N. (2017). Intelligent techniques using molecular data analysis in leukaemia: an opportunity for personalized medicine support system. BioMed Research International, 2017, 3587309-1-3587309-21. DOI Scopus10 WoS9 Europe PMC6
  2017	Daniel Kortschak, R., & L Adelson, D. (2017). bíogo/ncbi: interfaces to NCBI services for the Go language. The Journal of Open Source Software, 2(13), 234. DOI
  2017	Yu, C., Qu, Z., Zhang, Y., Zhang, X., Lan, T., Adelson, D. L., . . . Zhu, Y. (2017). Seed weight differences between wild and domesticated soybeans are associated with specific changes in gene expression. Plant Cell Reports, 36(9), 1417-1426. DOI Scopus12 WoS9 Europe PMC8
  2017	Hempfling, A., Lim, S., Adelson, D., Evans, J., O Connor, A., Qu, Z., . . . Bergmann, M. (2017). Expression patterns of HENMT1 and PIWIL1 in human testis: implications for transposon expression. Reproduction, 154(4), 363-374. DOI Scopus31 WoS22 Europe PMC24
  2017	Li, J., Harata-Lee, Y., Denton, M., Feng, Q., Rathjen, J., Qu, Z., & Adelson, D. (2017). Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis. Cell Discovery, 3(1), 17031-1-17031-13. DOI Scopus83 WoS77 Europe PMC58
  2017	Buckley, R., Kortschak, R., Raison, J., & Adelson, D. (2017). Similar evolutionary trajectories for retrotransposon accumulation in mammals. Genome Biology and Evolution, 9(9), 2336-2353. DOI Scopus17 WoS15 Europe PMC13
  2017	Banjar, H., Ranasinghe, D., Brown, F., Adelson, D., Kroger, T., Leclercq, T., . . . Chaudhri, N. (2017). Modelling predictors of molecular response to frontline imatinib for patients with chronic myeloid leukaemia. PLoS ONE, 12(1), 1-23. DOI Scopus5 WoS3 Europe PMC3
  2017	Wang, D., Qu, Z., Yang, L., Zhang, Q., Liu, Z., Do, T., . . . Zhu, J. (2017). Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants. Plant Journal, 90(1), 133-146. DOI Scopus117 WoS95 Europe PMC63
  2017	Fruzangohar, M., Ebrahimie, E., & Adelson, D. (2017). A novel hypothesis-unbiased method for gene ontology enrichment based on transcriptome data. PLoS ONE, 12(2), e0170486-1-e0170486-14. DOI Scopus17 WoS13 Europe PMC13
  2017	Aung, T., Qu, Z., Kortschak, R., & Adelson, D. (2017). Understanding the effectiveness of natural compound mixtures in cancer through their molecular mode of action. International Journal of Molecular Sciences, 18(3), 20 pages. DOI Scopus261 WoS190 Europe PMC124
  2017	Kortschak, R. D., Pedersen, B. S., & Adelson, D. L. (2017). bíogo/hts: high throughput sequence handling for the Go language. The Journal of Open Source Software, 2(10), 168-1. DOI
  2017	Kortschak, R. D., Snyder, J. B., Maragkakis, M., & Adelson, D. L. (2017). bíogo: a simple high-performance bioinformatics toolkit for the Go language. The Journal of Open Source Software, 2(10), 1. DOI
  2016	Ling, K., Brautigan, P., Moore, S., Fraser, R., Cheah, P., Raison, J., . . . Scott, H. (2016). Derivation of an endogenous small RNA from double-stranded Sox4 sense and natural antisense transcripts in the mouse brain. Genomics, 107(2-3), 88-99. DOI Scopus14 WoS12 Europe PMC10
  2016	Ling, K., Brautigan, P., Moore, S., Fraser, R., Leong, M., Leong, J., . . . Scott, H. (2016). In depth analysis of the Sox4 gene locus that consists of sense and natural antisense transcripts. Data in Brief, 7, 282-290. DOI Scopus4 WoS3 Europe PMC2
  2016	Qu, Z., Cui, J., Harata-Lee, Y., Thazin Nwe Aung, T., Feng, Q., Raison, J., . . . Adelson, D. (2016). Identification of candidate anti-cancer molecular mechanisms of compound kushen injection using functional genomics. Oncotarget, 7(40), 66003-66019. DOI Scopus64 WoS54 Europe PMC36
  2016	Ivancevic, A., Kortschak, R., Bertozzi, T., & Adelson, D. (2016). LINEs between species: evolutionary dynamics of LINE-1 retrotransposons across the eukaryotic tree of life. Genome Biology and Evolution, 8(11), 3301-3322. DOI Scopus49 WoS42 Europe PMC39
  2015	Lim, S. L., Qu, Z. P., Kortschak, R. D., Lawrence, D. M., Geoghegan, J., Hempfling, A. -L., . . . O'Bryan, M. K. (2015). Correction: HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse.. PLoS genetics, 11(12), e1005782. DOI Europe PMC2
  2015	McMichael, G., Bainbridge, M., Haan, E., Corbett, M., Gardner, A., Thompson, S., . . . MacLennan, A. (2015). Whole-exome sequencing points to considerable genetic heterogeneity of cerebral palsy. Molecular Psychiatry, 20(2), 176-182. DOI Scopus172 WoS123 Europe PMC104
  2015	Alanazi, I., Hoffmann, P., & Adelson, D. (2015). MicroRNAs are part of the regulatory network that controls EGF induced apoptosis, including elements of the JAK/STAT pathway, in A431 cells. PLoS One, 10(3), e0120337-1-e0120337-20. DOI Scopus21 WoS18 Europe PMC18
  2015	Fruzangohar, M., Ebrahimie, E., Ogunniyi, A. D., Mahdi, L. K., Paton, J. C., & Adelson, D. L. (2015). Correction: Comparative GO: A web application for comparative gene ontology and gene ontology-based gene selection in bacteria. PLoS ONE, 10(4), 1 page. DOI Scopus6 WoS4 Europe PMC3
  2015	Hu, Z., Scott, H., Qin, G., Zheng, G., Chu, X., Xie, L., . . . Wei, C. (2015). Revealing missing human protein isoforms based on ab initio prediction, RNA-seq and proteomics. Scientific Reports, 5(1), 10940-1-10940-15. DOI Scopus32 WoS26 Europe PMC17
  2015	Lim, S., Qu, Z., Kortschak, R., Lawrence, D., Geoghegan, J., Hempfling, A., . . . O'Bryan, M. (2015). HENMT1 and piRNA stability are required for adult male germ cell transposon repression and to define the spermatogenic program in the mouse. PLoS Genetics, 11(10), e1005620-1-e1005620-30. DOI Scopus95 WoS76 Europe PMC73
  2014	Gagliardi, L., Schreiber, A., Hahn, C., Feng, J., Cranston, T., Boon, H., . . . Scott, H. (2014). ARMC5 mutations are common in familial bilateral macronodular adrenal hyperplasia. Journal of Clinical Endocrinology and Metabolism, 99(9), E1784-E1792. DOI Scopus99 WoS69 Europe PMC59
  2014	Wang, D., Qu, Z., Adelson, D., Zhu, J., & Timmis, J. (2014). Transcription of nuclear organellar DNA in a model plant system. Genome Biology and Evolution, 6(6), 1327-1334. DOI Scopus15 WoS14 Europe PMC12
  2014	Buckley, R., & Adelson, D. (2014). Mammalian genome evolution as a result of epigenetic regulation of transposable elements. Biomolecular Concepts, 5(3), 183-194. DOI Scopus11 Europe PMC7
  2014	Jiang, Y., Xie, M., Chen, W., Talbot, R., Maddox, J., Faraut, T., . . . Dalrymple, B. (2014). The sheep genome illuminates biology of the rumen and lipid metabolism. Science, 344(6188), 1168-1173. DOI Scopus357 WoS308 Europe PMC275
  2014	Ebrahimi, M., Aghagolzadeh, P., Shamabadi, N., Tahmasebi, A., Alsharifi, M., Adelson, D., . . . Ebrahimie, E. (2014). Understanding the undelaying mechanism of HASubtyping in the level of physic-chemal characteristics of protein. PLoS One, 9(5), e96984-1-e96984-14. DOI Scopus26 WoS18 Europe PMC15
  2014	Lim, S., Kortschak, R., & Adelson, D. (2014). Discovery of a novel long terminal repeat (LTR2i-SS) in Sus Scrofa. Animal Genetics, 45(3), 367-372. DOI
  2014	Mahdi, L., Deihimi, T., Zamansani, F., Fruzangohar, M., Adelson, D., Paton, J., . . . Ebrahimie, E. (2014). A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease. BMC Genomics, 15(1), 769-1-769-15. DOI Scopus16 WoS14 Europe PMC14
  2014	Ghosh, S., Qu, Z., Das, P., Fang, E., Juras, R., Cothran, E., . . . Raudsepp, T. (2014). Copy number variation in the horse genome. PLoS Genetics, 10(10), e1004712-1-e1004712-19. DOI Scopus61 WoS51 Europe PMC51
  2013	Ivancevic, A., Walsh, A., Kortschak, R., & Adelson, D. (2013). Jumping the fine LINE between species: Horizontal transfer of transposable elements in animals catalyses genome evolution. Bioessays, 35(12), 1071-1082. DOI Scopus38 WoS34 Europe PMC28
  2013	Bellone, R., Holl, H., Sealuri, V., Devi, S., Maddodi, N., Archer, S., . . . Brooks, S. (2013). Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse. PLoS One, 8(10), 1-14. DOI Scopus95 WoS81 Europe PMC57
  2013	Alanazi, I., Ebrahimie, E., Hoffmann, P., & Adelson, D. (2013). Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis. Apoptosis, 18(11), 1291-1305. DOI Scopus23 WoS19 Europe PMC15
  2013	Fruzangohar, M., Kroeger, T., & Adelson, D. (2013). Improved part-of-speech prediction in suffix analysis. PLoS One, 8(10), 1-6. DOI Scopus7 WoS6 Europe PMC1
  2013	Mahdi, L., Ebrahimie, E., Adelson, D., Paton, J., & Ogunniyi, A. (2013). A transcription factor contributes to pathogenesis and virulence in streptococcus pneumoniae. PLoS One, 8(8), 1-9. DOI Scopus14 WoS13 Europe PMC12
  2013	Roberts, N., Kortschak, R., Parker, W., Schreiber, A., Branford, S., Scott, H., . . . Adelson, D. (2013). A comparative analysis of algorithms for somatic SNV detection in cancer. Bioinformatics, 29(18), 2223-2230. DOI Scopus78 WoS67 Europe PMC64
  2013	Fruzangohar, M., Ebrahimie, E., Ogunniyi, A., Mahdi, L., Paton, J., & Adelson, D. (2013). Comparative GO: a web application for comparative Gene Ontology and Gene Ontology-based gene selection in bacteria. PLoS One, 8(3), 1-8. DOI Scopus58 WoS53 Europe PMC44
  2013	Walsh, A., Kortschak, R., Gardner, M., Bertozzi, T., & Adelson, D. (2013). Widespread horizontal transfer of retrotransposons. Proceedings of the National Academy of Sciences of the United States of America, 110(3), 1012-1016. DOI Scopus101 WoS92 Europe PMC77
  2012	Qu, Z., & Adelson, D. (2012). Identification and comparative analysis of ncRNAs in human, mouse and zebrafish indicate a conserved role in regulation of genes expressed in brain. PLoS One, 7(12), 1-14. DOI Scopus29 WoS21 Europe PMC20
  2012	Qu, Z., & Adelson, D. (2012). Bovine ncRNAs are abundant, primarily intergenic, conserved and associated with regulatory genes. PLoS One, 7(8), 1-14. DOI Scopus44 WoS28 Europe PMC35
  2012	Qu, Z., & Adelson, D. (2012). Evolutionary conservation and functional roles of ncRNA. Frontiers in Genetics, 3(205), 1-11. DOI Scopus68 Europe PMC47
  2011	Vidale, P., Piras, F., Nergadze, S., Bertoni, L., Verini-Supplizi, A., Adelson, D., . . . Giulotto, E. (2011). Chromosomal assignment of six genes (EIF4G3, HSP90, RBBP6, IL8, TERT, and TERC) in four species of the genus Equus. Animal Biotechnology, 22(3), 119-123. DOI Scopus4 WoS3 Europe PMC4
  2011	Ling, K., Brautigan, P., Hahn, C., Daish, T., Rayner, J., Cheah, P., . . . Scott, H. (2011). Deep sequencing analysis of the developing mouse brain reveals a novel microRNA. BMC Genomics, 12(1), 1-15. DOI Scopus53 WoS44 Europe PMC37
  2011	Appels, R., Adelson, D., Moolhiujzen, P., Webster, H., Barrero, R., & Bellgard, M. (2011). Genome studies at the PAG 2011 conference. Functional & Integrative Genomics, 11(1), 1-11. DOI Scopus2 WoS2 Europe PMC5
  2011	Childers, C., Reese, J., Sundaram, J., Vile, D., Dickens, C., Childs, K., . . . Elsik, C. (2011). Bovine Genome Database: Integrated tools for genome annotation and discovery. Nucleic Acids Research, 39(SUPPL. 1), D830-D834. DOI Scopus27 WoS26 Europe PMC17
  2010	Adelson, D., Raison, J., Garber, M., & Edgar, R. (2010). Interspersed repeats in the horse (Equus caballus); spatial correlations highlight conserved chromosomal domains. Animal Genetics, 41(Suppl 2), 91-99. DOI Scopus17 WoS14 Europe PMC12
  2010	Rios, J., Fleming, J., Bryant, U., Carter, C., Huber, J., Long, M., . . . Adelson, D. (2010). OAS1 polymorphisms are associated with susceptibility to West Nile encephalitis in horses. PLoS One, 5(5), 1-9. DOI Scopus40 WoS37 Europe PMC28
  2009	Bovine Genome Sequencing and Analysis Consortium., Elsik, C., Tellam, R., & Worley, K. (2009). The genome sequence of Taurine cattle: a window to ruminant biology and evolution. Science, 324(5926), 522-528. DOI Scopus967 WoS885 Europe PMC678
  2009	Wade, C., Giulotto, E., Sigurdsson, S., Zoli, M., Gnerre, S., Imsland, F., . . . Guerin, G. (2009). Genome sequence, comparative analysis, and population genetics of the domestic horse. Science, 326(5954), 865-867. DOI Scopus634 WoS560 Europe PMC452
  2009	Satterfield, M., Song, G., Kochan, K., Riggs, P., Simmons, R., Elsik, C., . . . Spencer, T. (2009). Discovery of candidate genes and pathways in the endometrium regulating ovine blastocyst growth and conceptus elongation. Physiological Genomics, 39(2), 85-99. DOI Scopus72 WoS69 Europe PMC56
  2009	Adelson, D., Raison, J., & Edgar, R. (2009). Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome. Proceedings of the National Academy of Sciences of the United States of America, 106(31), 12855-12860. DOI Scopus86 WoS77 Europe PMC63
  2009	Salih, H., & Adelson, D. (2009). QTL global meta-analysis: are trait determining genes clustered?. BMC Genomics, 10(1), 1-8. DOI Scopus26 WoS20 Europe PMC17
  2008	Adelson, D. (2008). Insights and applications from sequencing the bovine genome. Reproduction Fertility and Development, 20(1), 54-60. DOI Scopus5 WoS3 Europe PMC4
  2007	Rios, J., Perelygin, A., Long, M., Lear, T., Zharkikh, A., Brinton, M., & Adelson, D. (2007). Characterization of the equine 2'-5' oligoadenylate synthetase 1 (OAS1) and ribonuclease L (RNASEL) innate immunity genes. BMC Genomics, 8(313), WWW 1-WWW 14. DOI Scopus15 WoS15 Europe PMC8
  2007	Brooks, S., Lear, T., Adelson, D., & Bailey, E. (2007). A chromosome inversion near the KIT gene and the Tobiano spotting pattern in horses. Cytogenetic and Genome Research, 119(3-4), 225-230. DOI Scopus86 WoS75 Europe PMC52
  2007	Murphy, B., Lear, T., Adelson, D., & Fitzgerald, B. (2007). Chromosomal assignments and sequences for the equine core circadian clock genes. Animal Genetics, 38(1), 84-85. DOI Scopus8 WoS6 Europe PMC3
  2007	Snelling, W., Chiu, R., Schein, J., Hobbs, M., Abbey, C., Adelson, D., . . . Zhao, S. (2007). A physical map of the bovine genome. Genome Biology, 8(8), 1-17. DOI Scopus73 WoS61 Europe PMC47
  2007	Seabury, C., Gill, C., Templeton, J., Dyar, J., Derr, J., Adelson, D., . . . Womack, J. (2007). Molecular characterization of the Rocky Mountain elk (Cervus elaphus nelsoni) PRNP putative promoter. Journal of Heredity, 98(7), 678-686. DOI Scopus4 WoS3 Europe PMC3
  2007	Lewis, S., Farmer, J., Burghardt, R., Newton, G., Johnson, G., Adelson, D., . . . Spencer, T. (2007). Galectin 15 (LGALS15): A gene uniquely expressed in the uteri of sheep and goats that functions in trophoblast attachment. Biology of Reproduction, 77(6), 1027-1036. DOI Scopus48 WoS46 Europe PMC34
  2006	Gray, C., Abbey, C., Beremand, P., Choi, Y., Farmer, J., Adelson, D., . . . Spencer, T. (2006). Identification of endometrial genes regulated by early pregnancy progesterone and interferon tau in the ovine uterus. Biology of Reproduction, 74(2), 383-394. DOI Scopus155 WoS143 Europe PMC109
  2006	Nergadze, S., Magnani, E., Attolini, C., Bertoni, L., Adelson, D., Cappelli, K., . . . Giulotto, E. (2006). Assignment of the Equus caballus interleukin 8 gene (IL8) to chromosome 3q14.2→q14.3 by in situ hybridization. Cytogenetic and Genome Research, 112(3-4), 341B.1-341B.2. DOI Scopus5 WoS4 Europe PMC3
  2006	Bellone, R., Lear, T., Adelson, D., & Bailey, E. (2006). Comparative mapping of oculocutaneous albinism type II (OCA2) transient receptor potential cation channel subfamily M member 1 (TRPM1) and two equine microsatellites ASBO8 and 1CA43 among four equid species by fluorescence in situ hybridization. Cytogenetic and Genome Research, 114(1), 93A1-93A3. DOI Scopus12 WoS8 Europe PMC7
  2006	Polineni, P., Aragonda, A., Xavier, S., Furuta, R., & Adelson, D. (2006). The bovine QTL viewer: A web accessible database of bovine Quantitative Trait Loci. BMC Bioinformatics, 7(5), 7 pages. DOI Scopus36 WoS35 Europe PMC26
  2006	Wunderlich, K., Abbey, C., Clayton, D., Song, Y., Schein, J., Georges, M., . . . Gill, C. (2006). A 2.5-Mb contig constructed from Angus Longhorn and horned Hereford DNA spanning the polled interval on bovine chromosome 1. Animal Genetics, 37(6), 592-594. DOI Scopus13 WoS12 Europe PMC10
  2005	Yilmaz, A., Shen, S., Adelson, D., Xavier, S., & Zhu, J. (2005). Identification and sequence analysis of chicken Toll-like receptors. Immunogenetics, 56(10), 743-753. DOI Scopus147 WoS131 Europe PMC91
  2005	Wang, J., Adelson, D., Yilmaz, A., Sze, S., Jin, Y., & Zhu, J. (2005). Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics. BMC Genomics, 6(1), 45-1-45-17. DOI Scopus57 WoS49 Europe PMC33
  2005	Yilmaz, A., Adelson, D., Xavier, S., & Zhu, J. (2005). Annotation of the chicken IL10 gene cluster and effects of lipopolysaccharide stimulation on IL10 gene expression. Animal Genetics, 36(3), 263-265. DOI Scopus2 WoS2 Europe PMC2
  2005	Dunlap, K., Palmarini, M., Adelson, D., & Spencer, T. (2005). Sheep endogenous betaretroviruses (enJSRVs) and the hyaluronidase 2 (HYAL2) receptor in the ovine uterus and conceptus. Biology of Reproduction, 73(2), 271-279. DOI Scopus52 WoS45 Europe PMC32
  2004	Adelson, D., Cam, G., DeSilva, U., & Franklin, I. (2004). Gene expression in sheep skin and wool (hair). Genomics, 83(1), 95-105. DOI Scopus21 WoS19 Europe PMC14
  2004	Lee, E., Raudsepp, T., Kata, S., Adelson, D., Womack, J., Skow, L., & Chowdhary, B. (2004). A 1.4-Mb interval RH map of horse chromosome 17 provides detailed comparison with human and mouse homologues. Genomics, 83(2), 203-215. DOI Scopus19 WoS16 Europe PMC13
  2004	Gray, C., Adelson, D., Bazer, F., Burghardt, R., Meeusen, E., & Spencer, T. (2004). Discovery and characterization of an epithelial-specific galectin in the endometrium that forms crystals in the trophectoderm. Proceedings of the National Academy of Sciences of the United States of America, 101(21), 7982-7987. DOI Scopus131 WoS118 Europe PMC95
  2004	Ward, T., Valberg, S., Adelson, D., Abbey, C., Binns, M., & Mickelson, J. (2004). Glycogen branching enzyme (GBE1) mutation causing equine glycogen storage disease IV. Mammalian Genome, 15(7), 570-577. DOI Scopus87 WoS52 Europe PMC39
  2003	Hamernik, D., & Adelson, D. (2003). USDA stakeholder workshop on animal bioinformatics: Summary and recommendations. Comparative and Functional Genomics, 4(2), 271-274. DOI Scopus2 WoS2
  2003	DeSilva, U., Franklin, I., Maddox, J., van Hest, B., & Adelson, D. (2003). Systematic screening of sheep skin cDNA libraries for microsatellite sequences. Cytogenetic and Genome Research, 102(1-4), 79-84. DOI Scopus4 WoS3 Europe PMC3
  2002	Adelson, D., Hollis, D., & Brown, G. (2002). Wool fibre diameter and follicle density are not specified simultaneously during wool follicle initiation. Australian Journal of Agricultural Research, 53(9), 1003-1009. DOI Scopus15 WoS15
  2001	Maddox, J., Davies, K., Crawford, A., Hulme, D., Vaiman, D., Cribiu, E., . . . van Hest, B. (2001). An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Research, 11(7), 1275-1289. DOI Scopus222 WoS203 Europe PMC136
  2001	Koebbe, C. J., Horowitz, M., Levy, E. I., Adelson, D., & Jungries, C. (2001). Endovascular particulate and alcohol embolization for near-fatal epistaxis from a skull base vascular malformation. Pediatric Neurosurgery, 35(5), 257-261. DOI Scopus5 WoS5 Europe PMC3
  1998	Wessel, G. M., Berg, L., Adelson, D. L., Cannon, G., & McClay, D. R. (1998). A molecular analysis of hyalin - A substrate for cell adhesion in the hyaline layer of the sea urchin embryo. Developmental Biology, 193(2), 115-126. DOI Scopus67 WoS63 Europe PMC45
  1997	Adelson, D. L., Hollis, D. E., Merchant, J. C., & Kelley, B. A. (1997). In vivo effects of epidermal growth factor on epidermal pattern formation and hair follicle initiation in the marsupial bandicoot Isoodon macrourus. Reproduction, Fertility and Development, 9(5), 493-500. DOI Scopus6 WoS5 Europe PMC6
  1996	Nishimura, N., Cam, G. R., Nishimura, H., Tohyama, C., Saitoh, Y., & Adelson, D. L. (1996). Evidence for developmentally regulated transcriptional, translational and post-translational control of metallothionein gene expression in hair follicles. Reproduction, Fertility and Development, 8(7), 1089-1096. DOI Scopus7 WoS7 Europe PMC1
  1992	Adelson, D. L., Kelley, B. A., & Nagorcka, B. N. (1992). Increase in dermal papilla cells by proliferation during development of the primary wool follicle. Australian Journal of Agricultural Research, 43(4), 843-856. DOI Scopus17 WoS16
  1992	Campbell, M. T., Dollin, A. E., & Adelson, D. L. (1992). Differential lectin binding to presumptive cortical cells of the wool follicle bulb. Journal of Cell Science, 102(2), 353-360. DOI Scopus8 WoS7 Europe PMC5
  1992	Adelson, D. L., Alliegro, M. C., & McClay, D. R. (1992). On the ultrastructure of hyalin, a cell adhesion protein of the sea urchin embryo extracellular matrix. Journal of Cell Biology, 116(5), 1283-1289. DOI Scopus21 WoS21 Europe PMC10
  1991	ADELSON, D. L., MUNRO, S. G., & TUNKS, D. A. (1991). PERTURBATION OF WOOL FIBER CELL-DIFFERENTIATION BY A MIXTURE OF BROMODEOXYURIDINE AND FLUORODEOXYURIDINE. AUSTRALIAN JOURNAL OF AGRICULTURAL RESEARCH, 42(8), 1293-1300. DOI WoS2
  1988	Adelson, D. L., & Humphreys, T. (1988). Sea urchin morphogenesis and cell-hyalin adhesion are perturbed by a monoclonal antibody specific for hyalin. Development, 104(3), 391-402. DOI Scopus75 WoS70 Europe PMC44
  1985	Noll, H., Matranga, V., Cervello, M., Humphreys, T., Kuwasaki, B., & Adelson, D. (1985). Characterization of toposomes from sea urchin blastula cells: A cell organelle mediating cell adhesion and expressing positional information. Proceedings of the National Academy of Sciences of the United States of America, 82(23), 8062-8066. DOI Scopus53 WoS61 Europe PMC22
  1968	ADELSON, D., & MILLER, C. G. (1968). EDUCATION FOR POSITIVE MENTAL HEALTH - REVIEW OF EXISTING RESEARCH AND RECOMMENDATIONS FOR FUTURE STUDIES - DAVIS,JA. COMMUNITY MENTAL HEALTH JOURNAL, 4(1), 101-104.
  1967	ADELSON, D. (1967). URBAN CONDITION - DUHL,LJ. COMMUNITY MENTAL HEALTH JOURNAL, 3(4), 410-&.
  1966	ADELSON, D. (1966). TRAPPED - FAMILIES AND SCHIZOPHRENIA. AMERICAN JOURNAL OF MENTAL DEFICIENCY, 70(5), 797-&.
  1966	ADELSON, D. (1966). RECENT RESEARCH ON CREATIVE APPROACHES TO ENVIRONMENTAL STRESS - PROCEEDINGS OF 4TH INSTITUTE ON PREVENTIVE PSYCHIATRY - OJEMANN,RH. COMMUNITY MENTAL HEALTH JOURNAL, 2(1), 89-91.
  1962	ADELSON, D. (1962). SOME ASPECTS OF VALUE CONFLICT UNDER EXTREME CONDITIONS. PSYCHIATRY, 25(3), 273-279. DOI

• Book Chapters

  Year	Citation
  2023	Galbraith, J. D., Ivancevic, A. M., Qu, Z., & Adelson, D. L. (2023). Detecting Horizontal Transfer of Transposons. In M. R. Branco, & A. de Mendoza Soler (Eds.), Transposable Elements: Methods and Protocols (Vol. 2607, pp. 45-62). Springer US. DOI Scopus1
  2015	Adelson, D., Qu, Z., Raison, J., & Lim, S. (2015). Bovine Genomics. In D. Garrick, & A. Ruvinsky (Eds.), The Genetics of Cattle (2nd Edition ed., pp. 130-152). Wallingford, Oxfordshire, UK: CAB International.
  2015	Adelson, D. L., Buckley, R. M., Ivancevic, A. M., Qu, Z., & Zeng, L. (2015). Retrotransposons: Genomic and trans-genomic agents of change. In Evolutionary Biology: Biodiversification from Genotype to Phenotype (pp. 55-75). Springer International Publishing. DOI Scopus6
  2012	Adelson, D. (2012). Bovine genome architecture. In J. Womack (Ed.), Bovine Genomics (1 ed., pp. 123-140). United Kingdom: Wiley. DOI

• Conference Papers

  Year	Citation
  2015	Bharadwaj, V., Lifshitz, J., Adelson, D., Kodibagkar, V. D., & Stabenfeldt, S. E. (2015). EVALUATING THE POTENTIAL FOR NANOPARTICLE DELIVERY AFTER TRAUMATIC BRAIN INJURY. In JOURNAL OF NEUROTRAUMA Vol. 32 (pp. A25). Santa Fe, NM: MARY ANN LIEBERT, INC.
  2014	Spaite, D., Stolz, U., Bobrow, B., Chikani, V., Sherrill, D., Sotelo, M., . . . Denninghoff, K. (2014). Association between lowest pre-hospital systolic blood pressure and mortality in major traumatic brain injury: Is there a 'hypotension' threshold?. In BRAIN INJURY Vol. 28 (pp. 566-567). INFORMA HEALTHCARE.
  2014	Ling, K., Lee, H., Brautigan, P., Moore, S., Fraser, R., Cheah, P., . . . Scott, H. (2014). Deciphering the secret role of Sox4 gene locus during mouse cerebral corticogenesis. In Journal of Neurochemistry Vol. 130 (pp. 8). Kaohsiung, Taiwan: Wiley.
  2008	Satterfield, M., Song, G., Kochan, K., Riggs, P., Zhou, H., Elsik, C., . . . Spencer, T. (2008). Identification of progesterone-regulated genes governing pre-implantation conceptus growth and development. In BIOLOGY OF REPRODUCTION Vol. 78 (pp. 173). Kona, HI: SOC STUDY REPRODUCTION. DOI WoS1
  2007	Lewis, S., Farmer, J., Burghardt, R., Newton, G., Adelson, D., Bazer, F., & Spencer, T. (2007). Galectin-15 (LGALS15): A gene unique to sheep and goats?. In BIOLOGY OF REPRODUCTION Vol. 77 (pp. 155). San Antonio, TX: SOC STUDY REPRODUCTION. DOI WoS1
  2006	Lee, K. -H., Kim, S. -Y., Whang, E., & Lee, J. -G. (2006). A practitioner's approach to normalizing XQuery expressions. In M. L. Lee, K. L. Tan, & V. Wuwongse (Eds.), DATABASE SYSTEMS FOR ADVANCED APPLICATIONS, PROCEEDINGS Vol. 3882 (pp. 437-453). Singapore, SINGAPORE: SPRINGER-VERLAG BERLIN. WoS5
  2005	Dunlap, K. A., Hayashi, K., Adelson, D., Palmarini, M., & Spencer, T. E. (2005). Ovine endogenous betaretroviruses (enJSRVs) regulate conceptus growth and development.. In BIOLOGY OF REPRODUCTION (pp. 82). Ctr Rech Biol Reproduct, Quebec City, CANADA: SOC STUDY REPRODUCTION.
  2004	Meyer, J. K., Gray, A., Millimaki, R., Adelson, D. L., Thomas, T. L., & Spencer, T. E. (2004). Identification of a signal peptidase expressed exclusively by the uterine glands throughout pregnancy in the ewe. In BIOLOGY OF REPRODUCTION (pp. 149-150). Univ British Columbia, Vancouver, CANADA: SOC STUDY REPRODUCTION.
  2004	Gray, A., Meyer, J. K., Adelson, D. L., Bazer, F. W., Burghardt, R. C., & Spencer, T. E. (2004). Galectin-15 is the novel 14K progesterone-modulated protein from the uterus of sheep that forms crystalline inclusion bodies in endometrial epithelium and conceptus trophectoderm.. In BIOLOGY OF REPRODUCTION (pp. 93). Univ British Columbia, Vancouver, CANADA: SOC STUDY REPRODUCTION.
  2003	Gray, C. A., Abbey, C. A., Adelson, D. L., Thomas, T. L., & Spencer, T. E. (2003). Identification of endometrial factors regulating peri-implantation conceptus in the ewe.. In BIOLOGY OF REPRODUCTION Vol. 68 (pp. 333). CINCINNATI, OHIO: SOC STUDY REPRODUCTION.
  2003	Cam, G. R., Adelson, D. L., De Silva, U., & Franklin, I. R. (2003). Functional genomics of wool follicle initiation and development in merino sheep. In EXPERIMENTAL DERMATOLOGY Vol. 12 (pp. 227). MELBOURNE, AUSTRALIA: BLACKWELL MUNKSGAARD.
  2000	Franklin, I., Adelson, D., Cam, G., Sutton, R., & Van Hest, B. (2000). Discovering quality related genes. In ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES Vol. 13 (pp. 43). UNIV NEW S WALES, SYDNEY, AUSTRALIA: ASIAN-AUSTRALASIAN ASSOC ANIMAL PRODUCTION SOCIETIES. WoS1
  1999	Davidson, B. P., & Adelson, D. L. (1999). Growth factors and control of the hair cycle. In D. DyallSmith, & R. Marks (Eds.), DERMATOLOGY AT THE MILLENNIUM (pp. 699-705). SYDNEY, AUSTRALIA: PARTHENON PUBLISHING GROUP LTD.
  1999	Nishimura, H., Nishimura, N., Tohyama, C., Cam, G. R., & Adelson, D. L. (1999). Metallothionein expression during wool follicle development in foetal sheep. In C. D. Klaassen (Ed.), METALLOTHIONEIN IV (pp. 321-324). KANSAS CITY, MO: BIRKHAUSER VERLAG AG.
  1993	NAGORCKA, B. N., ADELSON, D. L., MOONEY, J. R., & KELLEY, B. A. (1993). PREDICTED AND OBSERVED SPATIAL PREPATTERNS IN (HAIR) WOOL FOLLICLE BULBS. In H. G. Othmer, P. K. Maini, & J. D. Murray (Eds.), EXPERIMENTAL AND THEORETICAL ADVANCES IN BIOLOGICAL PATTERN FORMATION Vol. 259 (pp. 255-266). UNIV OXFORD, MERTON COLL, OXFORD, ENGLAND: PLENUM PRESS DIV PLENUM PUBLISHING CORP.
  1992	LEVY, J. H., & ADELSON, D. (1992). EFFECTS OF VECURONIUM-INDUCED HISTAMINE N-METHYLTRANSFERASE INHIBITION ON CUTANEOUS RESPONSES TO HISTAMINE. In AGENTS AND ACTIONS (pp. C211-C212). MARBURG, GERMANY: BIRKHAUSER VERLAG AG.
  1992	NAGORCKA, B. N., & ADELSON, D. L. (1992). THE REACTION-DIFFUSION SYSTEM AS A DETERMINANT OF WOOL FIBER DIAMETER, FOLLICLE DENSITY AND FIBER DIAMETER DISTRIBUTION. In WOOL TECHNOLOGY AND SHEEP BREEDING Vol. 40 (pp. 47-51). GEELONG, AUSTRALIA: UNIV NEW SOUTH WALES. WoS4
  1981	HIMORI, T., OHNUMA, T., ADELSON, D., HOLLAND, J. F., & GOLDBERG, A. I. (1981). DIFFERENTIAL CELL KILLING AND TERMINAL DIFFERENTIATION (TD) OF A HUMAN ACUTE MYELOGENOUS LEUKEMIA-CELL LINE (HL-60) INVITRO. In PROCEEDINGS OF THE AMERICAN ASSOCIATION FOR CANCER RESEARCH Vol. 22 (pp. 262). AMER ASSOC CANCER RESEARCH.

• Conference Items

  Year	Citation
  2023	Tran, H., Chan, H. Y., Adelson, D. L., & Robertson, S. A. (2023). Seminal fluid histocompatibility antigens contribute to T cell priming after mating in mice. Poster session presented at the meeting of Society of Reproductive Biology. Brisbane.
  2019	Nourmohammadi, S., Nwe Aung, T., Cui, J., Pei, J., De leso, M., Qu, Z., . . . Yool, A. (2019). (Oral presentation) Systematic dissection of the molecular actions of compounds from traditional medicinal mixtures on the migration, invasion and apoptosis of brain, bowel and breast cancer cells. Poster session presented at the meeting of AuPS/ABS Meeting, Canberra, 2019.
  2019	Nourmohammadi, S., Yool, A., & Adelson, D. (2019). (Poster presentation) Natural Compounds as Potential Anti-metastatic Treatments for Brain, Bowel and Breast Cancer. Poster session presented at the meeting of Florey Postgraduate Conference.
  2018	Nourmohammadi, S., Nwe Aung, T., Yool, A., & Adelson, D. (2018). (Poster presentation) Fractional Deletion of Compound Kushen Injection, A Natural Compound Mixture, Indicates Cytokine Signaling Pathways Are Critical for Its Perturbation of The Cell Cycle. Poster session presented at the meeting of Florey Postgraduate Conference.
  2018	Nourmohammadi, S., Yool, A., & Adelson, D. (2018). (Poster presentation) Discovery of the Anti-metastasic Activity of a Chinese medicinal herb mixture 'Compound Kushen Injection' and Identification of the Active Components in Brain, Colon and Breast Cancer Cell Lines. Poster session presented at the meeting of Australian Society for Medical Research (ASMR).
  2017	Nourmohammadi, S., Pie, V. J., Kourghi, M., De leso, M. L., Pak, C., Adelson, D. L., & Yool, A. J. (2017). (Oral presentation) Analysis of effective compounds and mechanisms of action of a Chinese traditional herbal medicine (Compound Kushen Injection) on aquaporins involved in cancer cell migration and metastasis.. Poster session presented at the meeting of Gage Ion Channels and Transporters Conference. Canberra, Australia.
  2017	Cui, J., Qu, Z., Harata-Lee, Y., Shen, H., & Adelson, D. (2017). West meets east: A systems biology approach to the mechanistic understanding of traditional medicines. Poster session presented at the meeting of BIOCHEMICAL PHARMACOLOGY. Aberdeen, SCOTLAND: PERGAMON-ELSEVIER SCIENCE LTD. DOI
  2012	Ghosh, S., Das, P. J., Qu, Z., Fang, E., Arnold, C., Adelson, D. L., . . . Raudsepp, T. (2012). Array CGH Studies in Equine Disorders of Sexual Development - <i>SRY</i>-Positive Sex Reversal and Cryptorchidism. Poster session presented at the meeting of CYTOGENETIC AND GENOME RESEARCH. San Antonio, TX: KARGER.

• Internet Publications

  Year	Citation
  2020	Galbraith, J., Ludington, A., Suh, A., Sanders, K., & Adelson, D. (2020). New environment, new invaders - repeated horizontal transfer of LINEs to sea snakes. DOI
  2020	Galbraith, J., Ludington, A., Suh, A., Sanders, K., & Adelson, D. (2020). New environment, new invaders - repeated horizontal transfer of LINEs to sea snakes. DOI
  2017	Zeng, L., Pederson, S., Cao, D., Qu, Z., Hu, Z., Adelson, D., & Wei, C. (2017). Genome-wide analysis of the association of transposable elements with gene regulation suggests that<i>Alu</i>elements have the largest overall regulatory impact. DOI

• Preprint

  Year	Citation
  2024	Thawani, A., Rodríguez-Vargas, A., Van Treeck, B., Hassan, N. T., Adelson, D. L., Nogales, E., & Collins, K. (2024). Structures of vertebrate R2 retrotransposon complexes during target-primed reverse transcription and after second strand nicking.. DOI
  2024	Shen, H., Nourmohammadi, S., Zhou, Y., Harata-Lee, Y., Qu, Z., Wang, W., . . . Adelson, D. (2024). Validating the Target Functions and Synergistic Multi-Target, Multi-Pathway Action Mode of Compound Kushen Injection Using CRISPR/CAS. DOI
  2024	Shearwin-Whyatt, L., Fenelon, J., Yu, H., Major, A., Qu, Z., Zhou, Y., . . . Grützner, F. (2024). AMHY and sex determination in egg-laying mammals. DOI
  2024	Kalbfleisch, T., McKay, S., Murdoch, B., Adelson, D., Almansa, D., Becker, G., . . . Rosen, B. (2024). RT2T: A Global Collaborative Project to Study Chromosomal Evolution in the Suborder Ruminantia. DOI
  2024	Kalbfleisch, T., McKay, S., Murdoch, B., Adelson, D. L., Almansa, D., Becker, G., . . . Rosen, B. (2024). RT2T: A Global Collaborative Project to Study Chromosomal Evolution in the Suborder Ruminantia. DOI
  2022	Jarred, E., Qu, Z., Tsai, T., Oberin, R., Petautschnig, S., Bildsoe, H., . . . Western, P. (2022). Transient Polycomb activity represses developmental genes in growing oocytes. DOI

I teach third year Bioinformatics subjects and postgraduate coursework Bioinformatics.

• Current Higher Degree by Research Supervision (University of Adelaide)

  Date	Role	Research Topic	Program	Degree Type	Student Load	Student Name
  2023	Principal Supervisor	Implement a scalable, automated workflow for transposon annotation as part of the Ruminant T2T genome sequencing consortium	Doctor of Philosophy	Doctorate	Full Time	Miss Luan Zhong
  2023	Co-Supervisor	Identity of seminal fluid antigens driving expansion of the female adaptive immune response after mating	Doctor of Philosophy	Doctorate	Full Time	Mr Ha Manh Tran
  2022	Principal Supervisor	The Evolution, Distribution, and Activity of R2 Elements	Doctor of Philosophy	Doctorate	Full Time	Ms Nozhat Tabassum Hassan
  2022	Principal Supervisor	Molecular Mechanisms Associated With CKI Suppression Of Mucositis Caused By Radiotherapy	Doctor of Philosophy	Doctorate	Full Time	Mr Yan Zhou
  2022	Principal Supervisor	The Evolution of L1 and L2 Retrotransposons in Therian Mammals and Monotremes	Doctor of Philosophy	Doctorate	Full Time	Mr Alexander James Stuart
  2021	Co-Supervisor	Pharmacogenomic testing for psychiatric disorders will better align genotypes to well validated precision medicines.	Doctor of Philosophy	Doctorate	Full Time	Mr Kiflu Gebremicael Tesfamicael
  2021	Principal Supervisor	Genome Evolution and Retrotransposon Biology	Doctor of Philosophy	Doctorate	Full Time	Mr Zhenglong Du
  2021	Co-Supervisor	The Genetic Epidemiology of Hereditary Pancreatitis in Australia and its effects on patients of Total Pancreatectomy with Auto Islet Transplantation.	Doctor of Philosophy	Doctorate	Full Time	Mr Denghao Wu
  2019	Co-Supervisor	Investigating gene regulatory networks in neurodevelopmental disorders during embryonic development and adulthood.	Doctor of Philosophy	Doctorate	Full Time	Ms Urwah Nawaz
  2019	Principal Supervisor	Identification of Structural Variation with Long Reads	Doctor of Philosophy	Doctorate	Part Time	Carey Dessaix
  2018	Principal Supervisor	Structural variation in complex genomes	Doctor of Philosophy	Doctorate	Part Time	Dr Mani Ghani Poor Samami

• Past Higher Degree by Research Supervision (University of Adelaide)

  Date	Role	Research Topic	Program	Degree Type	Student Load	Student Name
  2021 - 2023	Co-Supervisor	Cross-Cultural Differences in Taste: The Effect of Individual Variation on Consumers’ Perceptual, Hedonic and Emotional Responses	Doctor of Philosophy under a Jointly-awarded Degree Agreement with	Doctorate	Full Time	Miss Gabriele Kavaliauskaite
  2019 - 2021	Co-Supervisor	The role of RNA modifications in Arabidopsis thaliana growth and development	Doctor of Philosophy	Doctorate	Full Time	Dr Pei Qin Ng
  2019 - 2024	Principal Supervisor	Detecting de novo Insertions of Transposable Elements in the Human Genome	Master of Philosophy	Master	Full Time	Mr Joseph McConnell
  2018 - 2023	Co-Supervisor	Aquaporins - from Ion Channels to Human Cancers	Doctor of Philosophy	Doctorate	Full Time	Mr Saeed Nourmohammadi
  2018 - 2020	Co-Supervisor	Transcriptome Analysis of Zebrafish Genetic Models to Reveal Early Molecular Drivers of Alzheimer's Disease	Doctor of Philosophy	Doctorate	Full Time	Miss Nhi Hin
  2017 - 2021	Principal Supervisor	The Evolution and Adaptive Effects of Transposable Elements in Birds and Elapids	Doctor of Philosophy	Doctorate	Full Time	Mr James Douglas Galbraith
  2017 - 2019	Principal Supervisor	Measuring genome wide changes in chromatin state using ChIP-seq	Master of Philosophy	Master	Full Time	Miss Catisha Leigh Coburn
  2016 - 2020	Co-Supervisor	Identification and functional analysis of RNA modifications in Arabidopsis thaliana and Mus musculus	Doctor of Philosophy	Doctorate	Full Time	Miss Jun Li
  2016 - 2021	Co-Supervisor	Sex and Parental Genome Effects on Bovine Fetal Development	Doctor of Philosophy	Doctorate	Full Time	Ms Cynthia Liu
  2015 - 2019	Principal Supervisor	Molecular Mechanisms of Natural Compounds: Compound Kushen Injection (CKI) in Cancer	Doctor of Philosophy	Doctorate	Full Time	Mrs Thazin Nwe Aung
  2015 - 2019	Principal Supervisor	Bioinformatics in Traditional Chinese Medicine (TCM): Potential Anti-Cancer Mechanisms of Compound Kushen Injection (CKI)	Doctor of Philosophy	Doctorate	Full Time	Mr Hanyuan Shen
  2015 - 2018	Principal Supervisor	Personalized Medicine Support System for Chronic Myeloid Leukaemia Patients	Doctor of Philosophy	Doctorate	Full Time	Mrs Haneen Reda M Banjar
  2014 - 2018	Principal Supervisor	The Impact of Transposable Elements on Amniote Evolution	Doctor of Philosophy	Doctorate	Full Time	Miss Lu Zeng
  2014 - 2018	Principal Supervisor	Research on Compound Kushen Injection (CKI): Anti-cancer Mechanism Pathway/Network structure	Doctor of Philosophy	Doctorate	Full Time	Mr Jian Cui
  2014 - 2017	Principal Supervisor	Jumping the Fine LINE Between Species: Horizontal Transfer and Evolution of Repetitive Elements in Eukaryotic Species	Doctor of Philosophy	Doctorate	Full Time	Dr Atma Maria Ivancevic
  2013 - 2017	Principal Supervisor	Evolution of mammalian genome architecture through retrotransposition	Doctor of Philosophy	Doctorate	Full Time	Reuben Mackenzie Buckley
  2012 - 2014	Principal Supervisor	Functional analysis of repeat regions in the eukaryotic genomes	Master of Philosophy under a Jointly-awarded Degree Agreement with	Master	Full Time	Miss Lu Zeng
  2011 - 2015	Co-Supervisor	Investigation and Application of Methods for Ancient DNA Research	Doctor of Philosophy	Doctorate	Full Time	Dr Steve Richards
  2010 - 2014	Principal Supervisor	Biomedical Literature Mining	Doctor of Philosophy	Doctorate	Full Time	Dr Mario Fruzangohar
  2010 - 2014	Principal Supervisor	Identification and Annotation of Recombinant Repeats In Mammals Indicates They Are Experimental Products For Creating Novel Transposable Element Families	Doctor of Philosophy	Doctorate	Full Time	Mr Sim Lin Lim
  2009 - 2015	Co-Supervisor	Investigating the evolution of replication timing and monoallelic expression in mammals and birds	Doctor of Philosophy	Doctorate	Full Time	Miss Megan Wright
  2009 - 2013	Co-Supervisor	Imprinted Gene Expression and Phenotype of Bovine Concepti with Bos taurus and Bos indicus Genetics	Doctor of Philosophy	Doctorate	Full Time	Dr Mani Ghani Poor Samami
  2009 - 2013	Co-Supervisor	Chloroplast DNAs Diversify Nuclear and Mitochondrial Genomes in Plants	Doctor of Philosophy	Doctorate	Full Time	Mr Dong Wang
  2008 - 2013	Principal Supervisor	Comprehensive Identification and Annotation of Non-Protein-Coding Transcriptomes from Vertebrates Indicates Most ncRNAs are Regulatory	Doctor of Philosophy	Doctorate	Full Time	Dr Zhipeng Qu
  2008 - 2014	Principal Supervisor	"Understanding the Apoptotic Signaling Pathway that Involve In Breast Cancer Using Microarray, Proteomics and Bioinformatics	Doctor of Philosophy	Doctorate	Full Time	Mr Ibrahim Oqla Alanazi

• Board Memberships

  Date	Role	Board name	Institution name	Country
  2012 - ongoing	Board Member	South Australian Museum Board	South Australian Museum	Australia

• Committee Memberships

  Date	Role	Committee	Institution	Country
  2017 - ongoing	Member	ABACBS Conference Committee	-	Australia

• Position: Professor
• Phone: 83137555
• Email: david.adelson@adelaide.edu.au
• Fax: 83134362
• Campus: North Terrace
• Building: Molecular Life Sciences, floor Second Floor
• Room: 210
• Org Unit: Molecular and Biomedical Science