Dr Theresa Cole

Research Fellow (B) (with PhD)

School of Biological Sciences

College of Science

Eligible to supervise Masters and PhD (as Co-Supervisor) - email supervisor to discuss availability.

Available For Media Comment.


I am an evolutionary biologist and molecular ecologist whose research focuses on how species adapt and persist in extreme environments, particularly Antarctica and the Southern Ocean. My work integrates genomics, palaeobiology, and ecology to understand evolutionary processes and inform conservation.
 
I currently hold a Ramsay Fellowship (2026–2030), where I reconstruct up to 50,000 years of Antarctic ecosystem change using sedimentary ancient DNA and geochemical analyses from ornithogenic deposits, including penguin and snow petrel guano and stomach oil. This research provides long-term insights into seabird diet, microbiomes, and population dynamics, and uses these records to model future ecological responses to environmental change.
 
My career pathway has been interdisciplinary and international, spanning research roles across Australia, Europe and New Zealand. After beginning in visual arts, I transitioned to conservation biology and completed my undergraduate and Honours degrees at Flinders University, followed by a PhD in penguin genomics through the University of Otago, and postdoctoral postions at Manaaki Whenua – Landcare Research, the University of Copenhagen and the University of Adelaide. I took 4-years away from my career to care for my two young children. I am passionate about supporting inclusive and flexible academic environments, particularly for students, early-career researchers, and those with caring responsibilities.
 
Please email me at theresa.cole@adelaide.edu.au for supervision for Hons, MSc or PhD research projects, or for research collaboration opportunities.

Antarctica

KEY RESEARCH INTERESTS

Conservation and management decisions for threatened Southern Hemisphere wildlife

One area that I am particularly focussed on is Antarctica, which currently has only one Marine Protected Area (the Ross Sea), and its protection is time-limited to 30 years. Several additional Marine Protected Areas have been proposed, but their establishment depends on complex international agreements. As the region faces increasing pressure from climate change and broader environmental impacts, there is a clear need for robust scientific evidence to inform conservation policy. This is the core target of my currently-held Ramsay Fellowship.

My research contributes to this effort by generating critical baseline data on species such as penguins and snow petrels, including genomic and geochemical techniques to better understand population size, diet, microbiome and their roles within wider ecosystem dynamics over time. These datasets are essential for defining what constitutes a healthy, functioning ecosystem and provide a scientific foundation for the design, implementation, and long-term monitoring of Marine Protected Areas. By integrating genomic, ecological, and longitudinal field data, my work helps bridge the gap between fundamental research and applied conservation outcomes in rapidly changing Antarctic environments.

Having grown up in Australia, I have long maintained a strong interest in Australian conservation, and now that I am based back in Adelaide, I am keen to contribute more actively to research and management efforts in this area. I have been involved in population genetics research on endangered freshwater fish in the Australian Murray–Darling Basin (as part of my Hons research), contributing to efforts aimed at understanding and conserving these vulnerable species within a highly impacted and variable ecosystem. I have also used genomics to assess invasive avian species management in South Australia.

Genomic adaptation to Antarctic climate and environmental change

My research has explored how seabirds have responded to past climate change, particularly for penguins, petrels and prions. Using population genomic and whole-genome datasets across multiple penguin species—particularly Antarctic and sub-Antarctic taxa within the genera Pygoscelis, Eudyptes, and Aptenodytes - I have identified patterns of refugia and subsequent recolonisation following the Last Glacial Maximum ~18,000 years ago. These processes were associated with rapid ecological shifts in both terrestrial and marine Southern Ocean environments as sea ice retreated and global temperatures rose.

Biogeography, speciation and phylogenomics of Southern Ocean assemblages

Using whole genomes and population genomic datasets, I have reconstructed the most comprehensive phylogenetic tree of penguins to date. This work revises the timing of key evolutionary events, demonstrates that Antarctic adaptations arose multiple times independently, and illuminates >50 million years of penguin biogeography. The study is highly collaborative, integrating morphological data from fossils with genomic evidence. I have also investigated speciation processes in penguins, showing that the emergence of volcanic islands around ~5 million years ago drove the diversification and splitting of many species, particularly within the Eudyptes genus. My work in population genomics has contributed to revising penguin systematics, particularly within the rockhopper complex and the macaroni/royal penguin group, helping to clarify species boundaries, evolutionary relationships and conservation decisions.

Comparative genomics and evolutionary biology of avifauna

I am particularly interested in how species evolve to adapt to their unique environments. Penguins provide a compelling example: they are remarkable animals, finely tuned to the extreme Antarctic environment, where survival depends on a suite of highly specialised physiological, morphological and behavioural traits. My highly collaborative research, using whole-genome analyses (as part of my postdoctoral research at the University of Copenhagen), has identified genes associated with key penguin-specific adaptations, including thermoregulation, underwater vision, diving capacity, taste perception, and osmoregulation.

These findings illustrate how strong environmental pressures can drive coordinated genetic changes across multiple biological systems. By integrating genomic data with ecological and functional perspectives, this work advances our understanding not only of which genes are involved, but also how they interact to produce complex adaptive traits. More broadly, it highlights the importance of linking molecular mechanisms with environmental context when interpreting the evolution of extreme specialisation in species such as penguins.

Southern Hemisphere extinctions, palaeoecology and species turnover

My research has led to the taxonomic description of two previously unrecognised penguin taxa (Eudyptes warhami and Megadyptes antipodes richdalei) from the New Zealand Chatham Islands, integrating ancient DNA analyses from both mitochondrial and whole genomes with detailed morphological approaches. By combining genetic and phenotypic evidence, this work provides a more comprehensive understanding of penguin diversity and evolutionary history in the region. I have also contributed to the description of other extinct avian and plant fauna from New Zealand and other Pacific islands.

Reconstructing what has been lost through extinction is critical for contemporary conservation, as it helps establish historical baselines and reveals the scale of biodiversity decline prior to modern monitoring. Such insights can inform more realistic conservation targets and improve our understanding of ecosystem resilience and function. In addition, I have contributed to research on other avifaunal extinctions, further expanding our knowledge of past biodiversity loss and its implications for present-day conservation strategies.

I have also been involved in a range of palaeoecological studies aimed at reconstructing past environments from significant sites in New Zealand, Chile, and Australia. In addition, I am engaged with the Australian Research Council Centre for Indigenous Environments, Histories and Futures, contributing to interdisciplinary research that connects environmental change with cultural and historical perspectives.

In Antarctica, my research has also contributed to understanding long-term ecosystem change and species turnover in the Ross Sea region. In particular, work integrating ancient DNA and ecological evidence has revealed a major shift in dominance from historical elephant seal populations to modern Adélie penguin populations. This transition reflects substantial reorganisation of marine vertebrate communities over time, likely driven by changing environmental and climate conditions and ecological interactions. These findings provide important context for interpreting present-day ecosystem structure and for anticipating how Antarctic communities may continue to respond to ongoing climate-driven change.

As part of my research, I have undertaken multiple field expeditions to Antarctic and sub-Antarctic regions, and cave sites around Australia and New Zealand. This includes a voyage to the New Zealand sub-Antarctic islands (Enderby, Antipodes and Campbell Island) with Heritage Expeditions supported by an Enderby Scholarship, as well as three expeditions to the Antarctic Ross Sea, through the NSF Early Career Research Program in Antarctic Biology and twice to remote coastlines of Antarctica through the New Zealand Ross RAMP programme.

Date Position Institution name
2026 - 2030 Ramsay Fellow/Lecturer Level B Adelaide University
2026 - 2026 Research Associate Adelaide University
2025 - 2026 Research Assistant The University of Adelaide
2020 - 2021 Postdoctoral Researcher University of Copenhagen
2019 - 2020 Postdoctoral Contractor Manaaki Whenua Landcare Research

Date Type Title Institution Name Country Amount
2019 Award First Prize Image Award Genetics Society of Australasia Australia -
2019 Achievement Exceptional Doctoral Thesis in the Division of Sciences The University of Otago New Zealand -
2019 Award Elizabeth Mason Prize The University of Otago New Zealand -
2019 Award D. G. Catcheside Prize Genetics Society of Australasia Australia -
2019 Scholarship The University of Otago Publishing Bursary The University of Otago New Zealand -
2016 Scholarship Enderby Scholarship Enderby Trust New Zealand -
2015 Scholarship The University of Otago Postgraduate Scholarship The University of Otago New Zealand -
2014 Scholarship Australian Postgraduate Award Curtin University Australia -
2014 Scholarship Curtin University Postgraduate top-up Scholarship Curtin University Australia -
2012 Scholarship AJ and IM Naylon Honours Scholarship Flinders University of South Australia Australia -
2012 Recognition Chancellors Letter of Commendation, Flinders University of South Australia Flinders University of South Australia Australia -
2011 Scholarship Flinders University Student Exchange Scholarship Flinders University of South Australia Australia -

Date Institution name Country Title
2015 - 2019 University of Otago New Zealand Doctor of Philosophy
2012 - 2012 Flinders University Australia Honours (1st Class) in Biodiversity and Conservation
2009 - 2011 Flinders University Australia Bachelor of Science in Biodiversity and Conservation

Year Citation
2026 Cole, T. L., de Graaf, L., Cassey, P., Andrews, L., Fielder, K., & Austin, J. (2026). Genetic analyses confirm multiple introductions of Red-whiskered Bulbuls in South Australia. Emu, 126(2), 214-226.
DOI
2025 Wood, J. R., Zhou, C., Cole, T. L., Coleman, M., Anderson, D. P., Lyver, P. O., . . . Zhang, G. (2025). Sedimentary DNA insights into Holocene Adélie penguin (Pygoscelis adeliae) populations and ecology in the Ross Sea, Antarctica.. Nat Commun, 16(1), 1798.
DOI Scopus2 WoS2 Europe PMC3
2025 Rawlence, N. J., Lubbe, P., Adams, A. L., Shepherd, L. D., Cole, T. L., Knapp, M., . . . Tennyson, A. J. D. (2025). Ancient DNA and morphometrics reveal a new species of extinct insular shelduck from Rēkohu Chatham Islands. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, 204(3), 16 pages.
DOI Scopus1 WoS1
2024 Rawlence, N. J., Verry, A. J. F., Cole, T. L., Shepherd, L. D., Tennyson, A. J. D., Williams, M., . . . Mitchell, K. J. (2024). Ancient mitogenomes reveal evidence for the Late Miocene dispersal of mergansers to the Southern Hemisphere. Zoological Journal of the Linnean Society, 202(4), 10 pages.
DOI Scopus4 WoS4
2023 Heenan, P. B., Smissen, R. D., Cole, T. L., & Wood, J. R. (2023). Plastid DNA sequence data of the extinct <i>Logania depressa</i> (Loganiaceae) from New Zealand confirm its generic placement. New Zealand Journal of Botany, 61(2-3), 191-199.
DOI Scopus1 WoS1
2022 Cole, T. L., Zhou, C., Fang, M., Pan, H., Ksepka, D. T., Fiddaman, S. R., . . . Zhang, G. (2022). Genomic insights into the secondary aquatic transition of penguins.. Nat Commun, 13(1), 13 pages.
DOI Scopus42 WoS39 Europe PMC30
2022 Heenan, P. B., Smissen, R. D., Cole, T. L., & Wood, J. R. (2022). Plastid DNA from the extinct Trilepidea adamsii confirms its close relationship to Alepis and Peraxilla (Loranthaceae). NEW ZEALAND JOURNAL OF BOTANY, 63(1), 8 pages.
DOI
2022 Masello, J. F., Ryan, P. G., Shepherd, L. D., Quillfeldt, P., Cherel, Y., Tennyson, A. J. D., . . . Moodley, Y. (2022). Independent evolution of intermediate bill widths in a seabird clade. Molecular Genetics and Genomics, 297(1), 183-198.
DOI Scopus11 WoS11
2022 Fiddaman, S. R., Vinkler, M., Spiro, S. G., Levy, H., Emerling, C. A., Boyd, A. C., . . . Smith, A. L. (2022). Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors. Molecular Biology and Evolution, 39(1), 17 pages.
DOI Scopus12 WoS12 Europe PMC12
2021 Frugone, M. J., Cole, T. L., López, M. E., Clucas, G., Matos-Maraví, P., Lois, N. A., . . . Vianna, J. A. (2021). Taxonomy based on limited genomic markers may underestimate species diversity of rockhopper penguins and threaten their conservation. Diversity and Distributions, 27(11), 2277-2296.
DOI Scopus10 WoS10
2021 Wood, J. R., Vermeulen, M. J., Bolstridge, N., Briden, S., Cole, T. L., Rivera-Perez, J., . . . Wilmshurst, J. M. (2021). Mid-Holocene coprolites from southern New Zealand provide new insights into the diet and ecology of the extinct little bush moa (Anomalopteryx didiformis). Quaternary Science Reviews, 263, 106992-1-106992-12.
DOI Scopus8 WoS8
2021 Seersholm, F. V., Grealy, A., McDowell, M. C., Cole, T. L., Arnold, L. J., Prideaux, G. J., & Bunce, M. (2021). Ancient DNA from bulk bone reveals past genetic diversity of vertebrate fauna on Kangaroo Island, Australia. Quaternary Science Reviews, 262, 1-9.
DOI Scopus12 WoS11
2021 De Pietri, V. L., Worthy, T. H., Scofield, R. P., Cole, T. L., Wood, J. R., Mitchell, K. J., . . . Wragg, G. M. (2021). A new extinct species of Polynesian sandpiper (Charadriiformes: Scolopacidae: Prosobonia) from Henderson Island, Pitcairn Group, and the phylogenetic relationships of Prosobonia. Zoological Journal of the Linnean Society, 192(4), 1045-1070.
DOI Scopus11 WoS10
2021 Wood, J. R., Burge, O. R., Bolstridge, N., Bonner, K., Clarkson, B., Cole, T. L., . . . Wilmshurst, J. M. (2021). Vertical distribution of prokaryotes communities and predicted metabolic pathways in New Zealand wetlands, and potential for environmental DNA indicators of wetland condition. PLoS ONE, 16(1 January), 1-20.
DOI Scopus4 WoS2 Europe PMC1
2020 Pilcher, N., Gaw, S., Eisert, R., Horton, T. W., Gormley, A. M., Cole, T. L., & Lyver, P. O. B. (2020). Latitudinal, sex and inter-specific differences in mercury and other trace metal concentrations in Adélie and Emperor penguins in the Ross Sea, Antarctica. Marine Pollution Bulletin, 154, 9 pages.
DOI Scopus19 WoS18 Europe PMC12
2020 Lescroël, A., Lyver, P. O. B., Jongsomjit, D., Veloz, S., Dugger, K. M., Kappes, P., . . . Ballard, G. (2020). Inter-individual differences in the foraging behavior of breeding Adélie penguins are driven by individual quality and sex. Marine Ecology Progress Series, 636, 189-205.
DOI Scopus17 WoS17
2020 Pan, H., Cole, T. L., Bi, X., Fang, M., Zhou, C., Yang, Z., . . . Zhang, G. (2020). Erratum: High-coverage genomes to elucidate the evolution of penguins (GigaScience (2019) 8:9 (giz117) DOI: 10.1093/gigascience/giz117). Gigascience, 9(3), 2 pages.
DOI WoS1
2019 Pan, H., Cole, T. L., Bi, X., Fang, M., Zhou, C., Yang, Z., . . . Zhang, G. (2019). High-coverage genomes to elucidate the evolution of penguins. Gigascience, 8(9), 17 pages.
DOI Scopus20 WoS18 Europe PMC19
2019 Cole, T. L., Dutoita, L., Dussex, N., Hart, T., Alexander, A., Younger, J. L., . . . Waters, J. M. (2019). Receding ice drove parallel expansions in Southern Ocean penguins. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(52), 26690-26696.
DOI WoS34
2019 Cole, T. L., Dutoit, L., Dussex, N., Hart, T., Alexander, A., Younger, J. L., . . . Waters, J. M. (2019). Receding ice drove parallel expansions in Southern Ocean penguins. Proceedings of the National Academy of Sciences of the United States of America, 116(52), 26690-26696.
DOI Scopus38 Europe PMC25
2019 Frugone, M. J., López, M. E., Segovia, N. I., Cole, T. L., Lowther, A., Pistorius, P., . . . Vianna, J. A. (2019). More than the eye can see: Genomic insights into the drivers of genetic differentiation in Royal/Macaroni penguins across the Southern Ocean. Molecular Phylogenetics and Evolution, 139, 12 pages.
DOI Scopus20 WoS22 Europe PMC13
2019 Masello, J. F., Quillfeldt, P., Sandoval-Castellanos, E., Alderman, R., Calderón, L., Cherel, Y., . . . Russo, C. (2019). Additive Traits Lead to Feeding Advantage and Reproductive Isolation, Promoting Homoploid Hybrid Speciation. Molecular Biology and Evolution, 36(8), 1671-1685.
DOI Scopus25 WoS22 Europe PMC13
2019 Rawlence, N. J., Tennyson, A. J. D., Cole, T. L., Verry, A. J. F., & Scofield, R. P. (2019). Evidence for breeding of Megadyptes penguins in the North Island at the time of human arrival. New Zealand Journal of Zoology, 46(2), 165-173.
DOI Scopus4 WoS4
2019 Cole, T. L., Ksepka, D. T., Mitchell, K. J., Tennyson, A. J. D., Thomas, D. B., Pan, H., . . . Waters, J. M. (2019). Mitogenomes uncover extinct penguin taxa and reveal island formation as a key driver of speciation. Molecular Biology and Evolution, 36(4), 784-797.
DOI Scopus39 WoS41 Europe PMC28
2019 Díaz, F. P., Latorre, C., Carrasco-Puga, G., Wood, J. R., Wilmshurst, J. M., Soto, D. C., . . . Gutiérrez, R. A. (2019). Multiscale climate change impacts on plant diversity in the Atacama Desert. Global Change Biology, 25(5), 1733-1745.
DOI Scopus65 WoS53 Europe PMC30
2018 Cole, T. L., Rawlence, N. J., Dussex, N., Ellenberg, U., Houston, D. M., Mattern, T., . . . Waters, J. M. (2018). Ancient DNA of crested penguins: Testing for temporal genetic shifts in the world's most diverse penguin clade. Molecular Phylogenetics and Evolution, 131, 72-79.
DOI Scopus11 WoS11 Europe PMC7
2018 Cole, T. L., Waters, J. M., Shepherd, L. D., Rawlence, N. J., Joseph, L., & Wood, J. R. (2018). Ancient DNA reveals that the 'extinct' Hunter Island penguin (Tasidyptes hunteri) is not a distinct taxon. Zoological Journal of the Linnean Society, 182(2), 459-464.
DOI Scopus11 WoS11
2018 Heenan, P. B., Wood, J. R., & Cole, T. L. (2018). A partial cpDNA trnL sequence from the extinct legume Streblorrhiza speciosa confirms its placement in the tribe Coluteae (Fabaceae). Phytotaxa, 374(1), 87-91.
DOI Scopus3 WoS2
2018 Cole, T. L., & Wood, J. R. (2018). The ancient DNA revolution: the latest era in unearthing New Zealand’s faunal history. New Zealand Journal of Zoology, 45(2), 91-120.
DOI Scopus10 WoS11
2018 Seersholm, F. V., Cole, T. L., Grealy, A., Rawlence, N. J., Greig, K., Knapp, M., . . . Bunce, M. (2018). Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey. Proceedings of the National Academy of Sciences of the United States of America, 115(30), 7771-7776.
DOI Scopus70 WoS65 Europe PMC26
2016 Cole, T., Hammer, M., Unmack, P., Teske, P., Brauer, C., Adams, M., & Beheregaray, L. (2016). Range-wide fragmentation in a threatened fish associated with post-European settlement modification in the Murray-Darling Basin, Australia. Conservation Genetics, 17(6), 1377-1391.
DOI Scopus30 WoS29
2016 Wood, J. R., Crown, A., Cole, T. L., & Wilmshurst, J. M. (2016). Microscopic and ancient DNA profiling of Polynesian dog (kurī) coprolites from northern New Zealand. Journal of Archaeological Science: Reports, 6, 496-505.
DOI Scopus27 WoS25
2015 Moodley, Y., Masello, J. F., Cole, T. L., Calderon, L., Munimanda, G. K., Thali, M. R., . . . Quillfeldt, P. (2015). Evolutionary factors affecting the cross-species utility of newly developed microsatellite markers in seabirds. Molecular Ecology Resources, 15(5), 1046-1058.
DOI Scopus24 WoS23 Europe PMC14
  • Adelaide University EMCR Travel Fund 2026 - AUD$7500 for networking at Durham University, Australia.

  • World Seabird Conference Travel Grant 2026 - USD$600 to attend the World Seabird Conference 4, Hobart, Australia.

  • Ramsay Fellowship 2026 - 48 month fellowship for “Sentinels of change: probing the past lives of Antarctic seabirds to understand the resilience of cold ecosystems in a warming world” at Adelaide University.

  • Graduate Women SA (GWSA) Postdoctoral Grant 2025 - AUD$5000 to attend the 2026 International Penguin Congress and to visit sample collections in Hobart.

  • Adelaide University SET Early-Mid Career Research Grant 2025 - AUD$10,000 for project funding “Ancient DNA from snow petrel mumiyo: a new window into past marine ecosystems of Antarctica.

  • Marie Skłodowska-Curie Individual Fellowship 2020 - 24 months [EUR€219,312.00] funding for “From the sky to the sea: genomic insights into the evolution, diversification and adaptation of modern penguins” at the University of Copenhagen) – declined due to pandemic travel restrictions and parental commitments.

  • University of Otago Postgraduate Conference Grant 2019 - NZD$2000 to attend the Genetics Society of Australia conference, Melbourne, Australia.

  • Otago Community Trust Grant 2019 - NZD$520 to attend the 10th International Penguin Conference, Dunedin, New Zealand.

  • Birds New Zealand Research Fund Award 2017 - NZD$3000 for project funding “Population genomics of New Zealand crested penguins”.

  • Royal Society of New Zealand Hutton Fund Award 2017 - NZD$1000 for project funding “Cold birds in a warming world: Adaptation of subantarctic crested penguins to climate change”.

  • Alumni of the University of Otago in America Research Fund 2016 - NZD$3000 for project funding “Ancient and modern genetics of Eudyptes [crested penguins]”.

  • Otago University Ecology Trust Fund 2016 - NZD$200 to attend the 10th Oamaru Penguin Symposium, Oamaru, New Zealand.

  • Australasian Seabird Group Grant 2016 NZD$500 stipend.

  • Genetics 3: I support the delivery of echidna metagenomics lab sessions (2025)
  • Principles and Practice of Research - Advanced: Guest lecturer and mentor (2026)
  • Current Topics in Medical Research: Guest lecturer and mentor (2026)

Date Role Committee Institution Country
2026 - ongoing Representative Early and Mid-Career Researchers within the College of Science Adelaide University Australia
2026 - ongoing Co-Chair School of Biological Sciences Early Mid Career Researcher Association (EMCRA) Adelaide University Australia
2017 - 2017 Council Conference of Australasian Vertebrate Evolution, Palaeontology and Systematics Organising Committee Member New Zealand

Date Role Membership Country
2026 - ongoing Member The Biology Society of South Australia Australia
2025 - ongoing Member Environment Institute Australia
2020 - ongoing Member IUCN Penguin Specialist Group Australia

Date Event Name Event Type Institution Country
2018 - 2018 NSF Early-Career Advanced Training Workshop in Antarctic Biology Workshop United States National Science Foundation Antarctica

Date Title Type Institution Country
2025 - ongoing Australian Journal of Zoology Editorial Australian Journal of Zoology -

Date Title URL Description
2026 - 2030 Ramsay Fellowship - Sentinels of change: probing the past lives of Antarctic seabirds to understand the resilience of cold ecosystems in a warming world
2020 - 2020 Marie Skłodowska-Curie Individual Fellowship - From the sky to the sea: genomic insights into the evolution, diversification and adaptation of modern penguins – declined due to pandemic travel restrictions and parental commitments.

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