Dr Julien Soubrier

ARC Postdoctoral Research Associate

School of Biological Sciences

Faculty of Sciences, Engineering and Technology

Career
Publications
Supervision
Contact

Appointments

Date	Position	Institution name
2016 - ongoing	Genome informatician	SA Pathology
2012 - 2016	ARC Research Associate	The University of Adelaide
2008 - 2009	Forensic technician	Institut National de Police Scientifique (INPS)

Language Competencies

Language Competency

English Can read, write, speak, understand spoken and peer review

French Can read, write, speak, understand spoken and peer review

Language	Competency
English	Can read, write, speak, understand spoken and peer review
French	Can read, write, speak, understand spoken and peer review

Education

Date	Institution name	Country	Title
2009 - 2012	The University of Adelaide	Australia	PhD
2006 - 2008	Claude Bernard University Lyon 1	France	Master's degree in Functional Genomics and Oncology
2004 - 2006	Claude Bernard University Lyon 1	France	Bachelor's degree in Biology of Organisms and Populations

Journals

Year	Citation
2021	Leong, L. E. X., Soubrier, J., Turra, M., Denehy, E., Walters, L., Kassahn, K., . . . Lim, C. K. (2021). Whole-genome sequencing of sars-cov-2 from quarantine hotel outbreak. Emerging Infectious Diseases, 27(8), 2219-2221. DOI Scopus3 WoS1 Europe PMC3
2018	Feigin, C., Newton, A., Doronina, L., Schmitz, J., Hipsley, C., Mitchell, K., . . . Pask, A. (2018). Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore. Nature Ecology and Evolution, 2(1), 182-192. DOI Scopus41 WoS41 Europe PMC28
2017	Onar, V., Soubrier, J., Toker, N., van Loenen, A., Llamas, B., Siddiq, A., . . . Tokarska, M. (2017). Did the historical range of the European bison (Bison bonasus L.) extend further south? - a new finding from the Yenikapı Metro and Marmaray excavation, Turkey. Mammal Research, 62(1), 103-109. DOI Scopus3 WoS3
2017	Weyrich, L., Duchene, S., Soubrier, J., Arriola, L., Llamas, B., Breen, J., . . . Cooper, A. (2017). Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature, 544(7650), 357-361. DOI Scopus228 WoS212 Europe PMC107
2017	Tobler, R., Rohrlach, A., Soubrier, J., Bover Arbos, P., Llamas, B., Tuke, J., . . . Cooper, A. (2017). Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia. Nature, 544(7649), 180-184. DOI Scopus96 WoS93 Europe PMC33
2016	Llamas, B., Fehren-Schmitz, L., Valverde, G., Soubrier, J., Mallick, S., Rohland, N., . . . Haak, W. (2016). Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Science Advances, 2(4), e1501385-1-e1501385-10. DOI Scopus193 WoS182 Europe PMC75
2016	Cruz-Dávalos, D. I., Llamas, B., Gaunitz, C., Fages, A., Gamba, C., Soubrier, J., . . . Orlando, L. (2016). Experimental conditions improving in-solution target enrichment for ancient DNA. Molecular Ecology Resources, 17(3), 508-522. DOI Scopus45 WoS36 Europe PMC17
2016	Soubrier, J., Gower, G., Chen, K., Richards, S., Llamas, B., Mitchell, K., . . . Cooper, A. (2016). Early cave art and ancient DNA record the origin of European bison. Nature Communications, 7(1), 13158-1-13158-7. DOI Scopus57 WoS59 Europe PMC19
2014	Clarke, L., Czechowski, P., Soubrier, J., Stevens, M., & Cooper, A. (2014). Modular tagging of amplicons using a single PCR for high-throughput sequencing. Molecular Ecology Resources, 14(1), 117-121. DOI Scopus26 WoS26 Europe PMC15
2014	Sheng, G., Soubrier, J., Liu, J., Werdelin, L., Llamas, B., Thomson, V., . . . Cooper, A. (2014). Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta. Molecular Ecology, 23(3), 522-533. DOI Scopus27 WoS23 Europe PMC9
2014	Mitchell, K., Llamas, B., Soubrier, J., Rawlence, N., Worthy, T., Wood, J., . . . Cooper, A. (2014). Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution. Science, 344(6186), 898-900. DOI Scopus179 WoS172 Europe PMC84
2014	Der Sarkissian, C., Brotherton, P., Balanovsky, O., Templeton, J., Llamas, B., Soubrier, J., . . . Genographic Consortium. (2014). Mitochondrial genome sequencing in mesolithic North East Europe unearths a new sub-clade within the broadly distributed human haplogroup C1. PLoS One, 9(2), e87612-1-e87612-10. DOI Scopus15 WoS7 Europe PMC9
2014	Clarke, L., Soubrier, J., Weyrich, L., & Cooper, A. (2014). Environmental metabarcodes for insects: In silico PCR reveals potential for taxonomic bias. Molecular Ecology Resources, 14(6), 1160-1170. DOI Scopus191 WoS185 Europe PMC37
2013	Lee, M., Soubrier, J., & Edgecombe, G. (2013). Rates of phenotypic and genomic evolution during the Cambrian explosion. Current Biology, 23(19), 1889-1895. DOI Scopus103 WoS96 Europe PMC57
2013	Brotherton, P., Haak, W., Templeton, J., Soubrier, J., Adler, C., Richards, S., . . . Cooper, A. (2013). Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nature Communications, 4(1764), 1-11. DOI Scopus148 WoS139 Europe PMC81
2013	Austin, J., Soubrier, J., Prevosti, F., Prates, L., Trejo, V., Mena, F., & Cooper, A. (2013). The origins of the enigmatic Falkland Islands wolf. Nature Communications, 4(1), 1-7. DOI Scopus39 WoS33 Europe PMC11
2013	Templeton, J., Brotherton, P., Llamas, B., Soubrier, J., Haak, W., Cooper, A., & Austin, J. (2013). DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification. Investigative Genetics, 4(26), 1-13. DOI Scopus76 Europe PMC38
2012	Soubrier, J., Steel, M., Lee, M., Dersarkissian, C., Guindon, S., Ho, S., & Cooper, A. (2012). The influence of rate heterogeneity among sites on the time dependence of molecular rates. Molecular Biology and Evolution, 29(11), 3345-3358. DOI Scopus120 WoS121 Europe PMC76
2011	Aplin, K., Suzuki, H., Chinen, A., Chesser, R., ten Have, J., Donnellan, S., . . . Cooper, A. (2011). Multiple geographic origins of commensalism and complex dispersal history of black rats. PLoS One, 6(11), 1-20. DOI Scopus196 WoS183 Europe PMC88
2011	Ho, S., Lanfear, R., Bromham, L., Phillips, M., Soubrier, J., Rodrigo, A., & Cooper, A. (2011). Time-dependent rates of molecular evolution. Molecular Ecology, 20(15), 3087-3101. DOI Scopus371 WoS366 Europe PMC250
	Gower, G., Tuke, J., Rohrlach, A. B., Soubrier, J., Llamas, B., Bean, N., & Cooper, A. (n.d.). Population size history from short genomic scaffolds: how short is too short?. DOI
	van Loenen, A. L., Hofman-Kamińska, E., Mitchell, K. J., Llamas, B., Bocherens, H., Soubrier, J., . . . Cooper, A. (n.d.). Untangling the Evolutionary History of European Bison (<i>Bison bonasus</i>). DOI

Conference Papers

Year	Citation
2022	Sanchez, L., Douglas, E., Lawrence, D., Soubrier, J., Gao, S., McGregor, L., . . . Friend, K. (2022). Mosaicism: challenges for next-generation sequencing analysis. In EUROPEAN JOURNAL OF HUMAN GENETICS Vol. 30 (pp. 474). SPRINGERNATURE.

Conference Items

Year	Citation
2019	Fletcher, J., Brion, K., Douglas, E., Dubowsky, A., Friend, K., Geoghagan, J., . . . Kassahn, K. (2019). Outcome of genomic testing in in South Australia: detection rate is not the same for all (virtual) panels. Poster session presented at the meeting of EUROPEAN JOURNAL OF HUMAN GENETICS. Gothenburg, SWEDEN: NATURE PUBLISHING GROUP.
2015	Miller, C., Franks, C., Breen, J., Weyrich, L., Soubrier, J., Llamas, B., . . . Cooper, A. (2015). Open access to ancient human DNA: An Australian Centre for Ancient DNA (ACAD) and University Libraries collaboration. Poster session presented at the meeting of Proceedings of eResearch Australasia 2016. Brisbane, Australia: eResearch Australasia.
2013	Haak, W., Brotherton, P., Templeton, J., Brandt, G., Soubrier, J., Adler, C. J., . . . Cooper, A. (2013). Neolithic human mitochondrial haplogroup H genomes and the genetic origins of Europeans. Poster session presented at the meeting of AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. Knoxville, TN: WILEY-BLACKWELL.

Past Higher Degree by Research Supervision (University of Adelaide)

Date	Role	Research Topic	Program	Degree Type	Student Load	Student Name
2013 - 2015	Co-Supervisor	Methodological Challenges To Study The Nuclear Evolutionary History Of An Ancient Bison Species	Master of Philosophy	Master	Full Time	Oliver Lomax-James Wooley

Position: ARC Postdoctoral Research Associate
Phone: 83135565
Email: julien.soubrier@adelaide.edu.au
Fax: 83134364
Campus: North Terrace
Building: Darling, floor 2
Org Unit: Ecology and Evolutionary Biology

Dr Julien Soubrier

Appointments

Language Competencies

Education

Journals

Conference Papers

Conference Items

Past Higher Degree by Research Supervision (University of Adelaide)

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