Journals

Year	Citation
2018	Feigin, C., Newton, A., Doronina, L., Schmitz, J., Hipsley, C., Mitchell, K., . . . Pask, A. (2018). Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore. Nature Ecology and Evolution, 2(1), 182-192. DOI Scopus4 WoS4 Europe PMC4
2017	Onar, V., Soubrier, J., Toker, N., van Loenen, A., Llamas, B., Siddiq, A., . . . Tokarska, M. (2017). Did the historical range of the European bison (Bison bonasus L.) extend further south? - a new finding from the Yenikapı Metro and Marmaray excavation, Turkey. Mammal Research, 62(1), 103-109. DOI
2017	Tobler, R., Rohrlach, A., Soubrier, J., Bover, P., Llamas, B., Tuke, J., . . . Cooper, A. (2017). Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia. Nature, 544(7649), 180-184. DOI Scopus28 WoS22 Europe PMC11
2017	Weyrich, L., Duchene, S., Soubrier, J., Arriola, L., Llamas, B., Breen, J., . . . Cooper, A. (2017). Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature, 544(7650), 357-361. DOI Scopus52 WoS44 Europe PMC26
2016	Cruz-Dávalos, D., Llamas, B., Gaunitz, C., Fages, A., Gamba, C., Soubrier, J., . . . Orlando, L. (2016). Experimental conditions improving in-solution target enrichment for ancient DNA. Molecular Ecology Resources, Online(3), 1-15. DOI Scopus15 WoS9 Europe PMC6
2016	Soubrier, J., Gower, G., Chen, K., Richards, S., Llamas, B., Mitchell, K., . . . Cooper, A. (2016). Early cave art and ancient DNA record the origin of European bison. Nature Communications, 7, 13158-1-13158-7. DOI Scopus20 WoS16 Europe PMC4
2016	Llamas, B., Fehren-Schmitz, L., Valverde, G., Soubrier, J., Mallick, S., Rohland, N., . . . Haak, W. (2016). Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Science Advances, 2(4), e1501385-1-e1501385-10. DOI Scopus75 WoS70 Europe PMC38
2014	Clarke, L., Czechowski, P., Soubrier, J., Stevens, M., & Cooper, A. (2014). Modular tagging of amplicons using a single PCR for high-throughput sequencing. Molecular Ecology Resources, 14(1), 117-121. DOI Scopus13 WoS16 Europe PMC12
2014	Mitchell, K., Llamas, B., Soubrier, J., Rawlence, N., Worthy, T., Wood, J., . . . Cooper, A. (2014). Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution. Science, 344(6186), 898-900. DOI Scopus97 WoS86 Europe PMC53
2014	Sheng, G., Soubrier, J., Liu, J., Werdelin, L., Llamas, B., Thomson, V., . . . Cooper, A. (2014). Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta. Molecular Ecology, 23(3), 522-533. DOI Scopus19 WoS16 Europe PMC7
2014	Clarke, L., Soubrier, J., Weyrich, L., & Cooper, A. (2014). Environmental metabarcodes for insects: In silico PCR reveals potential for taxonomic bias. Molecular Ecology Resources, 14(6), 1160-1170. DOI Scopus75 WoS69 Europe PMC7
2014	Der Sarkissian, C., Brotherton, P., Balanovsky, O., Templeton, J., Llamas, B., Soubrier, J., . . . Genographic Consortium. (2014). Mitochondrial genome sequencing in mesolithic North East Europe unearths a new sub-clade within the broadly distributed human haplogroup C1. PLoS One, 9(2), e87612-1-e87612-10. DOI Scopus12 WoS4 Europe PMC8
2013	Lee, M., Soubrier, J., & Edgecombe, G. (2013). Rates of phenotypic and genomic evolution during the Cambrian explosion. Current Biology, 23(19), 1889-1895. DOI Scopus64 WoS56 Europe PMC39
2013	Brotherton, P., Haak, W., Templeton, J., Soubrier, J., Adler, C., Richards, S., . . . Cooper, A. (2013). Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nature Communications, 4(1764), 1-11. DOI Scopus97 WoS83 Europe PMC60
2013	Austin, J., Soubrier, J., Prevosti, F., Prates, L., Trejo, V., Mena, F., & Cooper, A. (2013). The origins of the enigmatic Falkland Islands wolf. Nature Communications, 4(1), 1-7. DOI Scopus27 WoS18 Europe PMC6
2013	Templeton, J., Brotherton, P., Llamas, B., Soubrier, J., Haak, W., Cooper, A., & Austin, J. (2013). DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification. Investigative Genetics, 4(26), 1-13. DOI Scopus43 Europe PMC21
2012	Soubrier, J., Steel, M., Lee, M., Dersarkissian, C., Guindon, S., Ho, S., & Cooper, A. (2012). The influence of rate heterogeneity among sites on the time dependence of molecular rates. Molecular Biology and Evolution, 29(11), 3345-3358. DOI Scopus41 WoS38 Europe PMC31
2011	Aplin, K., Suzuki, H., Chinen, A., Chesser, R., ten Have, J., Donnellan, S., . . . Cooper, A. (2011). Multiple geographic origins of commensalism and complex dispersal history of black rats. PLoS One, 6(11), 1-20. DOI Scopus114 WoS98 Europe PMC57
2011	Ho, S., Lanfear, R., Bromham, L., Phillips, M., Soubrier, J., Rodrigo, A., & Cooper, A. (2011). Time-dependent rates of molecular evolution. Molecular Ecology, 20(15), 3087-3101. DOI Scopus261 WoS260 Europe PMC188

Conference Items

Year	Citation
2015	Miller, C., Franks, C., Breen, J., Weyrich, L., Soubrier, J., Llamas, B., . . . Cooper, A. (2015). Open access to ancient human DNA: An Australian Centre for Ancient DNA (ACAD) and University Libraries collaboration. Poster session presented at the meeting of Proceedings of eResearch Australasia 2016. Brisbane, Australia: eResearch Australasia.

Current Higher Degree by Research Supervision (University of Adelaide)

Date	Role	Research Topic	Program	Degree Type	Student Load	Student Name
2015	Co-Supervisor	Evolution of North American Bison	Doctor of Philosophy	Doctorate	Full Time	Ms Lindsey Erin Fenderson

Past Higher Degree by Research Supervision (University of Adelaide)

Date	Role	Research Topic	Program	Degree Type	Student Load	Student Name
2013 - 2015	Co-Supervisor	Methodological Challenges To Study The Nuclear Evolutionary History Of An Ancient Bison Species	Master of Philosophy	Master	Full Time	Oliver Lomax-James Wooley