Fiona Whelan

Dr Fiona Whelan

Grant-Funded Researcher (B)

Research Infrastructure and Platforms

Division of Research and Innovation

Eligible to supervise Masters and PhD - email supervisor to discuss availability.


Previously based at the University of York, UK, my research is focused on the structural biology of viral and bacterial nucleic acid binding proteins; Staphylococcal cell surface adhesins and two-component sensors. I use methods including bioinformatics, structure prediction, molecular biology, bacterial recombinant protein expression and purification, X-ray crystallography and small angle X-ray scattering to determine the relationship between the structure and the function of target proteins. Having relocated to the University of Adelaide, I have been developing the use of cryo electron microscopy in analysis of bacteriophage transcriptional regulators.

I am now engaged in protein engineering to develop a pipeline for directed evolution of novel small molecule binding proteins based on natural bacterial two-component sensor systems, transcription factors and enzymes. We aim to select for new sensor/small molecule binding by building bacterial circuitry to diversify and modulate sensor activation. This synthetic biology approach is anticipated to provide the foundation for development of a small molecule binding protein library able to specifically detect the presence of target molecules for deployment in diverse industries including medical diagnostics, food security, biomonitoring and bioremediation. This work is supported by the Ramsay Fellowship in Applied Science and an ARC discovery project, commenced 2023.

In press: PhD candidate Alix Harlington is the driving force behind this study into the structure, specificity and green chemistry catalytic potential of this unique P450 enzyme, SyoA, a S-lignin-derived monolignol specific O-demethylase. Published online 20th Feb, 2025.

And for the story behind the paper, head to Research Communities.

  • Appointments

    Date Position Institution name
    2019 - ongoing Ramsay Fellow in Applied Science University of Adelaide
    2018 - 2019 Postdoctoral Research Associate University of Adelaide
    2012 - 2018 Postdoctoral Research Associate University of York
    2009 - 2012 Postdoctoral Research Associate University of York
  • Education

    Date Institution name Country Title
    2003 - 2009 University of Adelaide Australia PhD
    2002 - 2002 University of Adelaide Australia B.Sc. Hons. (Biochemistry)
    1998 - 2001 University of Adelaide Australia B.Sc. (Mol. Biol.)
  • Certifications

    Date Title Institution name Country
    2020 ADEPT Introduction to University Teaching University of Adelaide -
    2019 Epigeum: Supervising Doctoral Studies University of Adelaide -

ARC Discovery Project

Whelan, Shearwin and Potts

Title: Discovery and directed evolution of small molecule biosensors

2023–2026

Total Awarded: $522,724

AWRI/University of Adelaide Collaborative Research Fund

Title: Predicting wine haze potential

2023

Total Awarded: $30,000

 

Research Roadmap grant scheme

Title: Biodegradation of Plastics via Bioengineered Enzyme Systems

September 2021 – December 2022

Total Awarded: $50,000

 

Agrifood and Wine FAME Strategy internal grant

Title: Pesticide biosensors for viticulture and winemaking industries

August 2021 – December 2022

Total Awarded: $20,000

 

Sandland Bequest

Title: Pesticide biosensor development and hybrid device integration for agricultural and environmental analytics

May 2021 — Dec 2022

Total Awarded: $25,000

 

Wine Australia top-up scholarship

Title: Engineering biosensors for smoke taint

February 2021—2024

Total awarded: $49,509

 

Wine Australia top-up scholarship

Title: Engineering biosensors for wine spoilage

February 2021—2024

Total awarded $49,509

 

Biochemistry Trust Fund

Title: Evolution of bespoke small molecule in-cell sensors

Oct 2020 — Dec 2021

Total awarded: $27,000

 

Ramsay Fellowship in Applied Science 

Title: Making bacteria sense what they've never seen

Nov 2019 — Nov 2023

Total awarded: $459,282

 

Travel Award

Australian Microscopy and Microanalysis Society – June 2019

CRYOZ 2019 2nd AMMS Cryo EM symposium (June 5—7, 2019)

Total awarded $800

 

Lecturer – Microbiology II – B.Sc. 2nd Year cohort – 1 lecture, Semester 1 2022-2024

Molecular and Biomedical Science, University of Adelaide

Lecturer – Cancer, Stem cells and Development/Biochemistry III – B.Sc. 3rd Year cohort – 3 lectures, 3 tutorials, Semester 1/2, 2020-2024

Molecular and Biomedical Science, University of Adelaide

 

Lecturer – Advanced Research Platforms – M.Sc (Biotechnology) – 1 lecture, Semester 1, 2020-2024

Molecular and Biomedical Science, University of Adelaide

 

Journal Club Organiser/Assessor, B.Sc. (Honours) – 2019, 2020

Molecular and Biomedical Science, University of Adelaide

 

Thesis examiner, M.Sc (Biotechnology) – 2019, 2020

Molecular and Biomedical Science, University of Adelaide

 

Examiner - B.Sc.(Hons.) Research Proposal - 2020

Molecular and Biomedical Science, University of Adelaide

 

Laboratory supervisor – PhD (2), Undergraduate (7), 2010—2018

Dept. of Chemistry and Biology Department, University of York

 

Student mentoring – PhD (4), Undergraduate (2), 2008—2019

Molecular and Biomedical Science, University of Adelaide; Dept. of Chemistry and Biology Department, University of York

  • Current Higher Degree by Research Supervision (University of Adelaide)

    Date Role Research Topic Program Degree Type Student Load Student Name
    2025 Co-Supervisor Exploring Cold-Adapted Cytochrome P450 Enzymes from Psychrophilic Organisms: Production, Characterization, and Biotechnological Applications. Doctor of Philosophy Doctorate Full Time Miss Rabia Mehmood
    2025 Co-Supervisor Study of bacteriophage protein structures for the production of improved antimicrobial
    agents
    Doctor of Philosophy Doctorate Full Time Ms Sarah Jayne Eisemann
    2023 Co-Supervisor Characterization and Structural Study of Cytochrome P450 enzymes from thermophilic bacteria Doctor of Philosophy Doctorate Full Time Mr Tuhin Das
    2022 Co-Supervisor Engineering small molecule binding proteins as novel biosensors Doctor of Philosophy Doctorate Full Time Mr Alix Charles Harlington
    2021 Co-Supervisor Engineering biosensors for wine spoilage Doctor of Philosophy Doctorate Part Time Mr Ranjith Manjula Meemanage Cebreco
  • Past Higher Degree by Research Supervision (University of Adelaide)

    Date Role Research Topic Program Degree Type Student Load Student Name
    2019 - 2024 Co-Supervisor Development of the PHEARLESS system and its application for directed protein mutagenesis and characterisation of putative endolysin activity Doctor of Philosophy Doctorate Full Time Miss Hannah Rose Bonham
  • Other Supervision Activities

    Date Role Research Topic Location Program Supervision Type Student Load Student Name
    2020 - ongoing Principal Supervisor Isolating bacteriophage host binding and infection machinery University of Adelaide Masters of Biotechnology Master Full Time Diva Sinha
    2017 - ongoing Other Thermal unfolding of tandem repeat protein domains University of York - Doctorate Full Time Rachael Cooper
    2016 - 2016 Co-Supervisor mutagenesis, protein expression, purification and crystallisation of mutant adhesin domains from Staphylococcal surface adhesins SasG and Aap University of York B.Sc. Research Project Other Part Time Nicholas Butler
    2015 - 2018 Other Structural and biophysical analysis of tandem repeat domains of Gram-positive bacteria University of York - Doctorate Full Time Lotte Van Beek
    2015 - 2015 Other Cloning and purification of human Cip1 interacting zinc finger protein University of York B.Sc. Research Project Other Part Time Caroline Pearson
    2012 - 2012 Other Supervision of lab work and manuscript preparation resulting in a peer reviewed publication on a human tRNA modifying enzyme. Samuel went on to be awarded a competitive and highly prestigious Wellcome Trust funded scholarship to study on the Oxford PhD program University of York B.Sc. Research Project Other Part Time Samuel Griffiths
  • Position: Grant-Funded Researcher (B)
  • Phone: 83135362
  • Email: fiona.whelan@adelaide.edu.au
  • Campus: North Terrace
  • Building: Molecular Life Sciences, floor 2
  • Org Unit: School of Biological Sciences

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