Dr Erinne Stirling

Technical Officer

School of Agriculture, Food and Wine

College of Science


Erinne is a CERC Postdoctoral Fellow at CSIRO Agriculture and Food working within the Valuing Sustainability Future Science Platform on molecular monitoring of soil health and carbon use efficiency.

Date Position Institution name
2022 - ongoing CERC Postdoctoral Fellow Commonwealth Scientific and Industrial Research Organisation
2019 - 2022 Postdoctoral Fellow Zhejiang University

Date Institution name Country Title
2015 - 2019 The University of Adelaide Australia Doctor of Philosophy
2013 - 2014 Flinders University Australia Master of Environmental Policy and Management
2009 - 2012 The University of Adelaide Australia Bachelor of Science (Natural Resources)
2009 - 2012 The University of Adelaide Australia Bachelor of Environmental Policy and Management

Year Citation
2025 Li, Z., Qin, W., You, Y., Chen, J., Zhao, X., Dong, R., . . . Xue, R. (2025). Land use patterns change N and P cycling bacterial diversity in an acidic karst soil. Agriculture, Ecosystems and Environment, 380, 109389.
DOI Scopus4
2025 Matthews, K. E., Breed, M. F., Stirling, E., Macdonald, L. M., & Cavagnaro, T. R. (2025). Comparing apples and apples; evaluating the impact of conventional and organic management on the soil microbial communities of apple orchards. Applied Soil Ecology, 215, 106470.
DOI Scopus1 WoS1
2024 Wang, B., Ma, B., Zhang, Y., Stirling, E., Yan, Q., He, Z., . . . Zhang, H. (2024). Global diversity, coexistence and consequences of resistome in inland waters.. Water Res, 253, 121253.
DOI Scopus11 WoS11 Europe PMC7
2024 Xue, R., Stirling, E., Zhao, K., Wang, Y., Ye, S., Xu, J., & Ma, B. (2024). Putting cell size into perspective: Soil bacterial diversity and predictive function. Geoderma, 443, 116804.
DOI Scopus3 WoS3
2024 Ma, B., Wang, Y., Zhao, K., Stirling, E., Lv, X., Yu, Y., . . . Xu, J. (2024). Biogeographic patterns and drivers of soil viromes.. Nature ecology & evolution, 8(4), 717-728.
DOI Scopus54 WoS53 Europe PMC36
2024 Liu, Y., Zhao, K., Stirling, E., Wang, X., Gao, Z., Ma, B., . . . Wang, D. (2024). Heterosis of endophytic microbiomes in hybrid rice varieties improves seed germination. mSystems, 9(5), 18 pages.
DOI Scopus11 WoS12 Europe PMC5
2023 Dai, H., Zhuang, Y., Stirling, E., Liu, N., & Ma, B. (2023). Microfluidic hotspots in bacteria research: A review of soil and related advances. Soil Ecology Letters, 5(1), 21-37.
DOI Scopus3 WoS3
2023 Wang, B., Ma, B., Stirling, E., He, Z., Zhang, H., & Yan, Q. (2023). Freshwater trophic status mediates microbial community assembly and interdomain network complexity. Environmental Pollution, 316(Pt 1), 9 pages.
DOI Scopus23 WoS22 Europe PMC10
2023 Xue, R., Liu, S., Stirling, E., Wang, Y., Zhao, K., Matsumoto, H., . . . Ma, B. (2023). Core community drives phyllosphere bacterial diversity and function in multiple ecosystems.. The Science of the total environment, 896, 1-8.
DOI Scopus16 WoS13 Europe PMC7
2023 Wang, B., Xu, J., Wang, Y., Stirling, E., Zhao, K., Lu, C., . . . Ma, B. (2023). Tackling Soil ARG-Carrying Pathogens with Global-Scale Metagenomics.. Advanced science (Weinheim, Baden-Wurttemberg, Germany), 10(26), e2301980.
DOI Scopus28 Europe PMC15
2022 Song, X., Li, Y., Stirling, E., Zhao, K., Wang, B., Zhu, Y., . . . Ma, B. (2022). AsgeneDB: A curated orthology arsenic metabolism gene database and computational tool for metagenome annotation. NAR Genomics and Bioinformatics, 4(4).
DOI Scopus18
2022 Xu, P., Stirling, E., Xie, H., Li, W., Lv, X., Matsumoto, H., . . . Xu, J. (2022). Continental scale deciphering of microbiome networks untangles the phyllosphere homeostasis in tea plant. Journal of Advanced Research, 44, 13-22.
DOI Scopus36 Europe PMC20
2022 Zhao, K., Yu, H., Xue, R., Stirling, E., Wang, Y., Xu, J., & Ma, B. (2022). The only constant is change: Endogenous circadian rhythms of soil microbial activities. Soil Biology and Biochemistry, 173, 108805.
DOI Scopus10 WoS7
2022 Liu, Y., Chu, G., Stirling, E., Zhang, H., Chen, S., Xu, C., . . . Wang, D. (2022). Nitrogen fertilization modulates rice seed endophytic microbiomes and grain quality.. The Science of the total environment, 857(Pt 2), 159181.
DOI Scopus33 WoS32 Europe PMC17
2021 Ma, B., Stirling, E., Liu, Y., Zhao, K., Zhou, J., Singh, B. K., . . . Xu, J. (2021). Soil Biogeochemical Cycle Couplings Inferred from a Function-Taxon Network. Research (Washington), 2021, 10 pages.
DOI Scopus74 WoS70 Europe PMC27
2021 Zhao, K., Ma, B., Xu, Y., Stirling, E., & Xu, J. (2021). Light exposure mediates circadian rhythms of rhizosphere microbial communities.. The ISME journal, 15(9), 2655-2664.
DOI Scopus66 WoS63 Europe PMC47
2021 Xue, R., Zhao, K., Yu, X., Stirling, E., Liu, S., Ye, S., . . . Xu, J. (2021). Deciphering sample size effect on microbial biogeographic patterns and community assembly processes at centimeter scale. Soil Biology and Biochemistry, 156, 108218.
DOI Scopus26 WoS24
2021 Liu, H., Xue, R., Wang, Y., Stirling, E., Ye, S., Xu, J., & Ma, B. (2021). Correction to: FACS‑iChip: a high‑efficiency iChip system for microbial ‘dark matter’ mining (Marine Life Science & Technology, (2021), 3, 2, (162-168), 10.1007/s42995-020-00067-7). Marine Life Science and Technology, 3(2), 276-277.
DOI
2021 Wang, B., Stirling, E., He, Z., Ma, B., Zhang, H., Zheng, X., . . . Yan, Q. (2021). Pollution alters methanogenic and methanotrophic communities and increases dissolved methane in small ponds.. The Science of the total environment, 801, 149723.
DOI Scopus23 WoS22 Europe PMC8
2021 Liu, Y., Ma, B., Chen, W., Schlaeppi, K., Erb, M., Stirling, E., . . . Xu, J. (2021). Rhizobium Symbiotic Capacity Shapes Root-Associated Microbiomes in Soybean. Frontiers in Microbiology, 12, 709012.
DOI Scopus25 WoS24 Europe PMC16
2020 Ma, B., Wang, Y., Ye, S., Liu, S., Stirling, E., Gilbert, J. A., . . . Xu, J. (2020). Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome, 8(1), 12 pages.
DOI Scopus428 WoS415 Europe PMC259
2020 Stirling, E., Fitzpatrick, R. W., & Mosley, L. M. (2020). Drought effects on wet soils in inland wetlands and peatlands. Earth-Science Reviews, 210, 1-15.
DOI Scopus70 WoS61
2020 Liu, H., Xue, R., Wang, Y., Stirling, E., Ye, S., Xu, J., & Ma, B. (2020). FACS-iChip: a high-efficiency iChip system for microbial ‘dark matter’ mining. Marine Life Science & Technology, 3(2), 162-168.
DOI Scopus21 WoS22 Europe PMC16
2020 Xu, P., Stirling, E., Li, W., Lv, X., Chen, H., Xu, A., . . . Xu, J. (2020). Trade-off between stochastic and deterministic processes shifts from soil to leaf microbiome of tea plant.
DOI
2019 Stirling, E., Macdonald, L. M., Smernik, R. J., & Cavagnaro, T. R. (2019). Post fire litters are richer in water soluble carbon and lead to increased microbial activity. Applied Soil Ecology, 136, 101-105.
DOI Scopus17 WoS15
2019 Stirling, E., Smernik, R. J., Macdonald, L. M., & Cavagnaro, T. R. (2019). The effect of fire affected Pinus radiata litter and char addition on soil nitrogen cycling. Science of the Total Environment, 664, 276-282.
DOI Scopus8 WoS8 Europe PMC3
2019 Stirling, E., Smernik, R. J., Macdonald, L. M., & Cavagnaro, T. R. (2019). Fire influences needle decomposition: tipping point in Pinus radiata carbon chemistry and soil nitrogen transformations. Soil Biology and Biochemistry, 135, 361-368.
DOI Scopus4 WoS4
2019 Stirling, E., Macdonald, L. M., Smernik, R. J., & Cavagnaro, T. R. (2019). Soil Microbial Community Responses After Amendment with Thermally Altered Pinus radiata Needles. Microbial Ecology, 79(2), 409-419.
DOI Scopus2 WoS1 Europe PMC1
2017 Barr, C., Tibby, J., Moss, P., Halverson, G., Marshall, J., McGregor, G., & Stirling, E. (2017). A 25,000-year record of environmental change from Welsby Lagoon, North Stradbroke Island, in the Australian subtropics. Quaternary International, 449, 106-118.
DOI Scopus21 WoS20
- Szetey, K., Ward, D., Chakori, S., Douglas, D., Fulton, E. A., Grigg, N., . . . Subramaniam, R. (2025). Applying an ethical lens for more responsible modelling practice. Socio-Environmental Systems Modelling, 7, 18753.
DOI

Year Citation
- Stirling, E. (n.d.). Laboratory analyses data set.
DOI
- Stirling, E. (n.d.). Post fire litters are richer in water soluble carbon and lead to increased microbial activity.
DOI
- Stirling, E. (n.d.). Fire influences needle decomposition: tipping point in Pinus radiata carbon chemistry and soil nitrogen transformations.
DOI
- Stirling, E. (n.d.). The effect of fire affected Pinus radiata litter and char addition on soil nitrogen cycling.
DOI
- Stirling, E., Cavagnaro, T., & Smernik, R. (n.d.). Soil microbial community responses after amendment with thermally altered Pinus radiata needles.
DOI

Date Role Committee Institution Country
2015 - ongoing Member Soil Science Australia - South Australia Branch Australian Soil Science Society Inc. Australia

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