| 2021 |
Galbraith, J., Kortschak, D., Suh, A., & Adelson, D. (2021). Genome stability is in the eye of the beholder: recent retrotransposon activity varies significantly across avian diversity.
DOI |
| 2020 |
Cui, J., Qu, Z., Harata-Lee, Y., Shen, H., Aung, T. N., Wang, W., . . . Adelson, D. L. (2020). The effect of compound kushen injection on cancer cells: Integrated identification of candidate molecular mechanisms. PLoS ONE, 15(7 July), 18 pages.
DOI Scopus1 WoS1 Europe PMC1 |
| 2020 |
Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., . . . Edmonds, H. (2020). The tuatara genome reveals ancient features of amniote evolution. Nature, 584(7821), 403-409.
DOI Scopus20 WoS23 Europe PMC11 |
| 2020 |
Gemmell, N., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J., . . . Edmonds, H. (2020). Publisher Correction: The tuatara genome reveals ancient features of amniote evolution (Nature, (2020), 584, 7821, (403-409), 10.1038/s41586-020-2561-9). Nature, 585(7823), E3.
DOI |
| 2019 |
Shen, H., Qu, Z., Harata-Lee, Y., Aung, T. N., Cui, J., Wang, W., . . . Adelson, D. L. (2019). Understanding the mechanistic contribution of herbal extracts in compound Kushen injection with transcriptome analysis. Frontiers in Oncology, 9(JULY), 632-1-632-11.
DOI Scopus2 WoS2 |
| 2019 |
Aung, T. N., Nourmohammadi, S., Qu, Z., Harata-Lee, Y., Cui, J., Shen, H. Y., . . . Adelson, D. L. (2019). Fractional deletion of Compound Kushen Injection indicates cytokine signaling pathways are critical for its perturbation of the cell cycle. Scientific Reports, 9(1), 14200-1-14200-16.
DOI |
| 2019 |
Shen, H., Qu, Z., Harata-Lee, Y., Cui, J., Aung, T. N., Wang, W., . . . Adelson, D. L. (2019). A new strategy for identifying mechanisms of drug-drug interaction using transcriptome analysis: Compound Kushen Injection as a proof of principle. Scientific Reports, 9(1), 15889-1-15889-12.
DOI Scopus1 WoS1 |
| 2019 |
David, R., Kortschak, R. D., & Searle, I. (2019). The root hair defective phenotype of Arabidopsis thaliana Pol IV subunit mutant nrpd1a-3 is associated with a deletion in RHD6. microPublication Biology, 2019, 1-4.
DOI Europe PMC1 |
| 2019 |
Gemmell, N., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, R., . . . Board, N. T. (2019). The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order.
DOI |
| 2019 |
Shen, H., Qu, Z., Harata-Lee, Y., Cui, J., Aung, T. N., Wang, W., . . . Adelson, D. (2019). A new strategy for identifying mechanisms of drug-drug interaction using transcriptome analysis: Compound Kushen injection as a proof of principle.
DOI |
| 2019 |
Shen, H., Qu, Z., Harata-Lee, Y., Aung, T. N., Cui, J., Wang, W., . . . Adelson, D. (2019). Understanding the Mechanistic Contribution of Herbal Extracts in Compound Kushen Injection with Transcriptome Analysis.
DOI Europe PMC1 |
| 2018 |
Zeng, L., Pederson, S., Kortschak, D., & Adelson, D. (2018). Transposable elements and gene expression during the evolution of amniotes.
DOI |
| 2018 |
Aung, T. N., Nourmohammadi, S., Qu, Z., Harata-Lee, Y., Cui, J., Shen, H. Y., . . . Adelson, D. L. (2018). Fractional Deletion Of Compound Kushen Injection, A Natural Compound Mixture, Indicates Cytokine Signaling Pathways Are Critical For Its Perturbation Of The Cell Cycle.
DOI Europe PMC1 |
| 2018 |
Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., . . . Reich, D. (2018). A comprehensive genomic history of extinct and living elephants. Proceedings of the National Academy of Sciences of the United States of America, 115(11), 2566-2574.
DOI Scopus60 WoS58 Europe PMC31 |
| 2018 |
Zeng, L., Kortschak, R., Raison, J., Bertozzi, T., & Adelson, D. (2018). Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies. PLoS ONE, 13(3), 1-17.
DOI Scopus6 WoS6 Europe PMC7 |
| 2018 |
Buckley, R. M., Kortschak, R. D., & Adelson, D. L. (2018). Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.. PLoS computational biology, 14(4), e1006091.
DOI Scopus1 |
| 2018 |
Daniel Kortschak, R. (2018). arrgh: a Go interface to the OpenCPU R server system. The Journal of Open Source Software, 3(21), 517.
DOI |
| 2018 |
Zeng, L., Pederson, S., Kortschak, R., & Adelson, D. (2018). Transposable elements and gene expression during the evolution of amniotes. Mobile DNA, 9(1), 17-1-17-9.
DOI Scopus10 WoS11 Europe PMC7 |
| 2018 |
Ivancevic, A., Kortschak, R., Bertozzi, T., & Adelson, D. (2018). Horizontal transfer of BovB and L1 retrotransposons in eukaryotes. Genome Biology, 19(1), 13 pages.
DOI Scopus27 WoS27 Europe PMC16 |
| 2017 |
Ivancevic, A., Daniel Kortschak, R., Bertozzi, T., & Adelson, D. (2017). Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species.
DOI |
| 2017 |
Kortschak, R., Pedersen, B., & Adelson, D. (2017). bíogo/hts: high throughput sequence handling for the Go language. The Journal of Open Source Software, 2(10), 168-1.
DOI |
| 2017 |
Kortschak, R., Snyder, J., Maragkakis, M., & Adelson, D. (2017). bíogo: a simple high-performance bioinformatics toolkit for the Go language. The Journal of Open Source Software, 2(10), 1.
DOI |
| 2017 |
Daniel Kortschak, R., & L Adelson, D. (2017). bíogo/ncbi: interfaces to NCBI services for the Go language. The Journal of Open Source Software, 2(13), 234.
DOI |
| 2017 |
Buckley, R., Kortschak, R., Raison, J., & Adelson, D. (2017). Similar evolutionary trajectories for retrotransposon accumulation in mammals. Genome Biology and Evolution, 9(9), 2336-2353.
DOI Scopus12 WoS11 Europe PMC8 |
| 2017 |
Aung, T., Qu, Z., Kortschak, R., & Adelson, D. (2017). Understanding the effectiveness of natural compound mixtures in cancer through their molecular mode of action. International Journal of Molecular Sciences, 18(3), 20 pages.
DOI Scopus118 WoS106 Europe PMC56 |
| 2017 |
Buckley, R., Kortschak, D., & Adelson, D. (2017). Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.
DOI |
| 2017 |
Zeng, L., Kortschak, D., Raison, J., Bertozzi, T., & Adelson, D. (2017). Superior ab initio Identification, Annotation and Characterisation of TEs and Segmental Duplications from Genome Assemblies.
DOI |
| 2016 |
Buckley, R., Kortschak, D., Raison, J., & Adelson, D. (2016). Similar evolutionary trajectories for retrotransposon accumulation in mammals.
DOI |
| 2016 |
Ivancevic, A., Kortschak, D., Bertozzi, T., & Adelson, D. (2016). LINES between species: Evolutionary dynamics of LINE-1 retrotransposons across the eukaryotic tree of life.
DOI |
| 2016 |
Qu, Z., Cui, J., Harata-Lee, Y., Thazin Nwe Aung, T., Feng, Q., Raison, J., . . . Adelson, D. (2016). Identification of candidate anti-cancer molecular mechanisms of compound kushen injection using functional genomics. Oncotarget, 7(40), 66003-66019.
DOI Scopus41 WoS39 Europe PMC24 |
| 2016 |
Ivancevic, A., Kortschak, R., Bertozzi, T., & Adelson, D. (2016). LINEs between species: evolutionary dynamics of LINE-1 retrotransposons across the eukaryotic tree of life. Genome Biology and Evolution, 8(11), 3301-3322.
DOI Scopus28 WoS25 Europe PMC23 |
| 2015 |
Lim, S. L., Qu, Z. P., Kortschak, R. D., Lawrence, D. M., Geoghegan, J., Hempfling, A. -L., . . . O'Bryan, M. K. (2015). Correction: HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse.. PLoS genetics, 11(12), e1005782.
DOI Europe PMC3 |
| 2015 |
Lim, S., Qu, Z., Kortschak, R., Lawrence, D., Geoghegan, J., Hempfling, A., . . . O'Bryan, M. (2015). HENMT1 and piRNA stability are required for adult male germ cell transposon repression and to define the spermatogenic program in the mouse. PLoS Genetics, 11(10), e1005620-1-e1005620-30.
DOI Scopus52 WoS46 Europe PMC38 |
| 2014 |
Kortschak, D., & Adelson, D. (2014). bíogo: a simple high-performance bioinformatics toolkit for the Go language.
DOI Europe PMC1 |
| 2014 |
Lim, S., Kortschak, R., & Adelson, D. (2014). Discovery of a novel long terminal repeat (LTR2i-SS) in Sus Scrofa. Animal Genetics, 45(3), 367-372.
DOI |
| 2013 |
Lim, S., Tsend-Ayush, E., Kortschak, R., Jacob, R., Ricciardelli, C., Oehler, M., & Grutzner, F. (2013). Conservation and expression of piRNA pathway genes in male and female adult gonad of amniotes. Biology of Reproduction, 89(6), 1-13.
DOI Scopus20 WoS21 Europe PMC14 |
| 2013 |
Ivancevic, A., Walsh, A., Kortschak, R., & Adelson, D. (2013). Jumping the fine LINE between species: Horizontal transfer of transposable elements in animals catalyses genome evolution. Bioessays, 35(12), 1071-1082.
DOI Scopus37 WoS32 Europe PMC27 |
| 2013 |
Kitto, K., & Kortschak, R. (2013). Contextual models and the non-Newtonian paradigm. Progress in Biophysics & Molecular Biology, 113(1), 97-107.
DOI Scopus8 WoS7 Europe PMC1 |
| 2013 |
Roberts, N., Kortschak, R., Parker, W., Schreiber, A., Branford, S., Scott, H., . . . Adelson, D. (2013). A comparative analysis of algorithms for somatic SNV detection in cancer. Bioinformatics, 29(18), 2223-2230.
DOI Scopus61 WoS60 Europe PMC52 |
| 2013 |
Walsh, A., Kortschak, R., Gardner, M., Bertozzi, T., & Adelson, D. (2013). Widespread horizontal transfer of retrotransposons. Proceedings of the National Academy of Sciences of the United States of America, 110(3), 1012-1016.
DOI Scopus83 WoS80 Europe PMC63 |
| 2012 |
Tsend-Ayush, E., Kortschak, R., Bernard, P., Lim, S., Ryan, J., Rosenkranz, R., . . . Grutzner, F. (2012). Identification of mediator complex 26 (Crsp7) gametologs on platypus X1 and Y5 sex chromosomes: a candidate testis-determining gene in monotremes?. Chromosome Research, 20(1), 127-138.
DOI Scopus6 WoS6 Europe PMC4 |
| 2009 |
Kortschak, R., Tsend-Ayush, E., & Grutzner, F. (2009). Analysis of SINE and LINE repeat content of Y chromosomes in the platypus, Ornithorhynchus anatinus. Reproduction Fertility and Development, 21(8), 964-975.
DOI Scopus9 WoS9 Europe PMC7 |
| 2007 |
Tucker, B., Hepperle, C., Kortschak, R., Rainbird, B., Wells, S., Oates, A., & Lardelli, M. (2007). Zebrafish Angiotensin II receptor-like 1a (agtrl1a) is expressed in migrating hypoblast, vasculature, and in multiple embryonic epithelia. Gene Expression Patterns, 7(3), 258-265.
DOI Scopus24 WoS25 Europe PMC22 |
| 2003 |
Kortschak, R., Samuel, G., Saint, R., & Miller, D. (2003). EST analysis of the Cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Current Biology, 13(24), 2190-2195.
DOI Scopus281 WoS276 Europe PMC217 |
| 2003 |
Camp-Dotlic, E., Hope, R., Kortschak, R., Cox, T., & Lardelli, M. (2003). Expression of three spalt (sal) gene homologues in zebrafish embryos. Development Genes and Evolution, 213(1), 35-43.
DOI Scopus21 WoS20 Europe PMC18 |
| 2002 |
Shandala, T., Kortschak, R., & Saint, R. (2002). The Drosophila retained/dead ringer gene and ARID gene family function during development. International Journal of Developmental Biology, 46(4 Special Issue SI), 423-430.
Scopus14 WoS15 Europe PMC6 |
| 2002 |
Kortschak, R. D., Tamme, R., & Lardelli, M. (2002). Erratum: Evolutionary analysis of vertebrate Notch genes (Development Genes and Evolution (2001) vol. 211 (350-354)). Development Genes and Evolution, 212(3), 158.
DOI |
| 2001 |
Holland, L., Rached, L., Tamme, R., Holland, N., Inoko, H., Kortschak, R., . . . Lardelli, M. (2001). Characterization and developmental expression of the amphioxus homolog of Notch (AmphiNotch): Evolutionary conservation of multiple expression domains in amphioxus and vertebrates. Developmental Biology, 232(2), 493-507.
DOI Scopus49 WoS47 Europe PMC33 |
| 2001 |
Kortschak, R., Tamme, R., & Lardelli, M. (2001). Evolutionary analysis of vertebrate Notch genes. Development Genes and Evolution, 211(7), 350-354.
DOI Scopus27 WoS29 Europe PMC23 |
| 2000 |
Tamme, R., Camp-Dotlic, E., Kortschak, R., & Lardelli, M. (2000). Non-specific, nested suppression PCR method for isolation of unknown flanking DNA. Biotechniques, 28(5), 895-902.
DOI Scopus9 WoS8 Europe PMC6 |
| 2000 |
Kortschak, R., Tucker, P., & Saint, R. (2000). ARID proteins come in from the desert. Trends in Biochemical Sciences, 25(6), 294-299.
DOI Scopus133 WoS132 Europe PMC93 |
| 1999 |
Shandala, T., Kortschak, R., Gregory, S., & Saint, R. (1999). The Drosophila dead ringer gene is required for early embryonic patterning through regulation of argos and buttonhead expression. Development, 126(19), 4341-4349.
Scopus35 WoS36 Europe PMC22 |
| 1998 |
Kortschak, R., Reimann, H., Zimmer, M., Eyre, H., Saint, R., & Jenne, D. (1998). The human dead ringer/bright homolog, DRIL1: cDNA cloning, gene structure, and mapping to D19S886, a marker on 19p13.3 that is strictly linked to the Peutz-Jeghers Syndrome.. Genomics, 51(2), 288-292.
DOI Scopus23 WoS25 Europe PMC15 |
| 1996 |
Gregory, S., Kortschak, R., Kalionis, B., & Saint, R. (1996). Characterization of the dead ringer Gene Identifies a Novel, Highly Conserved Family of Sequence-Specific DNA-Binding Proteins. Molecular and Cellular Biology, 16(3), 792-799.
DOI Scopus130 WoS129 Europe PMC93 |
