School of Biological Sciences
Faculty of Sciences, Engineering and Technology
Eligible to supervise Masters and PhD - email supervisor to discuss availability.
Vertebrate vision has long fascinated evolutionary biologists and is a celebrated example of the power of integrative biology. As an evolutionary biologist I have quickly become fascinated by the evolution of vision. My research focus is the application of molecular methods to the evolution of vision in a very ecological diverse and evolutionary plastic group of vertebrates - squamate reptiles. In 2016 I was awarded a European Union Marie Skłodowska-Curie Global Fellowship at the University of Bristol (UK) and the University of Adelaide. Under this fellowship, I complement transcriptomics and comparative genomics with physiology and anatomical approaches to assess visual phenotypic diversity and the molecular mechanisms that underpin this sensory in snakes and lizards.
Over the past years I have studied the evolution of vision in several vertebrate lineages, but mostly focusing on reptiles. Under my European Union Marie Skłodowska-Curie Global Fellowship I integrate genomic, physiological and anatomical data to understand the genomic underpinning of phenotypic variation in the vertebrate visual system, the relative roles of adaptation and constraints in the origin of novel visual phenotypes, and to understand whether complex visual systems can be re-elaborated following evolutionary degeneration.
Date Position Institution name 2020 - ongoing Lecturer in Animal Biology University of Plymouth 2017 - ongoing Adjunct Lecturer University of Adelaide, Adelaide 2016 - 2019 Marie Skłodowska-Curie Global Fellow University of Adelaide, Adelaide 2016 - 2019 Marie Skłodowska-Curie Global Fellow University of Bristol 2016 - 2016 Principal Molecular Biologist Applied Genomics, Ltd 2012 - 2015 Postdoctoral Researcher The Natural History Museum, London
Language Competency English Can read, write, speak, understand spoken and peer review French Can read and understand spoken Portuguese Can read, write, speak, understand spoken and peer review Spanish; Castilian Can read, write, speak, understand spoken and peer review
Date Institution name Country Title 2008 - 2012 National University of Ireland - University College Dublin Ireland PhD 2005 - 2007 University of Porto Portugal MSc, Biodiversity and Genetic Resources 2000 - 2004 University of the Azores Portugal Licentiate degree, Biology
Year Citation 2023 Rossetto, I. H., Sanders, K. L., Simões, B. F., Van Cao, N., & Ludington, A. J. (2023). Functional Duplication of the Short-Wavelength-Sensitive Opsin in Sea Snakes: Evidence for Reexpanded Color Sensitivity Following Ancestral Regression. Genome Biology and Evolution, 15(7), 1-5.
2021 Crowe-Riddell, J. M., Dix, S., Pieterman, L., Nankivell, J. H., Ford, M., Ludington, A. J., . . . Allen, L. (2021). From matte banded to glossy black: structures underlying colour change in the caudal lures of southern death adders (Acanthophis antarcticus, Reptilia: Elapidae). Biological Journal of the Linnean Society, 132(3), 666-675.
DOI Scopus5 WoS3
2021 Gower, D. J., Fleming, J. F., Pisani, D., Vonk, F. J., Kerkkamp, H. M. I., Peichl, L., . . . Simoes, B. F. (2021). Eye-transcriptome and genome-wide sequencing for Scolecophidia: implications for inferring the visual system of the ancestral snake. Genome Biology and Evolution, 13(12), evab253-1-evab253-12.
DOI Scopus5 WoS1 Europe PMC4
2020 Simoes, B. F., Gower, D. J., Rasmussen, A. R., Sarker, M. A. R., Fry, G. C., Casewell, N. R., . . . Sanders, K. L. (2020). Spectral diversification and trans-species allelic polymorphism during the land-to-sea transition in snakes. Current Biology, 30(13), 2608-2615.e4.
DOI Scopus12 WoS9 Europe PMC8
2019 Simões, B. F., Foley, N. M., Hughes, G. M., Zhao, H., Zhang, S., Rossiter, S. J., & Teeling, E. C. (2019). As Blind as a Bat? Opsin Phylogenetics Illuminates the Evolution of Color Vision in Bats. Molecular biology and evolution, 36(1), 54-68.
DOI Scopus18 WoS17 Europe PMC8
2019 Crowe-Riddell, J. M., Simões, B. F., Partridge, J. C., Hunt, D. M., Delean, S., Schwerdt, J. G., . . . Sanders, K. L. (2019). Phototactic tails: evolution and molecular basis of a novel sensory trait in sea snakes. Molecular Ecology, 28(8), 1-16.
DOI Scopus12 WoS9 Europe PMC6
2019 Travouillon, K. J., Simões, B. F., Miguez, R. P., Brace, S., Brewer, P., Stemmer, D., . . . Louys, J. (2019). Hidden in plain sight: reassessment of the pig-footed bandicoot, Chaeropus ecaudatus (Peramelemorphia, Chaeropodidae), with a description of a new species from central Australia, and use of the fossil record to trace its past distribution. Zootaxa, 4566(1), 1-69.
DOI Scopus17 WoS18 Europe PMC1
2019 Gower, D. J., Sampaio, F. L., Peichl, L., Wagner, H. J., Loew, E. R., McLamb, W., . . . Simões, B. F. (2019). Evolution of the eyes of vipers with and without infrared-sensing pit organs. Biological Journal of the Linnean Society, 126(4), 796-823.
DOI Scopus18 WoS15
2017 Simoes, B. F., & Gower, D. J. (2017). Visual Pigment Evolution in Reptiles. eLS, 1-9.
2016 Simões, B., Sampaio, F., Loew, E., Sanders, K., Fisher, R., Hart, N., . . . Gower, D. (2016). Multiple rod-cone and cone-rod photoreceptor transmutations in snakes: evidence from visual opsin gene expression. Proceedings. Biological sciences, 283(1823), 8 pages.
DOI Scopus29 WoS30 Europe PMC13
2016 Simões, B. F., Sampaio, F. L., Douglas, R. H., Kodandaramaiah, U., Casewell, N. R., Harrison, R. A., . . . Gower, D. J. (2016). Visual Pigments, Ocular Filters and the Evolution of Snake Vision. Molecular Biology and Evolution, 33(10), 2483-2495.
DOI Scopus54 WoS54 Europe PMC23
2015 Simões, B. F., Sampaio, F. L., Jared, C., Antoniazzi, M. M., Loew, E. R., Bowmaker, J. K., . . . Gower, D. J. (2015). Visual system evolution and the nature of the ancestral snake. Journal of Evolutionary Biology, 28(7), 1309-1320.
DOI Scopus58 WoS56 Europe PMC34
2007 Simões, B. F., Rebelo, H., Lopes, R. J., Alves, P. C., & Harris, D. J. (2007). Patterns of genetic diversity within and between Myotis d. daubentonii and M. d. nathalinae derived from cytochrome b mtDNA sequence data. Acta Chiropterologica, 9(2), 379-389.
DOI Scopus4 WoS3
Year Citation 2020 Crowe-Riddell, J. M., Pieterman, L., Simoes, B. F., Nankivell, J. H., Ford, M., Ludington, A., . . . Sanders, K. L. (2020). Ontogenetic change in hue and structure of caudal lure reflects dietary shift in Australian death adders (Elapidae). In INTEGRATIVE AND COMPARATIVE BIOLOGY Vol. 60 (pp. E304). Austin, TX: OXFORD UNIV PRESS INC.
Year Citation - Crowe-Riddell, J., Simoes, B., Schwerdt, J., Ludington, A., Breen, J., & Sanders, K. (n.d.). Phototactic tails manuscript ESM-Files.
Australian Research Council – Discovery Project: Evolutionary dynamics of reptile vision: How are complex traits lost and re-innovated during ecological transitions? DP180101688 (Co-Lead with Kate Sanders; other PI/CIs: James Green, David Hunt, Mark Hutchinson, Belinda Chang, Emma Teeling)
European Union – H2020, Marie Skłodowska-Curie Global Fellowship: Elaboration and degeneration of complex traits: The visual systems of lizards and snakes (Evol-Eyes) — Applicant
Environment Institute – University of Adelaide, Small Research Grants Scheme: Molecular evolution of vision in sea snakes — Co-Applicant with Dr. Kate Sanders
Portuguese Foundation for Science and Technology (FCT), International Doctoral Fellowship: Molecular Mechanisms and Evolution of Mammalian Sensory Perception: Visual Pathways in Bats (SFRH/BD/36369/2007) — Applicant
Affiliate Lecturer – School of Biological Sciences, University of Adelaide
Guest lecturers in
- Foundations in Marine Biology III
- Research Methods in Evolutionary Biology
Current Higher Degree by Research Supervision (University of Adelaide)
Date Role Research Topic Program Degree Type Student Load Student Name 2020 Co-Supervisor Evolution of Sea Snakes. Doctor of Philosophy Doctorate Full Time Mr Isaac Henry Rossetto
Past Higher Degree by Research Supervision (University of Adelaide)
Date Role Research Topic Program Degree Type Student Load Student Name 2018 - 2022 Co-Supervisor Visual Evolution of Scincoidea Doctor of Philosophy Doctorate Full Time Mr Matthew John Robert Ford
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