Dr Simon Tuke
Senior Lecturer
School of Computer and Mathematical Sciences
Faculty of Sciences, Engineering and Technology
Eligible to supervise Masters and PhD - email supervisor to discuss availability.
Applied statistician with expertise in biostatistics, bioinformatics, and network analysis.
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Appointments
Date Position Institution name 2007 - ongoing Lecturer University of Adelaide -
Education
Date Institution name Country Title 2005 - 2013 University of Adelaide Australia PhD 2001 - 2004 University of Adelaide Australia BSc (Maths & Comp Sci) 1987 - 1992 Edinburgh University Scotland BVM&S -
Research Interests
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Journals
Year Citation 2025 Wang, K., Tobias, B., Pany-Kucera, D., Berner, M., Eggers, S., Gnecchi-Ruscone, G. A., . . . Hofmanová, Z. (2025). Ancient DNA reveals reproductive barrier despite shared Avar-period culture.. Nature, 638(8052), 1007-1014.
2025 Rohrlach, A. B., Tuke, J., Popli, D. R., & Haak, W. (2025). BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data. Journal of Open Source Software, 10(108), 7916.
2024 du Preez, M., Taggart, R., Nakahara, N., Tuke, J., & Siow, J. W. (2024). Evaluation of measurements for tracheal hypoplasia in French bulldogs. Veterinary Radiology and Ultrasound, 65(6), 865-874.
2024 Goncalves Costa, A., Nielsen, T., Christley, R., Tuke, J., & Hazel, S. J. (2024). Investigating Factors Associated With Stress in Guardians of Dogs Under 12 Months of Age. ANTHROZOOS, 37(6), 1195-1215.
2024 Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2024). Revealing patient-reported experiences in healthcare from social media using the design-acquire-process-model-analyse-visualise framework (vol 10, 10.1177/20552076241251715, 2024). DIGITAL HEALTH, 10, 1 page.
2024 Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2024). Probabilistic emotion and sentiment modelling of patient-reported experiences.. CoRR, abs/2401.04367. 2024 Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2024). Revealing patient-reported experiences in healthcare from social media using thedesign-acquire-process-model-analyse-visualise framework. Digit Health, 10, 1-20.
2024 Rivollat, M., Rohrlach, A. B., Ringbauer, H., Childebayeva, A., Mendisco, F., Barquera, R., . . . Haak, W. (2024). Inferences on regional networks from local genetic trees, the example of the Neolithic site of Gurgy 'les Noisats'. Bulletins et Memoires de la Societe d'Anthropologie de Paris, 36. 2023 Ryan, M., Tuke, J., Hutchinson, M. R., & Spencer, S. J. (2023). Gender-specific effects of COVID-19 lockdowns on scientific publishing productivity: Impact and resilience. Social Science and Medicine, 320, 115761-1-115761-9.
Scopus6 WoS2 Europe PMC32023 Zoanetti, J., Nielsen, T. D., Tuke, S., Young, J., & Hazel, S. (2023). Australian veterans' experience of pet ownership: Benefits, costs, and moderating factors. Human-Animal Interactions, 11, 1-1-1-8.
Scopus12023 Rohrlach, A., Tuke, J., Popli, D., & Haak, W. (2023). BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data.
Europe PMC22023 Korver, S. K., Bowen, J. M., Gibson, R. J., Ball, I. A., Secombe, K. R., Wain, T. J., . . . Coller, J. K. (2023). Advanced statistics identifcation of participant and treatment predictors associated with severe adverse efects induced by fuoropyrimidine‑based chemotherapy. Cancer Chemother Pharmacol, 91(6), 507-521.
Scopus2 Europe PMC12023 Hyndman, T. H., Fretwell, S., Bowden, R. S., Coaicetto, F., Irons, P. C., Aleri, J. W., . . . Metcalfe, S. S. (2023). The effect of doxapram on survival and APGAR score in newborn puppies delivered by elective caesarean: A randomized controlled trial. Journal of Veterinary Pharmacology and Therapeutics, 46(6), 353-364.
Scopus4 Europe PMC32023 Ankeny, R. A., Whittaker, A. L., Ryan, M., Boer, J., Plebanski, M., Tuke, J., & Spencer, S. J. (2023). The power of effective study design in animal Experimentation: Exploring the statistical and ethical implications of asking multiple questions of a data set. Brain, Behavior, and Immunity, 112, 163-172.
Scopus2 Europe PMC22023 Ryan, M., Glonek, G., Tuke, J., & Humphries, M. (2023). Capturing functional connectomics using Riemannian partial least squares. Scientific Reports, 13(1), 15 pages.
2023 Rivollat, M., Rohrlach, A. B., Ringbauer, H., Childebayeva, A., Mendisco, F., Barquera, R., . . . Haak, W. (2023). Extensive pedigrees reveal the social organization of a Neolithic community.. Nature, 620(7974), 600-606.
Scopus36 WoS6 Europe PMC262022 Lountain, O., Tuke, J., Brown, H., Redman, K., Wilczek, S., & Humphries, M. A. (2022). A multivariate extension to the standard 4σ criterion for comparison of forensic glass evidence.. Forensic Sci Int, 338, 1-7.
Scopus2 Europe PMC12022 Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2022). Revealing Patient-Reported Experiences in Healthcare from Social Media using the DAPMAV Framework.. CoRR, abs/2210.04232. 2022 Nasim, M., Weber, D., South, T., Tuke, J., Bean, N. G., Falzon, L., & Mitchell, L. (2022). Are we always in strife? A longitudinal study of the echo chamber effect in the Australian Twittersphere.. CoRR, abs/2201.09161. 2022 Sui, Y., Wollan, D., McRae, J., Muhlack, R., Tuke, J., & Wilkinson, K. (2022). Impact of commercial scale ultrafiltration on the composition of white and rosé wine. Separation and Purification Technology, 284, 8 pages.
Scopus10 WoS22022 Nasim, M., Weber, D., South, T., Tuke, J., Bean, N., Falzon, L., & Mitchell, L. (2022). Are we always in strife? A longitudinal study of the echo chamber effect
in the Australian Twittersphere.2022 Ryan, M., Glonek, G., Humphries, M., & Tuke, J. (2022). Multivariate distance matrix regression for a manifold-valued response
variable.2022 Brereton, J. E., Tuke, J., & Fernandez, E. J. (2022). A simulated comparison of behavioural observation sampling methods.. Scientific reports, 12(1), 10 pages.
Scopus19 WoS10 Europe PMC122022 Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2022). Revealing Patient-Reported Experiences in Healthcare from Social Media
using the DAPMAV Framework.2022 Souilmi, Y., Tobler, R., Johar, A., Williams, M., Grey, S. T., Schmidt, J., . . . Huber, C. D. (2022). Admixture has obscured signals of historical hard sweeps in humans. Nature Ecology & Evolution, 6(12), 2003-2015.
Scopus14 WoS3 Europe PMC202021 Coller, J. K., Tuke, J., Wain, T. J., Quinn, E., Steele, L., Abreu, M., . . . Sullivan, K. (2021). Associations of immune genetic variability with gulf war illness in 1990–1991 gulf war veterans from the gulf war illness consortium (Gwic) multisite case-control study. Brain Sciences, 11(11), 1410-1-1410-7.
Scopus4 WoS2 Europe PMC32021 Moloney, G. K., Tuke, J., Dal Grande, E., Nielsen, T., & Chaber, A. -L. (2021). Is YouTube promoting the exotic pet trade? Analysis of the global public perception of popular YouTube videos featuring threatened exotic animals.. PloS one, 16(4), e0235451.
Scopus19 WoS9 Europe PMC32021 Sallustio, B. C., Noll, B. D., Hu, R., Barratt, D. T., Tuke, S. J., Coller, J. K., . . . Somogyi, A. A. (2021). Tacrolimus dose, blood concentrations and acute nephrotoxicity, but not CYP3A5/ABCB1 genetics, are associated with allograft tacrolimus concentrations in renal transplant recipients. British Journal of Clinical Pharmacology, 87(10), 3901-3909.
Scopus20 WoS12 Europe PMC122021 Aguiar Macedo Teixeira, J. C., Jacobs, G. S., Stringer, C., Tuke, S., Hudjashov, G., Purnomo, G. A., . . . Helgen, K. M. (2021). Widespread Denisovan ancestry in Island Southeast Asia but no evidence of substantial super-archaic hominin admixture. Nature Ecology & Evolution, 5(5), 616-624.
Scopus30 WoS18 Europe PMC142020 He, B., Ng, Z. Q., Mou, L., Delriviere, L., Jaques, B., Tuke, S. J., . . . Lim, W. (2020). Long Term Outcome of Kidney Transplant by Using Restored Kidney Grafts after Tumour ex vivo Excision - A prospective study. Transplant international : official journal of the European Society for Organ Transplantation, 33(10), 1253-1261.
Scopus4 WoS1 Europe PMC42020 Teixeira, J., Jacobs, G., Stringer, C., Tuke, J., Hudjashov, G., Purnomo, G., . . . Helgen, K. (2020). Introgression, hominin dispersal and megafaunal survival in Late Pleistocene Island Southeast Asia.
2020 Souilmi, Y., Tobler, R., Johar, A., Williams, M., Grey, S., Schmidt, J., . . . Cooper, A. (2020). Ancient human genomes reveal a hidden history of strong selection in Eurasia.
2020 Hunter, T., van Rooy, D., McArthur, M., Bennett, S., Tuke, J., & Hazel, S. (2020). Mental Health Disease or Preventable Problem? Australian Dog Trainers' Opinions about Canine Separation Anxiety Differ with Training Style.. Animals (Basel), 10(8), 15 pages.
Scopus22020 Szeto, C., Ristic, R., Capone, D., Puglisi, C., Pagay, V., Culbert, J., . . . Wilkinson, K. (2020). Uptake and glycosylation of smoke-derived volatile phenols by Cabernet Sauvignon grapes and their subsequent fate during winemaking. Molecules, 25(16), 1-17.
Scopus40 WoS29 Europe PMC232020 Tuke, J., Nguyen, A., Nasim, M., Mellor, D., Wickramasinghe, A., Bean, N. G., & Mitchell, L. (2020). Pachinko Prediction: A Bayesian method for event prediction from social media data.. Inf. Process. Manag., 57, 102147. 2020 Tuke, J., Nguyen, A., Nasim, M., Mellor, D., Wickramasinghe, A., Bean, N. G., & Mitchell, L. (2020). Pachinko Prediction: A Bayesian method for event prediction from social media data. Information Processing and Management, 57(2), 102147-1-102147-13.
Scopus21 WoS102020 Crotty, S. M., Minh, B. Q., Bean, N. G., Holland, B. R., Tuke, J., Jermiin, L. S., & von Haeseler, A. (2020). GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments.. Systematic biology, 69(2), 249-264.
Scopus122 WoS75 Europe PMC882020 Goncalves Costa, A., Nielsen, T., Dal Grande, E., Tuke, J., & Hazel, S. (2020). Regulatory Compliance in Online Dog Advertisements in Australia.. Animals : an open access journal from MDPI, 10(3), 20 pages.
Scopus3 WoS3 Europe PMC32020 Breed, W. G., Ding, X., Tuke, J., & Leigh, C. M. (2020). Morphological diversity of the spermatozoon and male reproductive tract in Australian Hopping mice, genus Notomys – is it determined by sexual selection?. Journal of Zoology, 311(3), 194-203.
Scopus2 WoS22020 Fitzgerald, S. P., Bean, N. G., Falhammar, H., & Tuke, S. J. (2020). CLINICAL PARAMETERS ARE MORE LIKELY TO BE ASSOCIATED WITH THYROID HORMONE LEVELS THAN WITH TSH LEVELS: A SYSTEMATIC REVIEW AND META-ANALYSIS.. Thyroid, 30(12), 1695-1709.
Scopus74 WoS52 Europe PMC472020 Pham, D., Ristic, R., Stockdale, V. J., Jeffery, D. W., Tuke, S., & Wilkinson, K. (2020). Influence of partial dealcoholization on the composition and sensory properties of Cabernet Sauvignon wines. Food Chemistry, 325, 126869-1-126869-8.
Scopus28 WoS11 Europe PMC72019 Pham, D. -T., Stockdale, V. J., Jeffery, D. W., Tuke, J., & Wilkinson, K. L. (2019). Investigating alcohol sweetspot phenomena in reduced alcohol red wines. Foods (Basel, Switzerland), 8(10), 1-12.
Scopus7 WoS1 Europe PMC12019 Glonek, M., Tuke, J., Mitchell, L., & Bean, N. G. (2019). Semi-supervised graph labelling reveals increasing partisanship in the United States Congress.. CoRR, abs/1904.01153. 2019 Coller, J. K., Ramachandran, J., John, L., Tuke, J., Wigg, A., & Doogue, M. (2019). The impact of liver transplant recipient and donor genetic variability on tacrolimus exposure and transplant outcome. British Journal of Clinical Pharmacology, 85(9), 2170-2175.
Scopus13 WoS11 Europe PMC102019 Sallustio, B. C., Noll, B. D., Coller, J. K., Tuke, J., Russ, G., & Somogyi, A. A. (2019). Relationship between allograft cyclosporin concentrations and P-glycoprotein expression in the 1st month following renal transplantation. British Journal of Clinical Pharmacology, 85(5), 1015-1020.
Scopus4 WoS3 Europe PMC22019 Glonek, M., Tuke, J., Mitchell, L., & Bean, N. (2019). Semi-supervised graph labelling reveals increasing partisanship in the United States Congress. Applied Network Science, 4(1), 62-1-62-18.
Scopus1 WoS12018 Hazel, S., Jenvey, C., & Tuke, J. (2018). Online relinquishments of dogs and cats in Australia. Animals, 8(2), 19 pages.
Scopus11 WoS10 Europe PMC72018 Peirce, E., McLennan, H., Tuke, J., Leigh, C., & Breed, W. (2018). Evolution of the testis and spermatozoon in mice and rats (Subfamily Murinae) in the absence of sperm competition. Journal of Zoology, 306(1), 58-68.
Scopus5 WoS52018 Price, D. J., Bean, N. G., Ross, J. V., & Tuke, J. (2018). Designing group dose-response studies in the presence of transmission. Mathematical Biosciences, 304, 62-78.
Scopus3 WoS3 Europe PMC42018 Md Dom, Z., Coller, J., Carroll, R., Tuke, J., McWhinney, B., Somogyi, A., & Sallustio, B. (2018). Mycophenolic acid concentrations in peripheral blood mononuclear cells are associated with the incidence of rejection in renal transplant recipients. British Journal of Clinical Pharmacology, 84(10), 2433-2442.
Scopus18 WoS12 Europe PMC122018 Price, D., Bean, N., Ross, J., & Tuke, J. (2018). An induced natural selection heuristic for finding optimal Bayesian experimental designs. Computational Statistics and Data Analysis, 126(C), 112-124.
Scopus10 WoS92018 Edwards, M., Mitchell, L., Tuke, J., & Roughan, M. (2018). The one comparing narrative social network extraction techniques.. CoRR, abs/1811.01467. 2017 Lehmann, H., Musk, G., Laurence, M., Bech-Gleerup, K., Collins, T., Hyndman, T., . . . Johnson, C. (2017). Lidocaine or meloxicam analgesia decrease nociception as indicated by cardiovascular responses of halothane-anaesthetized Bos indicus bull calves during surgical castration. Veterinary Anaesthesia and Analgesia, 44(1), 195.e7.
2017 Marum, J., Yeung, D., Purins, L., Reynolds, J., Parker, W., Stangl, D., . . . Branford, S. (2017). ASXL1 and BIM germ line variants predict response and identify CML patients with the greatest risk of imatinib failure. Blood Advances, 1(18), 1369-1381.
Scopus18 WoS11 Europe PMC142017 Musk, G., Jacobsen, S., Hyndman, T., Lehmann, H., Tuke, S., Collins, T., . . . Laurence, M. (2017). Objective measures for the assessment of post-operative pain in bos indicus bull calves following castration. Animals, 7(10), 76-1-76-15.
Scopus13 WoS7 Europe PMC112017 Chen, K., Glonek, G., Hansen, A., Williams, S., Tuke, J., Salter, A., & Bi, P. (2017). Reply to 'Comments on the effects of air pollution on asthma hospital admissions in Adelaide, South Australia, 2003-2013: time series and case-crossover analyses'.. Clin Exp Allergy, 47(1), 141.
2017 Weaver, T., Valcanis, M., Mercoulia, K., Sait, M., Tuke, J., Kiermeier, A., . . . Billman-Jacobe, H. (2017). Longitudinal study of Salmonella 1,4,[5],12:i:- shedding in five Australian pig herds. Preventive Veterinary Medicine, 136, 19-28.
Scopus17 WoS17 Europe PMC152017 Tan, T., Tuke, J., & Musk, G. (2017). Nasopharyngeal temperature measurement in sheep during general anesthesia. Canadian Journal of Veterinary Research, 81(1), 64-68.
Scopus2 WoS12017 Tobler, R., Rohrlach, A., Soubrier, J., Bover Arbos, P., Llamas, B., Tuke, J., . . . Cooper, A. (2017). Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia. Nature, 544(7649), 180-184.
Scopus160 WoS121 Europe PMC602017 Lehmann, H., Musk, G., Laurence, M., Hyndman, T., Tuke, J., Collins, T., . . . Johnson, C. (2017). Mitigation of electroencephalographic and cardiovascular responses to castration in Bos indicus bulls following the administration of either lidocaine or meloxicam. Veterinary Anaesthesia and Analgesia, 44(6), 1341-1352.
Scopus14 WoS7 Europe PMC82017 Crotty, S., Minh, B. Q., Bean, N., Holland, B., Tuke, J., Jermiin, L., & Haeseler, A. V. (2017). GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments. Biorxiv.
2017 Musk, G., Laurence, M., Collins, T., Tuke, J., & Hyndman, T. (2017). Mechanical nociceptive threshold testing in Bos indicus bull calves. Animal Production Science, 57(3), 576-582.
Scopus8 WoS62016 Delacroix, S., Chokka, R., Nelson, A., Sidharta, S., Teo, K., Tuke, J., . . . Worthley, S. (2016). SAFETY AND EFFICACY OF PRO ANP 31-67 IN CARDIORENAL SYNDROME: A FIRST-IN-HUMAN TRIAL. JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY, 67(13), 1351.
WoS22016 Chen, K., Glonek, G., Hansen, A., Williams, S., Tuke, J., Salter, A., & Bi, P. (2016). The effects of air pollution on asthma hospital admissions in Adelaide, South Australia, 2003–2013: time-series and case–crossover analyses. Clinical and Experimental Allergy, 46(11), 1416-1430.
Scopus77 WoS66 Europe PMC362016 Price, D. J., Bean, N. G., Ross, J. V., & Tuke, J. (2016). On the efficient determination of optimal Bayesian experimental designs using ABC: a case study in optimal observation of epidemics. Journal of Statistical Planning and Inference, 172, 1-15.
Scopus10 WoS92016 Musk, G., Costa, R., & Tuke, J. (2016). Body temperature measurements in pigs during general anaesthesia. Laboratory Animals, 50(2), 119-124.
Scopus11 WoS9 Europe PMC82016 McLennan, H., Tuke, J., & Breed, W. (2016). The Gerbil Spermatozoon - interspecific variation in morphology does not invariably follow murine rodent evolutionary trends in response to predicted intermale sperm competition. Acta Zoologica, 97(3), 361-369.
Scopus1 WoS12016 Rasi Ghaemi, S., Delalat, B., Cetó, X., Harding, F., Tuke, J., & Voelcker, N. (2016). Synergistic influence of collagen I and BMP 2 drives osteogenic differentiation of mesenchymal stem cells: a cell microarray analysis. Acta Biomaterialia, 34, 41-52.
Scopus45 WoS36 Europe PMC222016 Erbas, B., Shrestha, S. K., Dharmage, S. C., Katelaris, C., Davies, J., & Abramson, M. J. (2016). The effects of Air Pollution on asthma Hospital admissions in Adelaide, South Australia, 2003-2013: time series and case-crossover analysis. CLINICAL AND EXPERIMENTAL ALLERGY, 46(12), 1623-1624.
WoS4 Europe PMC22015 Johnson, J. L., Kwok, Y. H., Sumracki, N. M., Swift, J. E., Hutchinson, M. R., Johnson, K., . . . Rolan, P. E. (2015). Glial attenuation with ibudilast in the treatment of medication overuse headache: a double-blind, randomized, placebo-controlled pilot trial of efficacy and safety. Headache, 55(9), 1192-1208.
Scopus18 WoS13 Europe PMC132015 Tuke, J., & Roughan, M. (2015). All networks look the same to me: Testing for homogeneity in networks.. CoRR, abs/1512.00877. 2015 Coller, J., White, I., Logan, R., Tuke, J., Richards, A., Mead, K., . . . Bowen, J. (2015). Predictive model for risk of severe gastrointestinal toxicity following chemotherapy using patient immune genetics and type of cancer: a pilot study. Supportive Care in Cancer, 23(5), 1233-1236.
Scopus19 WoS16 Europe PMC102015 Corrigan, F., Wu, Y., Tuke, J., Coller, J., Rice, K., Diener, K., . . . Hutchinson, M. (2015). Alcohol-induced sedation and synergistic interactions between alcohol and morphine: a key mechanistic role for Toll-like receptors and MyD88-dependent signaling. Brain, Behavior, and Immunity, 45, 245-252.
Scopus22 WoS17 Europe PMC202015 Roughan, M., & Tuke, S. (2015). Unravelling Graph-Exchange File Formats.. CoRR, abs/1503.02781. 2014 Johnson, J., Rolan, P., Johnson, M., Bobrovskaya, L., Williams, D., Johnson, K., . . . Hutchinson, M. (2014). Codeine-induced hyperalgesia and allodynia: investigating the role of glial activation. Translational Psychiatry, 4(11), e482-1-e482-9.
Scopus32 WoS28 Europe PMC282014 Barratt, D., Bandak, B., Klepstad, P., Dale, O., Kaasa, S., Christrup, L., . . . Somogyi, A. (2014). Genetic, pathological and physiological determinants of transdermal fentanyl pharmacokinetics in 620 cancer patients of the EPOS study. Pharmacogenetics and Genomics, 24(4), 185-194.
Scopus52 WoS35 Europe PMC332014 Musk, G., Costa, R., & Tuke, J. (2014). Doppler blood pressure measurement in pigs during anaesthesia. Research in Veterinary Science, 97(1), 129-131.
Scopus9 WoS4 Europe PMC12014 Sheng, G., Soubrier, J., Liu, J., Werdelin, L., Llamas, B., Thomson, V., . . . Cooper, A. (2014). Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta. Molecular Ecology, 23(3), 522-533.
Scopus34 WoS26 Europe PMC112014 Musk, G., Murdoch, F., Tuke, J., Kemp, M., Dixon, M., & Taylor, P. (2014). Thermal and mechanical nociceptive threshold testing in pregnant sheep. Veterinary Anaesthesia and Analgesia, 41(3), 305-311.
Scopus24 WoS21 Europe PMC132014 Nicotra, L., Tuke, S., Grace, P., Rolan, P., & Hutchinson, M. (2014). Sex differences in mechanical allodynia: how can it be preclinically quantified and analyzed?. Frontiers in Behavioral Neuroscience, 8(February), 1-16.
Scopus43 WoS33 Europe PMC322013 Kwok, Y., Tuke, S., Nicotra, L., Grace, P., Rolan, P., & Hutchinson, M. (2013). TLR 2 and 4 responsiveness from isolated peripheral blood mononuclear cells from rats and humans as potential chronic pain biomarkers. PLoS One, 8(10), 1-16.
Scopus20 WoS16 Europe PMC182013 Kutyla, M., Boehm, M., Stokes, J., Shaw, P., Davies, N., McGeary, R., . . . Ross, B. (2013). Cyclodextrin-crosslinked poly(acrylic acid): Adhesion and controlled release of diflunisal and fluconazole from solid dosage forms. AAPS PharmSciTech, 14(1), 301-311.
Scopus15 WoS13 Europe PMC52013 Hutchinson, M., Bujis, M., Tuke, S., Kwok, Y., Gentgall, M., Williams, D., & Rolan, P. (2013). Low-dose endotoxin potentiates capsaicin-induced pain in man: evidence for a pain neuroimmune connection. Brain Behavior and Immunity, 30, 3-11.
Scopus58 WoS47 Europe PMC422012 Binder, B., HackettJones, E., Tuke, S., & Landman, K. (2012). A modified Pólya urn process and an index for spatial distributions with volume exclusion. The ANZIAM Journal, 53(2), 122-133.
Scopus3 WoS32012 Tuke, J., Glonek, G. F. V., & Solomon, P. J. (2012). P-values, q-values and posterior probabilities for equivalence in
genomics studies.2009 Tuke, S., Glonek, G., & Solomon, P. (2009). Gene profiling for determining pluripotent genes in a time course microarray experiment. Biostatistics, 10(1), 80-93.
Scopus10 WoS10 Europe PMC62007 Bruce, W., Rose, A., Tuke, S., & Robins, G. (2007). Evaluation of the triple tibial osteotomy. A new technique for the management of the canine cruciate-deficient stifle. Veterinary and Comparative Orthopaedics and Traumatology, 20(3), 159-168.
Scopus58 WoS46 Europe PMC25 -
Books
Year Citation 2019 Metcalfe, A., Green, D., Greenfield, T., Mansor, M., Smith, A., & Tuke, J. (2019). Statistics in Engineering: With Examples in MATLAB® and R, Second Edition. Chapman and Hall/CRC.
DOI Scopus11 -
Conference Papers
Year Citation 2024 Murray, C., Mitchell, L., Tuke, J., & Mackay, M. (2024). Probabilistic emotion and sentiment modelling of patient-reported
experiences.2024 Watt, J., Mitchell, L., & Tuke, J. (2024). Personality Profiling: How informative are social media profiles in predicting personal information?. In ALTA 2024 - Proceedings of the 22nd Annual Workshop of the Australasian Language Technology Association (pp. 153-163). Canberra, Australia: Association for Computational Linguistics (ACL). 2024 Watt, J., Mitchell, L., & Tuke, J. (2024). Personality Profiling: How informative are social media profiles in predicting personal information?. In Proceedings of the Australasian Language Technology Workshop Vol. 22 (pp. 153-163). Canberra, Australia: Australasian Language Technology Association. 2023 Watt, J., Tuke, J., & Mitchell, L. (2023). Personality Profiling: How informative are social media profiles in predicting personal information?. In CoRR Vol. abs/2309.13065. 2021 Murray, C., Mitchell, L., Tuke, S. J., & Mackay, M. (2021). Symptom Extraction from the Narratives of Personal Experiences with COVID-19 on Reddit.. In O. Balalau, K. Ognyanova, & D. M. Romero (Eds.), ICWSM Workshops. 2021 Murray, C., Mitchell, L., Tuke, S. J., & Mackay, M. (2021). Symptom extraction from the narratives of personal experiences with COVID-19 on Reddit. In Workshop Proceedings of the 15th International AAAI Conference on Web and Social Media (ICWSM 2021) Vol. abs/2005.10454 (pp. 1-10). California, USA: Association for the Advancement of Artificial Intelligence Press.
DOI2020 Edwards, M., Tuke, S., Roughan, M., & Mitchell, L. (2020). The one comparing narrative social network extraction techniques. In M. Atzmüller, M. Coscia, & R. Missaoui (Eds.), Proceedings of the IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM2020) (pp. 905-913). online: IEEE.
DOI Scopus5 WoS12019 Roughan, M., Tuke, J., & Parsonage, E. (2019). Estimating the parameters of the Waxman random graph. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 11631 LNCS (pp. 71-86). Switzerland: Springer.
DOI Scopus12019 Nguyen, A., South, T., Bean, N., Tuke, S. J., & Mitchell, L. (2019). Podlab at SemEval-2019 Task 3: The Importance of Being Shallow. In Proceedings of the 13th International Workshop on Semantic Evaluation (pp. 292-296). online: The Association for Computational Linguistics. 2019 Glonek, M., Tuke, S., Mitchell, L., & Bean, N. (2019). GLaSS: Semi-supervised graph labelling with Markov random walks to absorption. In Proceedings of the 7th International Conference on Complex Networks and Their Applications (COMPLEX NETWORKS 2018), as published in Complex Networks and Their Applications VII: Volume 1 Vol. 812 (pp. 304-315). Cham, Switzerland: Springer.
DOI Scopus12019 Glenny, V., Tuke, J., Bean, N., & Mitchell, L. (2019). A framework for streamlined statistical prediction using topic models. In Proceedings of the 3rd Joint SIGHUM Workshop on Computational Linguistics for Cultural Heritage, Social Sciences, Humanities and Literature Vol. abs/1904.06941 (pp. 61-70). Minneapolis, MN: Association for Computational Linguistics.
DOI Scopus12019 Michaelson, G., Roughan, M., Tuke, J., Wand, M. P., & Bush, R. (2019). Rasch analysis of HTTPS reachability. In Proceedings of the IFIP Networking Conference 2018 (pp. 1-9). New York: IEEE.
DOI2018 Korver, S. K., Bowen, J. M., Ball, I. A., Gibson, R. J., Tuke, J., Logan, R., . . . Coller, J. K. (2018). Personalised supportive care for patients receiving 5-fluorouracil (5-FU): analysis of multivariate SNP risk prediction for GI toxicity. In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY Vol. 14 (pp. 58-59). WILEY. 2018 Michaelson, G., Roughan, M., Tuke, J., Wand, M. P., & Bush, R. (2018). Rasch analysis of HTTPS reachability. In C. Casetti, F. Kuipers, J. P. G. Sterbenz, & B. Stiller (Eds.), 17th International IFIP TC6 Networking Conference, Networking 2018 (pp. 1-9). Switzerland: IFIP Open Digital Library. 2015 Roughan, M., & Tuke, J. (2015). The hitchhikers guide to sharing graph data. In Proceedings of the 3rd International Conference on Future Internet of Things and Cloud, FiCloud and 2015 International Conference on Open and Big Data, OBD 2015 (pp. 435-442). Rome, italy: IEEE.
DOI Scopus22015 Marum, J. E., Purins, L., Yeung, D. T., Parker, W. T., Price, D. J., Wang, P. P. S., . . . Branford, S. (2015). Germline Genetic Variation of ASXL1 and BIM Predicts Response to Imatinib and Identifies a Subset of High Sokal Risk Patients with the Greatest Risk of Treatment Failure and Disease Progression. In BLOOD Vol. 126 (pp. 4 pages). Orlando, FL: AMER SOC HEMATOLOGY.
DOI2013 Marshall, V., Ostendorf, B., Reynolds, T., Michaela, H., Tuke, J., & Lewis, M. (2013). Habitat suitability and susceptibility modeling for strategic control of invasive Buffel grass, South Australia. In Proceedings of the 20th International Congress on Modelling and Simulation, MODSIM 2013 (pp. 1917-1923). Australia: The Modelling and Simulation Society of Aust & NZ.
Scopus1 WoS12010 Pearce, C., Cohen, S., & Tuke, S. (2010). New Zealand palaeodemography: pitfalls & possibilities. In BIOMAT 2009 (pp. 194-212). PO Box 128 Farrer Rd, Singapore 9128: World Scientific Publ Co Pte Ltd.
DOI2008 Roughan, M., Tuke, S., & Maennel, O. (2008). Bigfoot, Sasquatch, the Yeti and other missing links: what we don't know about the AS graph. In Proceedings of the Internet Measurement Conference (pp. 1-8). USA: IEEE.
DOI Scopus40 WoS13 -
Conference Items
Year Citation 2019 Coller, J. K., Korver, S. K., Ball, I. A., Gibson, R. J., Tuke, J., Logan, R. M., . . . Bowen, J. M. (2019). Predictors of severe gastrointestinal toxicity risk in patients treated with 5-fluorouracil-based chemotherapy: A validation study. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY. 2019 Glenny, V. G., Tuke, J., Bean, N. G., & Mitchell, L. (2019). A framework for streamlined statistical prediction using topic models.. Poster session presented at the meeting of LaTeCH@NAACL-HLT. Association for Computational Linguistics. 2017 Bowen, J., Ball, I., Thompson, S., Irvine, T., Chiam, K., Hussey, D., . . . Keefe, D. (2017). Identification of Inflammatory Markers of Chemoradiotherapy-Induced Gastrointestinal Toxicity in Oesophageal Cancer. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY. 2017 Korver, S. K., Ball, I. A., Gibson, R. J., Tuke, J., Logan, R. M., Richards, A., . . . Coller, J. K. (2017). Interleukin-1 Beta (<i>IL1B</i>) Genetic Variability is Predictive of Chemotherapy-Induced Gastrointestinal Toxicity (CIGT) Risk in Patients Receiving 5-Fluorouracil. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY. 2013 Rolan, P. E., Hutchinson, M. R., Buijs, M., Tuke, J., Kwok, Y. H., Gentgall, M., . . . Nillsen, N. (2013). First demonstration of the neuroimmune link in humans using IV Endotoxin and Intradermal Capsaicin in the face and arm. Poster session presented at the meeting of JOURNAL OF HEADACHE AND PAIN. SPRINGER-VERLAG ITALIA SRL.
DOI2013 Bowen, J., White, I., Tuke, J., Logan, R., Richards, A., Mead, K., . . . Coller, J. (2013). IMMUNE GENETIC VARIABILITY IS ASSOCIATED WITH RISK OF SEVERE GASTROINTESTINAL TOXICITY IN PATIENTS TREATED WITH FLUOROURACIL. Poster session presented at the meeting of ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. WILEY-BLACKWELL. 2013 Coller, J., Tuke, J., Ramachandran, J., Wigg, A. J., & Doogue, M. (2013). Relationship between CYP3A5, ABCB1 and immune genetics and tacrolimus concentrations, and the occurrence of nephrotoxicity and rejection following liver transplantation. Poster session presented at the meeting of HEPATOLOGY. Washington, DC: WILEY-BLACKWELL. 2012 Coller, J., Hutchinson, M., Tuke, J., White, J., & Somogyi, A. (2012). 65. Association between immune genetic markers and opioid dependence. Poster session presented at the meeting of Brain, Behavior, and Immunity.
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Figures
Year Citation - Tuke, S. (n.d.). Classification of topic videos.
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Preprint
Year Citation 2024 Vozzo, R., Johnson, S., Tuke, J., & Evans, T. (2024). Active Learning at Scale: Investigating the Benefits of Peer Instruction
in Undergraduate Mathematics.2017 Michaelson, G., Roughan, M., Tuke, J., Wand, M. P., & Bush, R. (2017). Rigorous statistical analysis of HTTPS reachability..
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Current Higher Degree by Research Supervision (University of Adelaide)
Date Role Research Topic Program Degree Type Student Load Student Name 2024 Co-Supervisor Monitoring chronic pain using smart devices Master of Philosophy Master Full Time Miss Joan Shu Ting Lim 2024 Co-Supervisor Teaching old dogs new tricks to fight the signs of canine cognitive dysfunction Doctor of Philosophy Doctorate Full Time Ms Tracey Louise Taylor 2023 Principal Supervisor Using Twitter Posts to determine whether gender effects the sentiment of text. Master of Philosophy Master Full Time Mr Oska Tex Dubsky-Smith 2023 Principal Supervisor Using statistical natural language processing to analyse digitised historical sources Master of Philosophy Master Full Time Mr William Pincombe 2023 Principal Supervisor Predicting Clinical Need During Dispatch to Guide Ambulance Response Doctor of Philosophy Doctorate Part Time Mr Trevor Paul Matthews 2022 Co-Supervisor Large-scale social media sentiment analysis as a predictor of public behaviour in Australia. Doctor of Philosophy Doctorate Part Time Miss Saranzaya Magsarjav 2021 Co-Supervisor Analysis of Historical Texts using Natural Language Processing Doctor of Philosophy Doctorate Full Time Miss Ashley Grace Dennis-Henderson 2020 Co-Supervisor Understanding Patient Experiences in Healthcare through Natural Langauge Processing Doctor of Philosophy Doctorate Full Time Mr Curtis William Murray -
Past Higher Degree by Research Supervision (University of Adelaide)
Date Role Research Topic Program Degree Type Student Load Student Name 2021 - 2023 Co-Supervisor The Application of Social Media in Modern-Day Influence Campaigns: Personality Profiling and Information Warfare Master of Philosophy Master Full Time Mr Joshua Watt 2019 - 2021 Principal Supervisor A Machine Learning Approach for Detecting Selective Sweeps using Ancient DNA Master of Philosophy Master Full Time Mr Shing Yan Kwong 2019 - 2023 Co-Supervisor Riemannian statistical techniques with applications in fMRI Doctor of Philosophy Doctorate Full Time Mr Matthew James Ryan 2019 - 2021 Co-Supervisor Statistical Methods for Comparison of Forensic Glass Samples in Australia Master of Philosophy Master Full Time Mr Oliver James Lountain 2018 - 2022 Principal Supervisor Statistical modelling of queueing systems Doctor of Philosophy Doctorate Full Time Miss Sarah Ellen James 2018 - 2020 Co-Supervisor Analysis of World War One Diaries using Natural Language Processing Master of Philosophy Master Full Time Miss Ashley Grace Dennis-Henderson 2017 - 2019 Principal Supervisor Explanatory statistical modelling of influences of demographic experience on political identity Master of Philosophy Master Full Time Mr Lachlann Bradley McArthur 2017 - 2019 Principal Supervisor Longitudinal Data Analysis for Improving Patient Outcomes Following Hip Replacement Surgery Master of Philosophy Master Full Time Miss Bethany Pamela Phipps 2017 - 2019 Co-Supervisor The One with the Social Network Analysis: The Extraction, Analysis and Modelling of Temporal Social Networks from Narratives Master of Philosophy Master Full Time Miss Michelle Claire Edwards 2016 - 2018 Co-Supervisor A methodology for predictive topic modelling; or, any excuse to watch Love Actually Master of Philosophy Master Full Time Miss Vanessa Grace Glenny 2015 - 2017 Co-Supervisor Consensus Sequence Estimation Methods for DNA Sequence Data Sets Master of Philosophy Master Full Time Miss Sarah Ellen James 2014 - 2016 Principal Supervisor Inference for Epidemics on Networks Master of Philosophy Master Full Time Mr Brock Anthony Hermans 2014 - 2019 Co-Supervisor Statistical Methods for Identifying Demographic Structure in DNA Sequence Alignments Doctor of Philosophy Doctorate Part Time Dr Adam Rohrlach 2013 - 2015 Co-Supervisor On the Advancement of Optimal Experimental Design with Applications to Infectious Diseases Doctor of Philosophy Doctorate Full Time David James Price 2013 - 2016 Co-Supervisor A Simulation Study to Compare Gene Set Analysis Methods Master of Philosophy Master Full Time Mr Andrew James Pfeiffer 2012 - 2014 Co-Supervisor Data Driven Model Selection and Parameter Estimation Using Semi-Automatic Approximate Bayesian Computation to Reconstruct Population Dynamics from Ancient DNA Master of Philosophy Master Full Time Dr Adam Rohrlach 2012 - 2015 Co-Supervisor Using Aggregated Demographic Data to Inform Electoral Boundary Redistributions: 2010 South Australian Election Master of Philosophy Master Part Time Mr Casey Simon Briggs 2012 - 2017 Co-Supervisor GHOST: A Time-reversible Mixture Model for Recovering Phylogenetic Signal from Heterotachously-evolved Sequence Alignments Doctor of Philosophy Doctorate Full Time Mr Stephen Crotty 2011 - 2013 Co-Supervisor Mathematical Modelling and Statistical Analysis of School-Based Student Performance Data Master of Philosophy Master Full Time Mrs Jessica Jolley
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